Wall clock time and date at job start Mon Mar 30 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42910 * 113.99811 * 2 1 4 4 C 1.53004 * 109.46817 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.99138 * 173.90407 * 4 3 2 6 6 C 1.54336 * 109.99030 * 52.86730 * 4 3 2 7 7 C 1.55149 * 103.01966 * 218.66083 * 6 4 3 8 8 H 1.08998 * 111.03714 * 153.39766 * 7 6 4 9 9 O 1.42900 * 111.00777 * 277.23403 * 7 6 4 10 10 C 1.54912 * 101.58276 * 35.30714 * 7 6 4 11 11 N 1.47020 * 109.88388 * 294.99759 * 4 3 2 12 12 C 1.34777 * 125.64991 * 298.40045 * 11 4 3 13 13 O 1.21283 * 119.99750 * 359.71166 * 12 11 4 14 14 C 1.50702 * 119.99928 * 179.97438 * 12 11 4 15 15 C 1.52996 * 109.47159 * 179.72352 * 14 12 11 16 16 C 1.50697 * 109.47491 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99437 * 359.97438 * 16 15 14 18 18 C 1.37869 * 120.00278 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00194 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00110 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47014 * 89.99669 * 20 18 16 22 22 H 1.48495 * 109.47331 * 209.99910 * 20 18 16 23 23 H 1.48497 * 109.46899 * 330.00049 * 20 18 16 24 24 H 1.09000 * 109.47434 * 299.99723 * 1 2 3 25 25 H 1.09002 * 109.47571 * 59.99997 * 1 2 3 26 26 H 1.09004 * 109.47457 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46697 * 60.00247 * 3 2 1 28 28 H 1.08997 * 109.46855 * 300.00065 * 3 2 1 29 29 H 1.09001 * 110.84537 * 100.19661 * 6 4 3 30 30 H 1.08993 * 110.51751 * 336.97860 * 6 4 3 31 31 H 0.96697 * 114.00075 * 173.64616 * 9 7 6 32 32 H 1.08993 * 110.36878 * 204.14992 * 10 7 6 33 33 H 1.08999 * 110.36498 * 81.82751 * 10 7 6 34 34 H 1.09004 * 109.46965 * 299.72211 * 14 12 11 35 35 H 1.08994 * 109.46990 * 59.72065 * 14 12 11 36 36 H 1.09004 * 109.47066 * 299.99797 * 15 14 12 37 37 H 1.09000 * 109.47234 * 59.99288 * 15 14 12 38 38 H 0.97004 * 120.00291 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9873 2.1707 -0.1094 6 6 3.9918 0.2705 -1.1573 7 6 5.1610 -0.5320 -0.5280 8 1 5.2798 -1.4988 -1.0171 9 8 6.3783 0.2151 -0.5740 10 6 4.6701 -0.7045 0.9311 11 7 3.9883 0.5626 1.2521 12 6 3.8052 1.0645 2.4894 13 8 3.2269 2.1205 2.6360 14 6 4.3242 0.3166 3.6904 15 6 3.9928 1.1005 4.9618 16 6 4.5112 0.3523 6.1628 17 1 5.0253 -0.5885 6.0323 18 6 4.3293 0.8688 7.4281 19 7 3.7038 2.0147 7.5870 20 14 4.9713 -0.0590 8.9169 21 1 6.3611 0.3750 9.2091 22 1 4.1064 0.2274 10.0895 23 1 4.9569 -1.5170 8.6355 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 4.3412 0.8613 -2.0040 30 1 3.1841 -0.3966 -1.4584 31 1 7.1144 -0.2032 -0.1069 32 1 5.5164 -0.8599 1.6002 33 1 3.9723 -1.5389 1.0005 34 1 3.8551 -0.6663 3.7369 35 1 5.4046 0.1999 3.6067 36 1 4.4619 2.0834 4.9153 37 1 2.9123 1.2173 5.0454 38 1 3.5761 2.3783 8.4772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593812105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:03 Heat of formation + Delta-G solvation = -163.998856 kcal Electronic energy + Delta-G solvation = -19918.594667 eV Core-core repulsion = 16759.861031 eV Total energy + Delta-G solvation = -3158.733636 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.38687 -39.22858 -38.42714 -36.15637 -35.59177 -33.37075 -32.01372 -30.83057 -27.79902 -27.65780 -26.08985 -24.38357 -22.87494 -21.60146 -20.01924 -18.85822 -18.50852 -17.81100 -17.16069 -17.01942 -16.69154 -16.48356 -16.07507 -15.80425 -15.27801 -14.90088 -14.48440 -14.38434 -14.04473 -14.01058 -13.26651 -13.20564 -13.11881 -12.82978 -12.78254 -12.47248 -12.32017 -12.13198 -11.95333 -11.75938 -11.61217 -11.32568 -11.08873 -10.78305 -10.58389 -10.49626 -9.59953 -8.19204 -6.33989 1.41328 1.44712 1.55637 1.68280 2.00525 2.42606 2.76953 3.13656 3.27864 3.45528 3.69324 3.91543 4.01873 4.14618 4.26114 4.39638 4.41858 4.47256 4.49292 4.55234 4.57209 4.71146 4.79329 4.83404 4.88135 4.96394 5.00225 5.21497 5.43070 5.50209 5.59013 5.82350 6.12176 6.15268 6.52354 6.84111 6.92953 7.25237 7.36583 8.93789 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.023942 B = 0.005053 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.212858 B = 5540.424498 C = 6185.054371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.394 6.394 3 C 0.051 3.949 4 C 0.134 3.866 5 H 0.071 0.929 6 C -0.107 4.107 7 C 0.100 3.900 8 H 0.118 0.882 9 O -0.578 6.578 10 C 0.063 3.937 11 N -0.607 5.607 12 C 0.523 3.477 13 O -0.591 6.591 14 C -0.109 4.109 15 C 0.045 3.955 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.007 4.007 19 N -0.939 5.939 20 Si 0.977 3.023 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.254 1.254 24 H 0.023 0.977 25 H 0.059 0.941 26 H 0.104 0.896 27 H 0.026 0.974 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.397 0.603 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.100 0.900 36 H -0.019 1.019 37 H -0.021 1.021 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.099 -10.124 -20.888 23.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.314 6.314 3 C -0.026 4.026 4 C 0.030 3.970 5 H 0.089 0.911 6 C -0.144 4.144 7 C 0.040 3.960 8 H 0.135 0.865 9 O -0.387 6.387 10 C -0.059 4.059 11 N -0.340 5.340 12 C 0.314 3.686 13 O -0.471 6.471 14 C -0.149 4.149 15 C 0.007 3.993 16 C -0.581 4.581 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.800 3.200 21 H -0.196 1.196 22 H -0.211 1.211 23 H -0.178 1.178 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.044 0.956 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.131 0.869 31 H 0.247 0.753 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.119 0.881 36 H -0.001 1.001 37 H -0.002 1.002 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.475 -9.194 -20.963 22.896 hybrid contribution -0.046 0.300 1.570 1.599 sum 0.429 -8.894 -19.394 21.340 Atomic orbital electron populations 1.22880 0.80014 1.03851 1.00102 1.87779 1.20830 1.27309 1.95437 1.22820 0.93997 0.85261 1.00544 1.21752 0.91930 0.98248 0.85051 0.91147 1.22700 0.97272 0.98665 0.95810 1.23010 0.84483 0.95846 0.92618 0.86493 1.86476 1.21235 1.52374 1.78592 1.23396 0.97952 0.85938 0.98631 1.48493 1.57146 1.23988 1.04417 1.21051 0.78292 0.84996 0.84289 1.90621 1.44761 1.25469 1.86284 1.21563 1.02386 0.99767 0.91159 1.18668 0.94545 0.94160 0.91885 1.21682 1.37132 1.07415 0.91839 0.90574 1.26166 0.95276 0.95885 1.03104 1.70189 1.43332 1.20808 1.23567 0.85281 0.78100 0.79293 0.77325 1.19564 1.21133 1.17805 0.95838 0.92226 0.87813 0.95595 0.90204 0.88316 0.86927 0.75251 0.89065 0.89154 0.88478 0.88137 1.00103 1.00222 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.39 -10.26 9.46 -148.98 -1.41 -11.67 16 3 C 0.05 1.43 5.59 71.98 0.40 1.83 16 4 C 0.13 3.66 3.26 45.35 0.15 3.81 16 5 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 6 C -0.11 -1.91 6.11 31.78 0.19 -1.72 16 7 C 0.10 1.57 4.43 31.98 0.14 1.71 16 8 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 9 O -0.58 -10.44 13.47 -148.98 -2.01 -12.45 16 10 C 0.06 1.33 6.42 86.86 0.56 1.88 16 11 N -0.61 -19.19 3.02 -788.03 -2.38 -21.57 16 12 C 0.52 22.44 7.63 87.66 0.67 23.11 16 13 O -0.59 -31.14 14.96 -3.04 -0.05 -31.19 16 14 C -0.11 -4.72 4.65 29.85 0.14 -4.58 16 15 C 0.05 2.62 4.26 29.85 0.13 2.75 16 16 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 17 H 0.08 4.03 7.74 -2.91 -0.02 4.00 16 18 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 19 N -0.94 -60.73 13.29 21.44 0.28 -60.44 16 20 Si 0.98 44.79 29.54 68.60 2.03 46.82 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 24 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.03 0.95 6.72 -2.39 -0.02 0.93 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.77 6.95 -2.39 -0.02 1.75 16 31 H 0.40 4.07 9.11 -74.06 -0.67 3.40 16 32 H 0.09 1.73 7.47 -2.39 -0.02 1.71 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.10 3.79 8.14 -2.38 -0.02 3.77 16 35 H 0.10 3.83 7.84 -2.39 -0.02 3.82 16 36 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 37 H -0.02 -1.36 8.10 -2.39 -0.02 -1.38 16 38 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -82.84 316.61 1.16 -81.68 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: 0.37 Total: 9.60 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 4.32 Total: -0.77 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.10 Total: -82.01 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -3.46 Total: -55.31 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -82.84 1.16 -81.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593812105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.320 kcal (2) G-P(sol) polarization free energy of solvation -82.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds