Wall clock time and date at job start Mon Mar 30 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48504 * 109.46954 * 270.00203 * 3 2 1 5 5 H 1.48500 * 109.46963 * 29.99832 * 3 2 1 6 6 H 1.48495 * 109.47218 * 149.99601 * 3 2 1 7 7 C 1.37883 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99651 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00195 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.46841 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99735 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 65.00374 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47380 * 180.02562 * 15 14 13 17 17 O 1.42899 * 110.01576 * 64.29998 * 16 15 14 18 18 C 1.54264 * 110.03180 * 302.90999 * 16 15 14 19 19 C 1.54970 * 104.15936 * 217.13521 * 18 16 15 20 20 C 1.54889 * 102.77266 * 37.88977 * 19 18 16 21 21 C 1.53876 * 110.03212 * 185.69217 * 16 15 14 22 22 H 0.96994 * 120.00605 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47243 * 60.00652 * 9 7 2 24 24 H 1.08996 * 109.46912 * 299.99996 * 9 7 2 25 25 H 1.09003 * 109.46726 * 60.00388 * 11 10 9 26 26 H 1.09002 * 109.47214 * 300.00341 * 11 10 9 27 27 H 1.08992 * 109.47056 * 305.00044 * 12 11 10 28 28 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 29 29 H 1.00899 * 110.99484 * 303.95475 * 13 12 11 30 30 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 31 31 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 32 32 H 1.09007 * 109.47219 * 300.00436 * 15 14 13 33 33 H 1.09005 * 109.47157 * 59.99991 * 15 14 13 34 34 H 0.96702 * 113.99922 * 300.70139 * 17 16 15 35 35 H 1.08999 * 110.48601 * 335.77979 * 18 16 15 36 36 H 1.09003 * 110.49188 * 98.42389 * 18 16 15 37 37 H 1.08992 * 110.71822 * 279.57257 * 19 18 16 38 38 H 1.08996 * 110.76268 * 156.21958 * 19 18 16 39 39 H 1.09003 * 110.47773 * 203.40390 * 20 19 18 40 40 H 1.08992 * 110.48961 * 80.76583 * 20 19 18 41 41 H 1.09005 * 110.02649 * 238.56742 * 21 16 15 42 42 H 1.09002 * 110.03392 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4125 -2.6541 0.0009 12 6 5.8070 -4.1323 0.0015 13 7 5.3677 -4.7568 -1.2536 14 6 5.7309 -6.1797 -1.2888 15 6 5.2575 -6.7944 -2.6076 16 6 5.6351 -8.2766 -2.6441 17 8 4.9386 -8.9843 -1.6165 18 6 7.1579 -8.4386 -2.4583 19 6 7.5308 -9.6163 -3.3940 20 6 6.6202 -9.3780 -4.6240 21 6 5.2931 -8.8739 -4.0203 22 1 -0.4851 0.8399 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 5.8152 -2.1706 0.8910 26 1 5.8152 -2.1704 -0.8890 27 1 5.3313 -4.6350 0.8434 28 1 6.8899 -4.2194 0.0910 29 1 4.3759 -4.6329 -1.3912 30 1 6.8132 -6.2806 -1.2085 31 1 5.2549 -6.6970 -0.4558 32 1 4.1750 -6.6935 -2.6876 33 1 5.7331 -6.2772 -3.4410 34 1 5.1211 -8.6613 -0.7234 35 1 7.6781 -7.5304 -2.7626 36 1 7.3920 -8.6845 -1.4225 37 1 7.3007 -10.5715 -2.9222 38 1 8.5824 -9.5672 -3.6766 39 1 6.4624 -10.3094 -5.1679 40 1 7.0532 -8.6216 -5.2785 41 1 4.5965 -9.7042 -3.9042 42 1 4.8576 -8.1080 -4.6621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404210452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:52 Heat of formation + Delta-G solvation = -119.979929 kcal Electronic energy + Delta-G solvation = -19164.404723 eV Core-core repulsion = 16143.412985 eV Total energy + Delta-G solvation = -3020.991738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70312 -37.39826 -35.69099 -35.00439 -32.70207 -31.57277 -29.19544 -28.81491 -27.40729 -25.55927 -22.42501 -21.92898 -21.51198 -20.89104 -19.88646 -16.91708 -16.72934 -16.38858 -15.86148 -15.77296 -15.38361 -14.92765 -14.54562 -14.21832 -13.82657 -13.54110 -13.33953 -12.97132 -12.64053 -12.39484 -12.17442 -11.91318 -11.63466 -11.58850 -11.39741 -11.36122 -11.15370 -10.93087 -10.83802 -10.81194 -10.64371 -10.35559 -9.96578 -9.87756 -9.20457 -8.87156 -8.48942 -8.30843 -6.12936 -4.12198 3.24282 3.31129 3.32553 3.98263 4.11205 4.34230 4.34481 4.40724 4.66369 4.71070 4.94531 5.02766 5.05258 5.18598 5.20298 5.30760 5.37740 5.40387 5.45633 5.50455 5.57567 5.62338 5.69297 5.77237 5.84637 5.86440 5.94503 6.00739 6.06505 6.08190 6.13869 6.19619 6.59796 6.98564 7.12604 7.51245 7.54809 7.59499 7.99096 8.64440 8.97573 9.46236 11.00078 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.003134 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.951722 B = 8932.111007 C = 9221.927041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.384 6.384 11 C 0.057 3.943 12 C 0.066 3.934 13 N -0.688 5.688 14 C 0.056 3.944 15 C -0.142 4.142 16 C 0.131 3.869 17 O -0.560 6.560 18 C -0.150 4.150 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.114 4.114 22 H 0.267 0.733 23 H 0.002 0.998 24 H 0.000 1.000 25 H 0.042 0.958 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.357 0.643 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.374 0.626 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.643 -16.704 -5.581 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.304 6.304 11 C -0.021 4.021 12 C -0.064 4.064 13 N -0.321 5.321 14 C -0.074 4.074 15 C -0.180 4.180 16 C 0.090 3.910 17 O -0.366 6.366 18 C -0.188 4.188 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.151 4.151 22 H 0.077 0.923 23 H 0.020 0.980 24 H 0.017 0.983 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.177 0.823 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.222 0.778 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.666 -16.854 -6.436 24.561 hybrid contribution 0.127 1.221 1.165 1.692 sum 16.793 -15.633 -5.272 23.541 Atomic orbital electron populations 1.69871 1.06071 1.27128 1.50307 1.24773 0.94811 0.98799 0.94609 0.86836 0.80308 0.83705 0.78806 1.19880 1.20794 1.19124 1.20887 0.88291 0.95290 1.51294 0.90037 1.20576 0.96087 0.79389 0.94358 1.87846 1.17659 1.29780 1.95091 1.22384 0.84886 0.95183 0.99600 1.21933 0.99470 0.94240 0.90722 1.60480 1.23868 1.12432 1.35303 1.21979 1.00408 0.88838 0.96160 1.22313 1.02502 0.94460 0.98755 1.21864 0.90293 0.90308 0.88550 1.86557 1.71016 1.61178 1.17873 1.23122 0.96153 0.99221 1.00266 1.22470 0.99134 0.98516 0.95906 1.22357 0.95253 1.01019 0.97526 1.22156 0.98168 1.01293 0.93502 0.92342 0.98032 0.98279 0.93979 0.93391 0.94613 0.90654 0.82317 0.91193 0.95679 0.90881 0.90001 0.77832 0.90464 0.91255 0.91384 0.91649 0.91505 0.91410 0.90518 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 7 C -0.52 -15.49 9.99 -34.44 -0.34 -15.83 16 8 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 9 C 0.17 4.36 4.76 36.00 0.17 4.53 16 10 O -0.38 -8.83 9.85 -35.23 -0.35 -9.18 16 11 C 0.06 1.00 6.28 37.16 0.23 1.24 16 12 C 0.07 0.94 6.11 -3.82 -0.02 0.92 16 13 N -0.69 -9.80 6.50 -113.78 -0.74 -10.54 16 14 C 0.06 0.61 5.19 -3.82 -0.02 0.59 16 15 C -0.14 -1.50 4.39 -26.73 -0.12 -1.62 16 16 C 0.13 1.26 1.06 -89.50 -0.09 1.16 16 17 O -0.56 -6.03 12.89 -35.23 -0.45 -6.48 16 18 C -0.15 -1.22 4.95 -25.03 -0.12 -1.35 16 19 C -0.12 -0.93 6.91 -24.69 -0.17 -1.11 16 20 C -0.12 -0.95 6.83 -25.08 -0.17 -1.12 16 21 C -0.11 -1.05 6.27 -25.62 -0.16 -1.21 16 22 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 24 H 0.00 -0.01 7.57 -51.93 -0.39 -0.41 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.36 5.82 8.29 -39.29 -0.33 5.49 16 30 H 0.07 0.70 6.90 -51.93 -0.36 0.34 16 31 H 0.03 0.27 6.89 -51.93 -0.36 -0.09 16 32 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.37 3.07 7.54 45.56 0.34 3.41 16 35 H 0.08 0.62 7.45 -51.93 -0.39 0.24 16 36 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.77 7.95 -51.93 -0.41 0.35 16 42 H 0.08 0.67 7.67 -51.93 -0.40 0.27 16 LS Contribution 332.92 15.07 5.02 5.02 Total: -1.00 -31.94 332.92 -8.24 -40.18 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.90 Total: 2.90 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -0.92 Total: -11.77 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.03 Total: -37.47 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.80 Total: -15.66 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.94 -8.24 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404210452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.801 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds