Wall clock time and date at job start Mon Mar 30 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.52999 * 109.46957 * 60.00554 * 3 2 1 5 5 C 1.52997 * 109.47356 * 299.99936 * 3 2 1 6 6 C 1.53006 * 109.47036 * 179.97438 * 3 2 1 7 7 C 1.52999 * 109.46811 * 65.00285 * 6 3 2 8 8 N 1.46896 * 109.47091 * 179.97438 * 7 6 3 9 9 C 1.48540 * 111.00135 * 52.60724 * 8 7 6 10 10 C 1.54935 * 103.23052 * 159.72278 * 9 8 7 11 11 C 1.54598 * 102.91811 * 322.58219 * 10 9 8 12 12 O 1.42896 * 110.39264 * 262.99911 * 11 10 9 13 13 C 1.50699 * 110.30636 * 140.87453 * 11 10 9 14 14 H 1.08004 * 120.00227 * 244.28323 * 13 11 10 15 15 C 1.37875 * 119.99881 * 64.28433 * 13 11 10 16 16 N 1.31518 * 120.00422 * 359.97438 * 15 13 11 17 17 Si 1.86811 * 119.99953 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47034 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46486 * 120.00048 * 17 15 13 20 20 H 1.48499 * 109.46787 * 240.00031 * 17 15 13 21 21 C 1.47904 * 111.00258 * 169.99816 * 8 7 6 22 22 H 1.09003 * 109.47182 * 59.99587 * 1 2 3 23 23 H 1.08999 * 109.47444 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47392 * 299.99575 * 1 2 3 25 25 H 1.09000 * 109.47160 * 179.97438 * 4 3 2 26 26 H 1.09002 * 109.46719 * 299.99580 * 4 3 2 27 27 H 1.08993 * 109.47839 * 59.99421 * 4 3 2 28 28 H 1.09001 * 109.47375 * 299.99901 * 5 3 2 29 29 H 1.09002 * 109.46777 * 60.00457 * 5 3 2 30 30 H 1.09000 * 109.47140 * 179.97438 * 5 3 2 31 31 H 1.08992 * 109.47046 * 185.00128 * 6 3 2 32 32 H 1.08997 * 109.47395 * 305.00669 * 6 3 2 33 33 H 1.09009 * 109.47170 * 300.00068 * 7 6 3 34 34 H 1.09001 * 109.47273 * 59.99848 * 7 6 3 35 35 H 1.09006 * 110.65924 * 278.15663 * 9 8 7 36 36 H 1.08994 * 110.66770 * 41.27969 * 9 8 7 37 37 H 1.09000 * 110.71949 * 204.22935 * 10 9 8 38 38 H 1.08993 * 110.87667 * 81.00835 * 10 9 8 39 39 H 0.96704 * 114.00233 * 295.76829 * 12 11 10 40 40 H 0.96990 * 120.00274 * 180.02562 * 16 15 13 41 41 H 1.09006 * 109.91673 * 333.51248 * 21 8 7 42 42 H 1.09001 * 109.91374 * 94.80238 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.5588 2.0646 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1846 0.0006 7 6 3.9962 0.5364 -1.3064 8 7 5.4606 0.4210 -1.3062 9 6 5.9406 -0.2612 -0.0770 10 6 7.3541 -0.7556 -0.4748 11 6 7.1696 -1.1791 -1.9502 12 8 6.9480 -2.5879 -2.0398 13 6 8.3776 -0.7877 -2.7616 14 1 8.2833 -0.0599 -3.5540 15 6 9.6033 -1.3588 -2.4925 16 7 9.7184 -2.2448 -1.5273 17 14 11.1008 -0.8743 -3.4988 18 1 10.7084 0.1339 -4.5160 19 1 12.1336 -0.2960 -2.6021 20 1 11.6506 -2.0751 -4.1776 21 6 5.9270 -0.4106 -2.4369 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 2.0025 3.0602 1.2496 26 1 0.4722 2.1507 1.2493 27 1 1.8804 1.5237 2.1393 28 1 1.8804 1.5239 -2.1392 29 1 0.4722 2.1508 -1.2491 30 1 2.0018 3.0606 -1.2489 31 1 3.9784 2.1764 0.0902 32 1 3.8508 0.5684 0.8426 33 1 3.5531 -0.4555 -1.3961 34 1 3.6809 1.1526 -2.1485 35 1 5.9985 0.4409 0.7548 36 1 5.2948 -1.1029 0.1729 37 1 7.6509 -1.6076 0.1368 38 1 8.0843 0.0494 -0.3931 39 1 7.6978 -3.1235 -1.7463 40 1 10.5807 -2.6463 -1.3377 41 1 5.1462 -1.1133 -2.7279 42 1 6.1912 0.2258 -3.2815 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592155073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:58 Heat of formation + Delta-G solvation = -120.095831 kcal Electronic energy + Delta-G solvation = -20432.360557 eV Core-core repulsion = 17411.363793 eV Total energy + Delta-G solvation = -3020.996764 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54876 -39.66900 -36.88400 -34.62279 -34.12825 -31.92205 -30.01808 -29.09638 -28.38099 -27.54665 -26.09183 -24.02420 -21.73715 -21.27383 -20.56682 -19.11685 -17.28090 -17.13465 -16.91858 -16.51849 -16.23321 -15.97748 -15.64993 -15.32629 -14.61761 -14.31788 -14.06136 -13.89792 -13.81435 -13.39055 -13.28085 -13.15580 -12.84948 -12.80060 -12.54247 -12.42013 -12.38361 -12.25280 -12.21858 -11.99490 -11.86533 -11.59291 -11.30121 -11.03434 -10.60619 -10.43377 -10.09136 -9.32983 -8.20791 -6.34922 1.40626 1.43221 1.54814 2.40325 2.89284 2.99129 3.14755 3.75492 3.90450 3.96519 4.08954 4.21417 4.28210 4.33938 4.47134 4.48780 4.52989 4.55697 4.64679 4.67888 4.72516 4.76670 4.82084 4.89229 4.91017 5.03347 5.07029 5.13078 5.20881 5.23912 5.28679 5.40712 5.43213 5.60284 5.77557 5.98395 6.15665 6.25646 6.39911 6.69825 7.35225 7.45096 8.85759 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.043800 B = 0.004381 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.115203 B = 6389.884953 C = 6479.763891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.407 6.407 3 C 0.108 3.892 4 C -0.172 4.172 5 C -0.178 4.178 6 C -0.098 4.098 7 C 0.052 3.948 8 N -0.515 5.515 9 C 0.045 3.955 10 C -0.111 4.111 11 C 0.225 3.775 12 O -0.604 6.604 13 C -0.554 4.554 14 H 0.055 0.945 15 C 0.026 3.974 16 N -0.917 5.917 17 Si 0.963 3.037 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.279 1.279 21 C 0.061 3.939 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.030 0.970 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.378 0.622 40 H 0.269 0.731 41 H 0.028 0.972 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.799 8.467 4.824 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.328 6.328 3 C 0.069 3.931 4 C -0.229 4.229 5 C -0.235 4.235 6 C -0.135 4.135 7 C -0.075 4.075 8 N -0.240 5.240 9 C -0.083 4.083 10 C -0.150 4.150 11 C 0.185 3.815 12 O -0.414 6.414 13 C -0.592 4.592 14 H 0.073 0.927 15 C -0.173 4.173 16 N -0.557 5.557 17 Si 0.788 3.212 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.205 1.205 21 C -0.067 4.067 22 H 0.070 0.930 23 H 0.104 0.896 24 H 0.074 0.926 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.228 0.772 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.957 8.929 4.639 18.865 hybrid contribution 1.035 -1.025 -0.267 1.481 sum -14.922 7.904 4.372 17.443 Atomic orbital electron populations 1.22924 0.80449 1.03204 1.01030 1.87990 1.20966 1.28568 1.95233 1.21581 0.92592 0.83135 0.95787 1.22357 1.02461 1.01173 0.96908 1.22460 1.02350 1.01283 0.97416 1.21606 0.93078 1.02187 0.96650 1.22352 0.86605 0.99123 0.99465 1.64879 1.11119 1.45797 1.02172 1.23173 0.95346 0.96262 0.93516 1.22769 0.94896 0.99217 0.98137 1.19648 0.91581 0.78368 0.91864 1.86084 1.45397 1.20075 1.89799 1.21993 0.94250 1.24674 1.18276 0.92691 1.25728 1.01444 0.94451 0.95705 1.69714 1.26123 1.28952 1.30947 0.85438 0.78916 0.78114 0.78707 1.19522 1.20259 1.20467 1.22711 0.95734 0.93889 0.94382 0.92991 0.89554 0.92596 0.90125 0.90906 0.92378 0.92602 0.90976 0.90170 0.88787 0.92097 0.96278 0.89992 0.89173 0.95211 0.93459 0.93112 0.77195 0.92129 0.95348 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.21 113.37 1.16 1.51 16 2 O -0.41 -10.46 9.88 -148.98 -1.47 -11.93 16 3 C 0.11 2.36 0.82 -10.79 -0.01 2.35 16 4 C -0.17 -2.87 8.25 71.98 0.59 -2.27 16 5 C -0.18 -3.30 7.76 71.98 0.56 -2.74 16 6 C -0.10 -2.58 4.17 30.60 0.13 -2.45 16 7 C 0.05 1.72 4.43 86.30 0.38 2.11 16 8 N -0.52 -20.60 5.40 -882.99 -4.76 -25.37 16 9 C 0.04 1.81 5.10 86.65 0.44 2.25 16 10 C -0.11 -5.44 5.50 31.80 0.17 -5.27 16 11 C 0.23 11.86 0.99 -10.66 -0.01 11.85 16 12 O -0.60 -33.70 12.93 -148.98 -1.93 -35.62 16 13 C -0.55 -31.04 8.10 25.60 0.21 -30.83 16 14 H 0.05 3.08 7.34 -2.91 -0.02 3.06 16 15 C 0.03 1.43 5.26 84.65 0.45 1.88 16 16 N -0.92 -50.53 10.88 21.45 0.23 -50.30 16 17 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.06 2.83 6.17 86.45 0.53 3.37 16 22 H 0.05 0.80 6.42 -2.39 -0.02 0.78 16 23 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 0.80 6.42 -2.39 -0.02 0.79 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 0.99 6.54 -2.39 -0.02 0.98 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.05 1.20 6.35 -2.39 -0.02 1.18 16 29 H 0.07 1.09 6.54 -2.39 -0.02 1.07 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 1.74 6.80 -2.39 -0.02 1.72 16 33 H 0.02 0.70 7.49 -2.38 -0.02 0.69 16 34 H 0.08 2.48 6.35 -2.39 -0.02 2.47 16 35 H 0.09 3.18 7.67 -2.38 -0.02 3.16 16 36 H 0.03 1.23 8.00 -2.39 -0.02 1.21 16 37 H 0.05 2.41 8.06 -2.39 -0.02 2.39 16 38 H 0.05 2.60 7.85 -2.39 -0.02 2.58 16 39 H 0.38 21.38 7.05 -74.05 -0.52 20.86 16 40 H 0.27 14.03 8.31 -92.72 -0.77 13.26 16 41 H 0.03 1.34 7.39 -2.38 -0.02 1.32 16 42 H 0.07 3.43 7.39 -2.39 -0.02 3.42 16 Total: -1.00 -61.66 319.38 -0.83 -62.49 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.47 Total: 33.70 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 4.60 Total: -18.26 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -4.53 Total: -75.67 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -3.40 Total: -47.56 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -61.66 -0.83 -62.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.610 kcal (2) G-P(sol) polarization free energy of solvation -61.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds