Wall clock time and date at job start Mon Mar 30 2020 04:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47300 * 65.00013 * 4 3 2 6 6 C 1.42902 * 113.99996 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.46861 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00197 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99475 * 179.97438 * 7 6 5 10 10 C 1.47015 * 125.64986 * 359.69354 * 9 7 6 11 11 C 1.54337 * 107.26415 * 178.84802 * 10 9 7 12 12 C 1.55155 * 103.01932 * 338.13783 * 11 10 9 13 13 H 1.08995 * 111.00842 * 277.22934 * 12 11 10 14 14 C 1.50702 * 111.00074 * 153.38266 * 12 11 10 15 15 H 1.08000 * 120.00022 * 6.34754 * 14 12 11 16 16 C 1.37880 * 119.99952 * 186.35498 * 14 12 11 17 17 N 1.31514 * 119.99997 * 180.02562 * 16 14 12 18 18 Si 1.86794 * 119.99812 * 359.97438 * 16 14 12 19 19 H 1.48508 * 109.47170 * 90.00497 * 18 16 14 20 20 H 1.48502 * 109.47183 * 210.00538 * 18 16 14 21 21 H 1.48499 * 109.47443 * 330.00285 * 18 16 14 22 22 C 1.47422 * 125.64435 * 179.97438 * 9 7 6 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 27 27 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 28 28 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 29 29 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 30 30 H 1.09003 * 109.46642 * 299.99979 * 6 5 4 31 31 H 1.09004 * 109.47116 * 59.99483 * 6 5 4 32 32 H 1.09004 * 109.88464 * 298.39431 * 10 9 7 33 33 H 1.09000 * 109.88464 * 59.55958 * 10 9 7 34 34 H 1.09000 * 110.84741 * 219.67125 * 11 10 9 35 35 H 1.08998 * 110.66621 * 96.52408 * 11 10 9 36 36 H 0.96997 * 119.99995 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.36840 * 322.93579 * 22 9 7 38 38 H 1.09005 * 110.36606 * 85.14746 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4190 -1.3246 7 6 5.7193 -0.2254 -2.6442 8 8 4.8347 -0.5187 -3.4201 9 7 7.0050 -0.4758 -2.9620 10 6 8.1711 -0.1674 -2.1214 11 6 9.4238 -0.6565 -2.8787 12 6 8.8500 -1.7166 -3.8556 13 1 8.7285 -2.6796 -3.3598 14 6 9.7179 -1.8480 -5.0806 15 1 10.6581 -1.3193 -5.1355 16 6 9.3116 -2.6430 -6.1313 17 7 10.0692 -2.7581 -7.2001 18 14 7.6857 -3.5577 -6.0359 19 1 6.6040 -2.7035 -6.5889 20 1 7.7770 -4.8130 -6.8242 21 1 7.3835 -3.8839 -4.6191 22 6 7.4752 -1.0989 -4.2126 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.9786 2.1764 0.0890 29 1 3.8514 0.5681 0.8409 30 1 5.8629 1.3948 -1.2622 31 1 5.7350 -0.2136 -0.5104 32 1 8.2332 0.9079 -1.9536 33 1 8.0893 -0.6893 -1.1680 34 1 10.1388 -1.1110 -2.1929 35 1 9.8861 0.1638 -3.4278 36 1 9.7835 -3.3177 -7.9391 37 1 6.7817 -1.8763 -4.5332 38 1 7.5870 -0.3460 -4.9928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397839486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:06 Heat of formation + Delta-G solvation = -119.015045 kcal Electronic energy + Delta-G solvation = -19285.972312 eV Core-core repulsion = 16129.189320 eV Total energy + Delta-G solvation = -3156.782992 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.65961 -38.46586 -37.38974 -36.52091 -33.00530 -31.26446 -30.63853 -28.82742 -27.63407 -26.40413 -24.41064 -22.76000 -22.62974 -19.77950 -19.05238 -17.31123 -17.07978 -16.89371 -16.66401 -15.91047 -15.69123 -15.34207 -15.06190 -14.56225 -14.12976 -13.77191 -13.11159 -12.88559 -12.80780 -12.69850 -12.35455 -12.14733 -12.06179 -11.59260 -11.52107 -11.27091 -10.91253 -10.55111 -10.30088 -9.93723 -9.91559 -9.80105 -9.66966 -9.37643 -9.17820 -8.62898 -8.12966 -6.15951 -4.18033 2.94281 2.95621 3.31961 3.39557 3.44124 3.54131 3.94686 4.37067 4.68746 4.82263 4.92119 5.02521 5.09663 5.10599 5.14675 5.15590 5.19046 5.25016 5.26998 5.46267 5.47914 5.50955 5.65867 5.91789 6.12704 6.42034 6.52791 6.64890 6.66879 6.82323 6.90239 7.03944 7.31969 7.62566 7.97724 8.40907 8.55955 8.86706 9.45388 10.96328 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.004351 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.122461 B = 6433.782917 C = 7104.223069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.050 3.950 7 C 0.520 3.480 8 O -0.528 6.528 9 N -0.615 5.615 10 C 0.098 3.902 11 C -0.116 4.116 12 C 0.008 3.992 13 H 0.042 0.958 14 C -0.514 4.514 15 H 0.080 0.920 16 C 0.076 3.924 17 N -0.894 5.894 18 Si 0.872 3.128 19 H -0.272 1.272 20 H -0.289 1.289 21 H -0.264 1.264 22 C 0.096 3.904 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.266 0.734 37 H 0.060 0.940 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.729 9.206 17.381 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.273 6.273 6 C -0.030 4.030 7 C 0.307 3.693 8 O -0.405 6.405 9 N -0.351 5.351 10 C -0.026 4.026 11 C -0.154 4.154 12 C -0.012 4.012 13 H 0.060 0.940 14 C -0.551 4.551 15 H 0.098 0.902 16 C -0.127 4.127 17 N -0.531 5.531 18 Si 0.700 3.300 19 H -0.198 1.198 20 H -0.216 1.216 21 H -0.189 1.189 22 C -0.025 4.025 23 H 0.104 0.896 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.297 8.757 16.649 22.474 hybrid contribution -0.884 -0.134 0.172 0.911 sum -13.181 8.623 16.821 23.044 Atomic orbital electron populations 1.22744 0.81128 1.02904 0.99736 1.87996 1.19555 1.27165 1.95332 1.22539 0.92248 0.85660 1.00848 1.22577 0.93655 0.97561 0.87811 1.88092 1.19874 1.81972 1.37396 1.22197 0.83568 1.00603 0.96594 1.19813 0.81715 0.79828 0.87924 1.90713 1.46140 1.52081 1.51521 1.48729 1.04567 1.60651 1.21104 1.22144 0.86830 0.99368 0.94208 1.22569 0.94663 1.00102 0.98076 1.20371 0.90749 0.94020 0.96014 0.94006 1.20835 1.06096 1.29390 0.98820 0.90196 1.24999 0.96760 0.95743 0.95164 1.69874 1.37641 1.39160 1.06432 0.87066 0.84399 0.79801 0.78753 1.19796 1.21612 1.18938 1.23220 0.97408 0.96869 0.84996 0.89573 0.93958 0.94315 0.92224 0.91787 0.91612 0.92267 0.90556 0.90473 0.92141 0.92156 0.91014 0.90703 0.92374 0.92227 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.86 10.67 -40.08 -0.43 -5.29 16 3 C 0.06 0.63 6.32 37.16 0.23 0.87 16 4 C 0.06 0.63 6.32 37.16 0.23 0.87 16 5 O -0.36 -5.54 9.84 -59.73 -0.59 -6.13 16 6 C 0.05 0.70 5.61 36.00 0.20 0.91 16 7 C 0.52 10.13 7.93 -10.98 -0.09 10.05 16 8 O -0.53 -12.82 16.76 -14.35 -0.24 -13.06 16 9 N -0.61 -11.80 3.33 -170.53 -0.57 -12.37 16 10 C 0.10 1.45 6.49 -3.06 -0.02 1.43 16 11 C -0.12 -2.03 6.39 -24.89 -0.16 -2.19 16 12 C 0.01 0.18 2.41 -89.63 -0.22 -0.03 16 13 H 0.04 0.97 7.42 -51.93 -0.39 0.59 16 14 C -0.51 -13.83 9.13 -34.44 -0.31 -14.15 16 15 H 0.08 2.29 8.03 -52.49 -0.42 1.87 16 16 C 0.08 2.17 5.46 -17.82 -0.10 2.07 16 17 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 18 Si 0.87 22.21 24.50 -169.99 -4.16 18.04 16 19 H -0.27 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.26 -6.58 6.49 56.52 0.37 -6.21 16 22 C 0.10 2.19 5.14 -2.54 -0.01 2.17 16 23 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.06 1.49 4.87 -51.93 -0.25 1.23 16 38 H 0.07 1.70 8.03 -51.93 -0.42 1.28 16 LS Contribution 314.36 15.07 4.74 4.74 Total: -1.00 -35.05 314.36 -5.74 -40.78 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -6.14 Total: -4.02 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 0.88 Total: 3.40 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.21 Total: -38.46 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -1.26 Total: -24.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.16 Total: 18.04 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.05 -5.74 -40.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397839486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.232 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds