Wall clock time and date at job start Mon Mar 30 2020 04:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00061 * 2 1 4 4 H 1.48504 * 109.46954 * 270.00203 * 3 2 1 5 5 H 1.48500 * 109.46963 * 29.99832 * 3 2 1 6 6 H 1.48495 * 109.47218 * 149.99601 * 3 2 1 7 7 C 1.37883 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99651 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00195 * 180.02562 * 7 2 1 10 10 O 1.42901 * 109.46841 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99735 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46911 * 179.97438 * 11 10 9 13 13 N 1.46906 * 109.47053 * 65.00374 * 12 11 10 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.47035 * 179.97438 * 14 13 12 16 16 C 1.52998 * 109.47380 * 180.02562 * 15 14 13 17 17 O 1.42899 * 110.01576 * 64.29998 * 16 15 14 18 18 C 1.54264 * 110.03180 * 302.90999 * 16 15 14 19 19 C 1.54970 * 104.15936 * 217.13521 * 18 16 15 20 20 C 1.54889 * 102.77266 * 37.88977 * 19 18 16 21 21 C 1.53876 * 110.03212 * 185.69217 * 16 15 14 22 22 H 0.96994 * 120.00605 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47243 * 60.00652 * 9 7 2 24 24 H 1.08996 * 109.46912 * 299.99996 * 9 7 2 25 25 H 1.09003 * 109.46726 * 60.00388 * 11 10 9 26 26 H 1.09002 * 109.47214 * 300.00341 * 11 10 9 27 27 H 1.08992 * 109.47056 * 305.00044 * 12 11 10 28 28 H 1.09004 * 109.47006 * 185.00161 * 12 11 10 29 29 H 1.00899 * 110.99484 * 303.95475 * 13 12 11 30 30 H 1.08996 * 109.47424 * 299.99656 * 14 13 12 31 31 H 1.09002 * 109.47411 * 60.00282 * 14 13 12 32 32 H 1.09007 * 109.47219 * 300.00436 * 15 14 13 33 33 H 1.09005 * 109.47157 * 59.99991 * 15 14 13 34 34 H 0.96702 * 113.99922 * 300.70139 * 17 16 15 35 35 H 1.08999 * 110.48601 * 335.77979 * 18 16 15 36 36 H 1.09003 * 110.49188 * 98.42389 * 18 16 15 37 37 H 1.08992 * 110.71822 * 279.57257 * 19 18 16 38 38 H 1.08996 * 110.76268 * 156.21958 * 19 18 16 39 39 H 1.09003 * 110.47773 * 203.40390 * 20 19 18 40 40 H 1.08992 * 110.48961 * 80.76583 * 20 19 18 41 41 H 1.09005 * 110.02649 * 238.56742 * 21 16 15 42 42 H 1.09002 * 110.03392 * 359.97438 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 3.9879 -2.5413 0.0010 11 6 5.4125 -2.6541 0.0009 12 6 5.8070 -4.1323 0.0015 13 7 5.3677 -4.7568 -1.2536 14 6 5.7309 -6.1797 -1.2888 15 6 5.2575 -6.7944 -2.6076 16 6 5.6351 -8.2766 -2.6441 17 8 4.9386 -8.9843 -1.6165 18 6 7.1579 -8.4386 -2.4583 19 6 7.5308 -9.6163 -3.3940 20 6 6.6202 -9.3780 -4.6240 21 6 5.2931 -8.8739 -4.0203 22 1 -0.4851 0.8399 -0.0004 23 1 3.8745 -0.6801 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 5.8152 -2.1706 0.8910 26 1 5.8152 -2.1704 -0.8890 27 1 5.3313 -4.6350 0.8434 28 1 6.8899 -4.2194 0.0910 29 1 4.3759 -4.6329 -1.3912 30 1 6.8132 -6.2806 -1.2085 31 1 5.2549 -6.6970 -0.4558 32 1 4.1750 -6.6935 -2.6876 33 1 5.7331 -6.2772 -3.4410 34 1 5.1211 -8.6613 -0.7234 35 1 7.6781 -7.5304 -2.7626 36 1 7.3920 -8.6845 -1.4225 37 1 7.3007 -10.5715 -2.9222 38 1 8.5824 -9.5672 -3.6766 39 1 6.4624 -10.3094 -5.1679 40 1 7.0532 -8.6216 -5.2785 41 1 4.5965 -9.7042 -3.9042 42 1 4.8576 -8.1080 -4.6621 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404210452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:51 Heat of formation + Delta-G solvation = -144.435797 kcal Electronic energy + Delta-G solvation = -19165.465209 eV Core-core repulsion = 16143.412985 eV Total energy + Delta-G solvation = -3022.052224 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.46204 -38.94174 -36.88540 -35.79350 -34.86434 -32.67447 -30.48707 -29.79328 -28.92403 -26.50471 -24.01402 -23.27002 -22.78682 -21.57170 -20.65282 -19.06993 -17.65999 -17.57927 -16.95636 -16.93703 -16.51513 -16.29415 -16.09222 -15.41022 -14.93785 -14.77747 -14.50880 -14.18963 -13.96888 -13.50894 -13.46278 -13.15339 -12.86535 -12.75454 -12.51522 -12.41693 -12.19952 -12.04021 -11.99609 -11.85181 -11.79880 -11.44733 -11.37951 -11.24182 -10.93712 -10.75583 -10.36499 -9.40005 -8.38590 -6.46758 1.32996 1.36058 1.46874 2.28590 2.94131 3.07180 3.14281 3.27441 3.66041 3.66945 3.98984 4.05568 4.16646 4.24392 4.34509 4.39286 4.50651 4.52347 4.56788 4.59185 4.67626 4.73624 4.79347 4.82701 4.89401 4.93567 5.00472 5.04236 5.11907 5.15589 5.19655 5.22061 5.38602 5.42504 5.46743 5.91563 6.08654 6.32192 6.57283 6.72944 6.82280 7.17874 8.78547 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.003134 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.951722 B = 8932.111007 C = 9221.927041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.546 4.546 8 H 0.029 0.971 9 C 0.182 3.818 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.071 3.929 13 N -0.698 5.698 14 C 0.059 3.941 15 C -0.135 4.135 16 C 0.130 3.870 17 O -0.576 6.576 18 C -0.146 4.146 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.120 4.120 22 H 0.273 0.727 23 H 0.012 0.988 24 H 0.010 0.990 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.030 0.970 28 H 0.109 0.891 29 H 0.340 0.660 30 H 0.089 0.911 31 H 0.029 0.971 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.383 0.617 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.604 -15.952 -5.606 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.168 1.168 7 C -0.584 4.584 8 H 0.048 0.952 9 C 0.106 3.894 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.058 4.058 13 N -0.329 5.329 14 C -0.070 4.070 15 C -0.173 4.173 16 C 0.089 3.911 17 O -0.385 6.385 18 C -0.184 4.184 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.157 4.157 22 H 0.082 0.918 23 H 0.030 0.970 24 H 0.028 0.972 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.127 0.873 29 H 0.158 0.842 30 H 0.107 0.893 31 H 0.047 0.953 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.232 0.768 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.656 -16.134 -6.454 26.236 hybrid contribution -0.849 0.864 1.167 1.682 sum 18.807 -15.270 -5.287 24.796 Atomic orbital electron populations 1.70029 1.08288 1.28825 1.51053 1.25864 0.95817 1.03502 0.93438 0.85586 0.79425 0.77404 0.79783 1.18430 1.19835 1.16820 1.21171 0.91023 0.93811 1.52390 0.95217 1.20282 0.93156 0.80956 0.95008 1.87811 1.21359 1.28334 1.95272 1.22732 0.81759 0.97733 1.00585 1.21968 1.01245 0.92068 0.90533 1.60552 1.22585 1.14434 1.35332 1.22035 1.01479 0.87101 0.96388 1.22242 1.01071 0.95392 0.98636 1.21924 0.91422 0.89282 0.88449 1.86539 1.71595 1.61597 1.18753 1.23094 0.94605 0.99736 1.00944 1.22482 0.99905 0.97995 0.95554 1.22365 0.94245 1.01539 0.97738 1.22216 0.98999 1.00856 0.93646 0.91775 0.97010 0.97226 0.92301 0.92904 0.95148 0.87293 0.84231 0.89272 0.95308 0.93032 0.90011 0.76770 0.89953 0.90532 0.91845 0.90207 0.90810 0.90620 0.91747 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.68 13.96 21.45 0.30 -59.39 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.96 43.49 27.47 68.60 1.88 45.38 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 7 C -0.55 -33.47 9.99 25.60 0.26 -33.21 16 8 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 9 C 0.18 9.14 4.76 71.23 0.34 9.48 16 10 O -0.41 -18.71 9.85 -148.98 -1.47 -20.18 16 11 C 0.05 1.62 6.28 71.98 0.45 2.07 16 12 C 0.07 1.89 6.11 86.30 0.53 2.41 16 13 N -0.70 -19.19 6.50 -513.88 -3.34 -22.53 16 14 C 0.06 1.22 5.19 86.31 0.45 1.67 16 15 C -0.14 -2.81 4.39 30.60 0.13 -2.67 16 16 C 0.13 2.40 1.06 -10.07 -0.01 2.38 16 17 O -0.58 -12.18 12.89 -148.98 -1.92 -14.10 16 18 C -0.15 -2.09 4.95 31.70 0.16 -1.93 16 19 C -0.12 -1.61 6.91 31.91 0.22 -1.39 16 20 C -0.12 -1.68 6.83 31.67 0.22 -1.46 16 21 C -0.12 -2.16 6.27 31.32 0.20 -1.96 16 22 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 23 H 0.01 0.58 7.20 -2.39 -0.02 0.57 16 24 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 25 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.34 11.27 8.29 -89.69 -0.74 10.53 16 30 H 0.09 1.53 6.90 -2.39 -0.02 1.51 16 31 H 0.03 0.58 6.89 -2.39 -0.02 0.57 16 32 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.38 6.03 7.54 -74.06 -0.56 5.48 16 35 H 0.08 1.11 7.45 -2.39 -0.02 1.09 16 36 H 0.08 0.99 8.05 -2.39 -0.02 0.97 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.06 1.30 7.95 -2.38 -0.02 1.29 16 42 H 0.07 1.32 7.67 -2.39 -0.02 1.30 16 Total: -1.00 -70.36 332.92 -1.52 -71.88 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.37 Total: 22.42 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 3.40 Total: -23.47 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -3.04 Total: -81.92 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -3.39 Total: -34.28 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Total: -70.36 -1.52 -71.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404210452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.559 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds