Wall clock time and date at job start Mon Mar 30 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42910 * 113.99811 * 2 1 4 4 C 1.53004 * 109.46817 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.99138 * 173.90407 * 4 3 2 6 6 C 1.54336 * 109.99030 * 52.86730 * 4 3 2 7 7 C 1.55149 * 103.01966 * 218.66083 * 6 4 3 8 8 H 1.08998 * 111.03714 * 153.39766 * 7 6 4 9 9 O 1.42900 * 111.00777 * 277.23403 * 7 6 4 10 10 C 1.54912 * 101.58276 * 35.30714 * 7 6 4 11 11 N 1.47020 * 109.88388 * 294.99759 * 4 3 2 12 12 C 1.34777 * 125.64991 * 298.40045 * 11 4 3 13 13 O 1.21283 * 119.99750 * 359.71166 * 12 11 4 14 14 C 1.50702 * 119.99928 * 179.97438 * 12 11 4 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 C 1.50697 * 109.47491 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99437 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00278 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00194 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47014 * 89.99669 * 20 18 16 22 22 H 1.48495 * 109.47331 * 209.99910 * 20 18 16 23 23 H 1.48497 * 109.46899 * 330.00049 * 20 18 16 24 24 H 1.09000 * 109.47434 * 299.99723 * 1 2 3 25 25 H 1.09002 * 109.47571 * 59.99997 * 1 2 3 26 26 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46697 * 60.00247 * 3 2 1 28 28 H 1.08997 * 109.46855 * 300.00065 * 3 2 1 29 29 H 1.09001 * 110.84537 * 100.19661 * 6 4 3 30 30 H 1.08993 * 110.51751 * 336.97860 * 6 4 3 31 31 H 0.96697 * 114.00075 * 173.64616 * 9 7 6 32 32 H 1.08993 * 110.36878 * 204.14992 * 10 7 6 33 33 H 1.08999 * 110.36498 * 81.82751 * 10 7 6 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 36 36 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 37 37 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 38 38 H 0.97004 * 120.00291 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9873 2.1707 -0.1094 6 6 3.9918 0.2705 -1.1573 7 6 5.1610 -0.5320 -0.5280 8 1 5.2798 -1.4988 -1.0171 9 8 6.3783 0.2151 -0.5740 10 6 4.6701 -0.7045 0.9311 11 7 3.9883 0.5626 1.2521 12 6 3.8052 1.0645 2.4894 13 8 3.2269 2.1205 2.6360 14 6 4.3242 0.3166 3.6904 15 6 3.9928 1.1005 4.9618 16 6 4.5112 0.3523 6.1628 17 1 5.0253 -0.5885 6.0323 18 6 4.3293 0.8688 7.4281 19 7 3.7038 2.0147 7.5870 20 14 4.9713 -0.0590 8.9169 21 1 6.3611 0.3750 9.2091 22 1 4.1064 0.2274 10.0895 23 1 4.9569 -1.5170 8.6355 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 4.3412 0.8613 -2.0040 30 1 3.1841 -0.3966 -1.4584 31 1 7.1144 -0.2032 -0.1069 32 1 5.5164 -0.8599 1.6002 33 1 3.9723 -1.5389 1.0005 34 1 3.8551 -0.6663 3.7369 35 1 5.4046 0.1999 3.6067 36 1 4.4619 2.0834 4.9153 37 1 2.9123 1.2173 5.0454 38 1 3.5761 2.3783 8.4772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593812105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:03 Heat of formation + Delta-G solvation = -135.280854 kcal Electronic energy + Delta-G solvation = -19917.349361 eV Core-core repulsion = 16759.861031 eV Total energy + Delta-G solvation = -3157.488330 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.14283 -37.84312 -37.46448 -35.11960 -33.45013 -31.70619 -30.39333 -29.84898 -26.75159 -25.81455 -24.99795 -22.77799 -21.54485 -20.32959 -18.64540 -17.60162 -17.06995 -16.25827 -15.93342 -15.84561 -15.50513 -14.78264 -14.46928 -14.38802 -14.27412 -13.82841 -13.31043 -12.89500 -12.58244 -12.27156 -12.03153 -11.91371 -11.87116 -11.33785 -11.29168 -11.03087 -10.91148 -10.85513 -10.57803 -10.24326 -9.92369 -9.69687 -9.58067 -9.11968 -8.91957 -8.33542 -8.26533 -5.94139 -3.98463 3.28126 3.30303 3.34397 3.40517 3.43319 3.78058 4.00105 4.40144 4.48480 4.57112 4.83815 5.09334 5.19052 5.32289 5.34568 5.40597 5.40778 5.47009 5.59553 5.62863 5.63439 5.68025 5.79505 5.87986 6.08806 6.26795 6.28346 6.63427 6.93552 7.14245 7.49280 7.76555 7.89337 7.93291 8.09730 8.41043 8.81208 9.10054 9.64878 11.16900 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.005053 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.212858 B = 5540.424498 C = 6185.054371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.046 3.954 4 C 0.144 3.856 5 H 0.087 0.913 6 C -0.117 4.117 7 C 0.089 3.911 8 H 0.078 0.922 9 O -0.558 6.558 10 C 0.076 3.924 11 N -0.614 5.614 12 C 0.529 3.471 13 O -0.536 6.536 14 C -0.123 4.123 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.381 0.619 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 -7.109 -19.476 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.032 4.032 4 C 0.040 3.960 5 H 0.105 0.895 6 C -0.155 4.155 7 C 0.030 3.970 8 H 0.096 0.904 9 O -0.364 6.364 10 C -0.048 4.048 11 N -0.350 5.350 12 C 0.320 3.680 13 O -0.412 6.412 14 C -0.163 4.163 15 C 0.000 4.000 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.228 0.772 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.873 -6.118 -19.494 20.450 hybrid contribution 0.398 -0.656 1.207 1.430 sum -0.474 -6.774 -18.287 19.507 Atomic orbital electron populations 1.22700 0.81356 1.02419 0.99908 1.87821 1.19352 1.27831 1.95406 1.22961 0.93866 0.85016 1.01325 1.21521 0.91862 0.97921 0.84659 0.89524 1.22695 0.96500 0.99053 0.97263 1.22941 0.85103 0.94525 0.94464 0.90439 1.86507 1.20424 1.51256 1.78243 1.22968 0.97546 0.87833 0.96478 1.48563 1.58415 1.22777 1.05273 1.21262 0.78380 0.85580 0.82745 1.90644 1.42160 1.23158 1.85198 1.21834 1.00782 1.00152 0.93535 1.18900 0.97817 0.95085 0.88204 1.21213 1.37157 1.06690 0.91340 0.92658 1.25020 0.95295 0.95009 0.99037 1.70002 1.41760 1.18589 1.22538 0.86592 0.78753 0.80110 0.82498 1.20667 1.21228 1.19900 0.93968 0.94462 0.89858 0.91255 0.92962 0.89639 0.88236 0.77168 0.90157 0.90467 0.90428 0.90495 0.95844 0.95881 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.39 -5.24 9.46 -35.23 -0.33 -5.58 16 3 C 0.05 0.64 5.59 37.16 0.21 0.84 16 4 C 0.14 2.02 3.26 -66.95 -0.22 1.80 16 5 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 6 C -0.12 -1.23 6.11 -24.89 -0.15 -1.38 16 7 C 0.09 0.87 4.43 -24.59 -0.11 0.76 16 8 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 9 O -0.56 -5.93 13.47 -35.23 -0.47 -6.41 16 10 C 0.08 0.90 6.42 -2.53 -0.02 0.89 16 11 N -0.61 -9.86 3.02 -163.01 -0.49 -10.35 16 12 C 0.53 10.98 7.63 -10.98 -0.08 10.89 16 13 O -0.54 -13.15 14.96 5.55 0.08 -13.06 16 14 C -0.12 -2.64 4.65 -27.88 -0.13 -2.77 16 15 C 0.04 1.04 4.26 -27.89 -0.12 0.92 16 16 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.79 13.29 55.43 0.74 -27.06 16 20 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.19 6.72 -51.93 -0.35 0.84 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.98 6.95 -51.93 -0.36 0.62 16 31 H 0.38 2.57 9.11 45.56 0.42 2.99 16 32 H 0.08 0.89 7.47 -51.93 -0.39 0.50 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.08 1.51 7.84 -51.93 -0.41 1.10 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 316.61 15.07 4.77 4.77 Total: -1.00 -35.89 316.61 -5.93 -41.81 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.28 Total: -0.53 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 0.08 Total: -0.44 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.24 Total: -37.41 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.72 Total: -25.05 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.89 -5.93 -41.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593812105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.466 kcal (2) G-P(sol) polarization free energy of solvation -35.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds