Wall clock time and date at job start Mon Mar 30 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.52999 * 109.46957 * 60.00554 * 3 2 1 5 5 C 1.52997 * 109.47356 * 299.99936 * 3 2 1 6 6 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 7 7 C 1.52999 * 109.46811 * 65.00285 * 6 3 2 8 8 N 1.46896 * 109.47091 * 179.97438 * 7 6 3 9 9 C 1.48540 * 111.00135 * 52.60724 * 8 7 6 10 10 C 1.54935 * 103.23052 * 159.72278 * 9 8 7 11 11 C 1.54598 * 102.91811 * 322.58219 * 10 9 8 12 12 O 1.42896 * 110.39264 * 262.99911 * 11 10 9 13 13 C 1.50699 * 110.30636 * 140.87453 * 11 10 9 14 14 H 1.08004 * 120.00227 * 244.28323 * 13 11 10 15 15 C 1.37875 * 119.99881 * 64.28433 * 13 11 10 16 16 N 1.31518 * 120.00422 * 359.97438 * 15 13 11 17 17 Si 1.86811 * 119.99953 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47034 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46486 * 120.00048 * 17 15 13 20 20 H 1.48499 * 109.46787 * 240.00031 * 17 15 13 21 21 C 1.47904 * 111.00258 * 169.99816 * 8 7 6 22 22 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 23 23 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 25 25 H 1.09000 * 109.47160 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.46719 * 299.99580 * 4 3 2 27 27 H 1.08993 * 109.47839 * 59.99421 * 4 3 2 28 28 H 1.09001 * 109.47375 * 299.99901 * 5 3 2 29 29 H 1.09002 * 109.46777 * 60.00457 * 5 3 2 30 30 H 1.09000 * 109.47140 * 179.97438 * 5 3 2 31 31 H 1.08992 * 109.47046 * 185.00128 * 6 3 2 32 32 H 1.08997 * 109.47395 * 305.00669 * 6 3 2 33 33 H 1.09009 * 109.47170 * 300.00068 * 7 6 3 34 34 H 1.09001 * 109.47273 * 59.99848 * 7 6 3 35 35 H 1.09006 * 110.65924 * 278.15663 * 9 8 7 36 36 H 1.08994 * 110.66770 * 41.27969 * 9 8 7 37 37 H 1.09000 * 110.71949 * 204.22935 * 10 9 8 38 38 H 1.08993 * 110.87667 * 81.00835 * 10 9 8 39 39 H 0.96704 * 114.00233 * 295.76829 * 12 11 10 40 40 H 0.96990 * 120.00274 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.91673 * 333.51248 * 21 8 7 42 42 H 1.09001 * 109.91374 * 94.80238 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0646 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1846 0.0006 7 6 3.9962 0.5364 -1.3064 8 7 5.4606 0.4210 -1.3062 9 6 5.9406 -0.2612 -0.0770 10 6 7.3541 -0.7556 -0.4748 11 6 7.1696 -1.1791 -1.9502 12 8 6.9480 -2.5879 -2.0398 13 6 8.3776 -0.7877 -2.7616 14 1 8.2833 -0.0599 -3.5540 15 6 9.6033 -1.3588 -2.4925 16 7 9.7184 -2.2448 -1.5273 17 14 11.1008 -0.8743 -3.4988 18 1 10.7084 0.1339 -4.5160 19 1 12.1336 -0.2960 -2.6021 20 1 11.6506 -2.0751 -4.1776 21 6 5.9270 -0.4106 -2.4369 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 2.0025 3.0602 1.2496 26 1 0.4722 2.1507 1.2493 27 1 1.8804 1.5237 2.1393 28 1 1.8804 1.5239 -2.1392 29 1 0.4722 2.1508 -1.2491 30 1 2.0018 3.0606 -1.2489 31 1 3.9784 2.1764 0.0902 32 1 3.8508 0.5684 0.8426 33 1 3.5531 -0.4555 -1.3961 34 1 3.6809 1.1526 -2.1485 35 1 5.9985 0.4409 0.7548 36 1 5.2948 -1.1029 0.1729 37 1 7.6509 -1.6076 0.1368 38 1 8.0843 0.0494 -0.3931 39 1 7.6978 -3.1235 -1.7463 40 1 10.5807 -2.6463 -1.3377 41 1 5.1462 -1.1133 -2.7279 42 1 6.1912 0.2258 -3.2815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592155073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:58 Heat of formation + Delta-G solvation = -98.699733 kcal Electronic energy + Delta-G solvation = -20431.432753 eV Core-core repulsion = 17411.363793 eV Total energy + Delta-G solvation = -3020.068959 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.37329 -38.11781 -35.13260 -33.41885 -32.00475 -30.41557 -28.30085 -27.67210 -27.53929 -26.47209 -24.25022 -22.56005 -20.26439 -19.58112 -19.20741 -17.02866 -16.33867 -15.81346 -15.32091 -14.95022 -14.84323 -14.63565 -13.89243 -13.74880 -13.56450 -13.09462 -12.63654 -12.55972 -12.12641 -12.11376 -11.97312 -11.85367 -11.49006 -11.45786 -11.22267 -10.95115 -10.83376 -10.57184 -10.41623 -10.32788 -10.29855 -10.16198 -9.83592 -9.56845 -9.07003 -8.52608 -8.01539 -7.65087 -6.13783 -4.19611 3.26679 3.34911 3.40012 3.74734 4.37026 4.52514 4.75714 4.83371 5.07710 5.15775 5.20336 5.24007 5.39989 5.44341 5.52221 5.56502 5.64392 5.67719 5.79454 5.87844 5.96119 6.01423 6.10079 6.17236 6.23015 6.31239 6.40229 6.46706 6.56725 6.62243 7.02230 7.16359 7.22561 7.39118 7.60641 7.76411 7.83310 7.94135 8.24128 8.82343 9.47646 9.61105 10.93936 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.043800 B = 0.004381 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.115203 B = 6389.884953 C = 6479.763891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.375 6.375 3 C 0.111 3.889 4 C -0.176 4.176 5 C -0.180 4.180 6 C -0.102 4.102 7 C 0.048 3.952 8 N -0.516 5.516 9 C 0.032 3.968 10 C -0.119 4.119 11 C 0.242 3.758 12 O -0.595 6.595 13 C -0.526 4.526 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.054 3.946 22 H 0.042 0.958 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.383 0.617 40 H 0.265 0.735 41 H 0.035 0.965 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.938 6.946 4.520 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.071 3.929 4 C -0.234 4.234 5 C -0.237 4.237 6 C -0.140 4.140 7 C -0.080 4.080 8 N -0.241 5.241 9 C -0.096 4.096 10 C -0.157 4.157 11 C 0.202 3.798 12 O -0.405 6.405 13 C -0.564 4.564 14 H 0.080 0.920 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.073 4.073 22 H 0.060 0.940 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.234 0.766 40 H 0.075 0.925 41 H 0.053 0.947 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.074 7.402 4.328 17.342 hybrid contribution 0.800 -0.516 -0.171 0.967 sum -14.274 6.887 4.157 16.385 Atomic orbital electron populations 1.22752 0.82163 1.02383 0.99835 1.88038 1.18953 1.27487 1.94947 1.21549 0.94244 0.83108 0.94003 1.22402 1.01390 1.01067 0.98511 1.22482 1.01141 1.01218 0.98886 1.21631 0.90988 1.02275 0.99089 1.22295 0.89165 0.99548 0.97013 1.64867 1.08720 1.47086 1.03401 1.23274 0.97884 0.95766 0.92659 1.22971 0.93095 1.00419 0.99260 1.19362 0.90626 0.78965 0.90813 1.86090 1.45602 1.19115 1.89677 1.21768 0.92948 1.24029 1.17690 0.91951 1.25018 0.99001 0.94604 0.94794 1.69634 1.25371 1.28778 1.30353 0.86416 0.82322 0.78399 0.80124 1.19675 1.20943 1.20956 1.22857 0.96977 0.94073 0.93414 0.93983 0.90003 0.94113 0.91394 0.92433 0.91758 0.91116 0.92643 0.91323 0.89973 0.90988 0.94390 0.91287 0.91872 0.94790 0.91878 0.91519 0.76588 0.92463 0.94657 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.21 101.05 1.03 1.28 16 2 O -0.38 -5.07 9.88 -35.23 -0.35 -5.42 16 3 C 0.11 1.32 0.82 -90.62 -0.07 1.25 16 4 C -0.18 -1.72 8.25 37.16 0.31 -1.42 16 5 C -0.18 -1.89 7.76 37.16 0.29 -1.61 16 6 C -0.10 -1.44 4.17 -26.73 -0.11 -1.55 16 7 C 0.05 0.81 4.43 -3.83 -0.02 0.80 16 8 N -0.52 -10.47 5.40 -230.44 -1.24 -11.71 16 9 C 0.03 0.65 5.10 -1.89 -0.01 0.64 16 10 C -0.12 -2.86 5.50 -24.87 -0.14 -3.00 16 11 C 0.24 6.27 0.99 -90.42 -0.09 6.18 16 12 O -0.59 -16.20 12.93 -35.23 -0.46 -16.65 16 13 C -0.53 -14.55 8.10 -34.44 -0.28 -14.83 16 14 H 0.06 1.72 7.34 -52.48 -0.39 1.34 16 15 C 0.07 1.82 5.26 -17.82 -0.09 1.72 16 16 N -0.90 -24.64 10.88 55.43 0.60 -24.03 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.05 1.25 6.17 -2.75 -0.02 1.24 16 22 H 0.04 0.37 6.42 -51.93 -0.33 0.04 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.04 0.34 6.42 -51.93 -0.33 0.01 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.82 6.35 -51.93 -0.33 0.49 16 29 H 0.05 0.50 6.54 -51.93 -0.34 0.16 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 1.08 6.80 -51.93 -0.35 0.73 16 33 H 0.04 0.71 7.49 -51.92 -0.39 0.32 16 34 H 0.07 1.09 6.35 -51.93 -0.33 0.76 16 35 H 0.06 1.16 7.67 -51.93 -0.40 0.77 16 36 H 0.03 0.71 8.00 -51.93 -0.42 0.29 16 37 H 0.06 1.57 8.06 -51.93 -0.42 1.16 16 38 H 0.07 1.69 7.85 -51.93 -0.41 1.28 16 39 H 0.38 10.53 7.05 45.56 0.32 10.85 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.04 0.82 7.39 -51.93 -0.38 0.43 16 42 H 0.08 1.76 7.39 -51.93 -0.38 1.38 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -28.92 319.38 -7.32 -36.25 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.47 Total: 9.94 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 0.80 Total: -9.29 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: -0.64 Total: -35.75 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.80 Total: -22.07 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.92 -7.32 -36.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.454 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds