Wall clock time and date at job start Mon Mar 30 2020 04:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 O 1.42903 * 109.47300 * 65.00013 * 4 3 2 6 6 C 1.42902 * 113.99996 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.46861 * 179.97438 * 6 5 4 8 8 O 1.21273 * 120.00197 * 359.97438 * 7 6 5 9 9 N 1.34785 * 119.99475 * 179.97438 * 7 6 5 10 10 C 1.47015 * 125.64986 * 359.69354 * 9 7 6 11 11 C 1.54337 * 107.26415 * 178.84802 * 10 9 7 12 12 C 1.55155 * 103.01932 * 338.13783 * 11 10 9 13 13 H 1.08995 * 111.00842 * 277.22934 * 12 11 10 14 14 C 1.50702 * 111.00074 * 153.38266 * 12 11 10 15 15 H 1.08000 * 120.00022 * 6.34754 * 14 12 11 16 16 C 1.37880 * 119.99952 * 186.35498 * 14 12 11 17 17 N 1.31514 * 119.99997 * 180.02562 * 16 14 12 18 18 Si 1.86794 * 119.99812 * 359.97438 * 16 14 12 19 19 H 1.48508 * 109.47170 * 90.00497 * 18 16 14 20 20 H 1.48502 * 109.47183 * 210.00538 * 18 16 14 21 21 H 1.48499 * 109.47443 * 330.00285 * 18 16 14 22 22 C 1.47422 * 125.64435 * 179.97438 * 9 7 6 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 27 27 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 28 28 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 29 29 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 30 30 H 1.09003 * 109.46642 * 299.99979 * 6 5 4 31 31 H 1.09004 * 109.47116 * 59.99483 * 6 5 4 32 32 H 1.09004 * 109.88464 * 298.39431 * 10 9 7 33 33 H 1.09000 * 109.88464 * 59.55958 * 10 9 7 34 34 H 1.09000 * 110.84741 * 219.67125 * 11 10 9 35 35 H 1.08998 * 110.66621 * 96.52408 * 11 10 9 36 36 H 0.96997 * 119.99995 * 179.97438 * 17 16 14 37 37 H 1.09001 * 110.36840 * 322.93579 * 22 9 7 38 38 H 1.09005 * 110.36606 * 85.14746 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4190 -1.3246 7 6 5.7193 -0.2254 -2.6442 8 8 4.8347 -0.5187 -3.4201 9 7 7.0050 -0.4758 -2.9620 10 6 8.1711 -0.1674 -2.1214 11 6 9.4238 -0.6565 -2.8787 12 6 8.8500 -1.7166 -3.8556 13 1 8.7285 -2.6796 -3.3598 14 6 9.7179 -1.8480 -5.0806 15 1 10.6581 -1.3193 -5.1355 16 6 9.3116 -2.6430 -6.1313 17 7 10.0692 -2.7581 -7.2001 18 14 7.6857 -3.5577 -6.0359 19 1 6.6040 -2.7035 -6.5889 20 1 7.7770 -4.8130 -6.8242 21 1 7.3835 -3.8839 -4.6191 22 6 7.4752 -1.0989 -4.2126 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.9786 2.1764 0.0890 29 1 3.8514 0.5681 0.8409 30 1 5.8629 1.3948 -1.2622 31 1 5.7350 -0.2136 -0.5104 32 1 8.2332 0.9079 -1.9536 33 1 8.0893 -0.6893 -1.1680 34 1 10.1388 -1.1110 -2.1929 35 1 9.8861 0.1638 -3.4278 36 1 9.7835 -3.3177 -7.9391 37 1 6.7817 -1.8763 -4.5332 38 1 7.5870 -0.3460 -4.9928 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397839486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:05 Heat of formation + Delta-G solvation = -145.563578 kcal Electronic energy + Delta-G solvation = -19287.123542 eV Core-core repulsion = 16129.189320 eV Total energy + Delta-G solvation = -3157.934223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09914 -39.40406 -38.59612 -37.80124 -35.01048 -32.93343 -31.55357 -30.32438 -28.91050 -27.15453 -26.21032 -24.10213 -23.50157 -21.52827 -20.46739 -18.96408 -18.46463 -17.86350 -17.82369 -17.12876 -16.89036 -16.35297 -16.27164 -15.90737 -15.68712 -15.16149 -14.86619 -14.48373 -14.15213 -13.94239 -13.55635 -13.34109 -13.22465 -12.93695 -12.90300 -12.42400 -12.36048 -12.08168 -12.01817 -11.63424 -11.45846 -11.20770 -10.91347 -10.80287 -10.71361 -10.62299 -9.65534 -8.38255 -6.40795 1.23975 1.30368 1.35074 1.52862 1.71729 2.22906 2.86846 2.90463 2.98062 3.53711 3.89430 4.04192 4.10539 4.18788 4.20877 4.26087 4.36482 4.42343 4.44112 4.46431 4.55963 4.58453 4.64139 4.68358 4.77900 4.83794 4.93069 5.12667 5.20287 5.32774 5.52311 5.64464 6.06081 6.24182 6.27182 6.56278 6.69052 7.10611 7.25318 8.77906 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.004351 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.122461 B = 6433.782917 C = 7104.223069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.056 3.944 4 C 0.054 3.946 5 O -0.399 6.399 6 C 0.062 3.938 7 C 0.509 3.491 8 O -0.592 6.592 9 N -0.617 5.617 10 C 0.099 3.901 11 C -0.110 4.110 12 C 0.000 4.000 13 H 0.040 0.960 14 C -0.506 4.506 15 H 0.055 0.945 16 C 0.029 3.971 17 N -0.938 5.938 18 Si 0.923 3.077 19 H -0.285 1.285 20 H -0.285 1.285 21 H -0.255 1.255 22 C 0.100 3.900 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.267 0.733 37 H 0.031 0.969 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 10.614 20.990 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.020 4.020 4 C -0.021 4.021 5 O -0.319 6.319 6 C -0.017 4.017 7 C 0.299 3.701 8 O -0.472 6.472 9 N -0.351 5.351 10 C -0.022 4.022 11 C -0.148 4.148 12 C -0.019 4.019 13 H 0.058 0.942 14 C -0.544 4.544 15 H 0.073 0.927 16 C -0.170 4.170 17 N -0.578 5.578 18 Si 0.750 3.250 19 H -0.212 1.212 20 H -0.211 1.211 21 H -0.180 1.180 22 C -0.023 4.023 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.663 10.181 20.317 26.015 hybrid contribution -0.744 -0.501 -0.923 1.286 sum -13.407 9.680 19.395 25.487 Atomic orbital electron populations 1.22893 0.79728 1.03495 1.00881 1.87936 1.21376 1.29056 1.95602 1.22785 0.92288 0.84890 1.02052 1.22914 0.93858 0.99207 0.86157 1.88047 1.20702 1.83000 1.40132 1.22227 0.83657 1.02548 0.93292 1.20984 0.80746 0.78860 0.89473 1.90679 1.47913 1.54709 1.53914 1.48796 1.06058 1.60044 1.20206 1.22437 0.83276 1.02375 0.94148 1.22546 0.96497 0.98276 0.97471 1.20298 0.90396 0.95769 0.95457 0.94172 1.21168 1.05598 1.27507 1.00144 0.92655 1.25630 0.99149 0.97005 0.95239 1.69976 1.39435 1.40915 1.07454 0.86239 0.80978 0.78681 0.79058 1.21184 1.21111 1.17969 1.22784 0.96908 0.95885 0.86731 0.89408 0.94019 0.91901 0.93169 0.88284 0.88221 0.91101 0.86485 0.87320 0.88109 0.88358 0.88418 0.91227 0.92318 0.95037 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -10.15 10.67 -144.34 -1.54 -11.69 16 3 C 0.06 0.98 6.32 71.98 0.45 1.44 16 4 C 0.05 0.94 6.32 71.98 0.45 1.39 16 5 O -0.40 -11.46 9.84 -125.55 -1.24 -12.69 16 6 C 0.06 1.47 5.61 71.23 0.40 1.87 16 7 C 0.51 18.92 7.93 87.65 0.69 19.61 16 8 O -0.59 -29.06 16.76 16.03 0.27 -28.79 16 9 N -0.62 -22.23 3.33 -811.82 -2.70 -24.93 16 10 C 0.10 2.45 6.49 86.73 0.56 3.01 16 11 C -0.11 -3.50 6.39 31.79 0.20 -3.29 16 12 C 0.00 0.02 2.41 -10.16 -0.02 -0.01 16 13 H 0.04 1.81 7.42 -2.39 -0.02 1.79 16 14 C -0.51 -27.63 9.13 25.60 0.23 -27.39 16 15 H 0.06 3.23 8.03 -2.91 -0.02 3.21 16 16 C 0.03 1.66 5.46 84.66 0.46 2.12 16 17 N -0.94 -57.99 13.96 21.45 0.30 -57.69 16 18 Si 0.92 47.22 24.50 68.60 1.68 48.91 16 19 H -0.29 -15.05 7.11 99.48 0.71 -14.35 16 20 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 21 H -0.26 -12.51 6.49 99.48 0.65 -11.87 16 22 C 0.10 4.54 5.14 86.85 0.45 4.99 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.07 2.28 8.03 -2.39 -0.02 2.26 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.03 1.60 4.87 -2.39 -0.01 1.58 16 38 H 0.05 2.52 8.03 -2.38 -0.02 2.50 16 Total: -1.00 -81.40 314.36 2.87 -78.52 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: 0.96 Total: 2.94 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.14 Total: 5.42 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -2.40 Total: -82.62 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -2.51 Total: -53.17 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.68 Total: 48.91 kcal Total: -81.40 2.87 -78.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397839486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.039 kcal (2) G-P(sol) polarization free energy of solvation -81.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds