Wall clock time and date at job start Mon Mar 30 2020 04:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 113.99966 * 2 1 4 4 H 1.09000 * 110.55992 * 27.31859 * 3 2 1 5 5 C 1.54798 * 110.55138 * 264.49002 * 3 2 1 6 6 O 1.44427 * 104.79877 * 217.33352 * 5 3 2 7 7 C 1.44426 * 105.27738 * 40.58499 * 6 5 3 8 8 C 1.54473 * 104.80339 * 319.49061 * 7 6 5 9 9 H 1.09004 * 110.51075 * 265.19376 * 8 7 6 10 10 N 1.46499 * 110.51354 * 142.62242 * 8 7 6 11 11 C 1.34771 * 120.00212 * 88.30368 * 10 8 7 12 12 O 1.21277 * 120.00111 * 0.02562 * 11 10 8 13 13 C 1.50708 * 120.00117 * 179.97438 * 11 10 8 14 14 C 1.52994 * 109.47080 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47119 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.09001 * 109.46961 * 299.99950 * 1 2 3 25 25 H 1.08996 * 109.47489 * 59.99854 * 1 2 3 26 26 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.08998 * 110.31274 * 98.53906 * 5 3 2 28 28 H 1.08997 * 110.53542 * 336.23941 * 5 3 2 29 29 H 1.09000 * 110.37536 * 200.65265 * 7 6 5 30 30 H 1.09005 * 110.46066 * 78.36902 * 7 6 5 31 31 H 0.97005 * 119.99723 * 268.30733 * 10 8 7 32 32 H 1.08998 * 109.46824 * 60.00475 * 13 11 10 33 33 H 1.08994 * 109.46994 * 300.00234 * 13 11 10 34 34 H 1.09004 * 109.46806 * 60.00263 * 14 13 11 35 35 H 1.09000 * 109.47828 * 300.00568 * 14 13 11 36 36 H 1.09004 * 109.47066 * 60.00422 * 15 14 13 37 37 H 1.08994 * 109.47405 * 300.00252 * 15 14 13 38 38 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3375 2.0240 0.4684 5 6 2.3584 1.7454 -1.4428 6 8 3.6000 2.4723 -1.3173 7 6 4.3843 1.7241 -0.3629 8 6 3.3753 1.2904 0.7235 9 1 3.3768 1.9997 1.5511 10 7 3.6866 -0.0580 1.2043 11 6 4.5481 -0.2267 2.2269 12 8 5.0653 0.7378 2.7494 13 6 4.8678 -1.6138 2.7218 14 6 5.8645 -1.5251 3.8792 15 6 6.1896 -2.9333 4.3813 16 6 7.1709 -2.8460 5.5217 17 1 7.5267 -1.8824 5.8553 18 6 7.6096 -3.9959 6.1433 19 7 8.4618 -3.9193 7.1421 20 14 6.9936 -5.6625 5.5666 21 1 7.8968 -6.1856 4.5103 22 1 6.9736 -6.6064 6.7129 23 1 5.6209 -5.5203 5.0185 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.5774 2.3940 -1.8395 28 1 2.4913 0.8756 -2.0861 29 1 5.1596 2.3563 0.0699 30 1 4.8298 0.8499 -0.8377 31 1 3.2726 -0.8294 0.7865 32 1 5.3041 -2.1972 1.9111 33 1 3.9531 -2.0966 3.0657 34 1 5.4286 -0.9414 4.6901 35 1 6.7791 -1.0423 3.5350 36 1 6.6256 -3.5166 3.5702 37 1 5.2752 -3.4165 4.7254 38 1 8.7706 -4.7283 7.5791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594043442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:45 Heat of formation + Delta-G solvation = -134.413290 kcal Electronic energy + Delta-G solvation = -19190.399408 eV Core-core repulsion = 16032.948698 eV Total energy + Delta-G solvation = -3157.450710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57738 -38.98315 -37.51966 -34.60399 -34.17957 -32.08645 -30.53689 -29.10141 -27.90730 -26.94803 -24.01956 -23.17748 -21.40645 -20.47274 -19.83793 -17.58825 -17.50607 -16.63480 -16.35488 -15.92840 -15.70722 -15.61221 -15.06718 -14.73704 -14.42631 -14.12869 -13.52538 -13.31666 -12.72529 -12.66516 -12.44457 -12.03602 -11.95798 -11.86805 -11.63347 -11.39642 -10.95354 -10.76297 -10.35255 -10.05306 -9.98383 -9.82617 -9.67741 -9.42477 -9.11086 -9.06482 -8.49030 -5.98801 -3.96422 2.79367 2.83974 3.33245 3.40187 3.42617 3.43391 3.72844 4.04157 4.35070 4.48988 4.52029 4.76082 4.85916 4.89691 4.94137 5.14311 5.20233 5.26026 5.28527 5.34594 5.55481 5.56964 5.63273 5.64453 6.12668 6.23145 6.32502 6.59066 6.70886 6.72794 6.95228 7.40327 7.48438 7.60359 7.84964 8.40055 8.61442 9.08099 9.63336 11.14954 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.035003 B = 0.003696 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.746339 B = 7573.751349 C = 8059.571979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.048 3.952 4 H 0.087 0.913 5 C 0.025 3.975 6 O -0.366 6.366 7 C 0.034 3.966 8 C 0.116 3.884 9 H 0.108 0.892 10 N -0.720 5.720 11 C 0.513 3.487 12 O -0.536 6.536 13 C -0.140 4.140 14 C -0.087 4.087 15 C -0.015 4.015 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.881 3.119 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.409 0.591 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.011 0.989 37 H 0.015 0.985 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.923 8.479 -18.962 27.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.011 4.011 4 H 0.105 0.895 5 C -0.053 4.053 6 O -0.284 6.284 7 C -0.044 4.044 8 C 0.009 3.991 9 H 0.126 0.874 10 N -0.376 5.376 11 C 0.301 3.699 12 O -0.412 6.412 13 C -0.180 4.180 14 C -0.125 4.125 15 C -0.052 4.052 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.087 0.913 31 H 0.246 0.754 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.033 0.967 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.277 9.099 -18.555 26.936 hybrid contribution -0.779 -1.273 -0.345 1.532 sum -18.056 7.826 -18.900 27.285 Atomic orbital electron populations 1.22867 0.80059 1.03359 1.00227 1.87780 1.20466 1.26266 1.94814 1.23863 0.95107 0.86020 0.96150 0.89474 1.23975 0.87732 0.97385 0.96200 1.89193 1.27950 1.48261 1.63034 1.23962 0.94617 0.97146 0.88689 1.22338 0.92153 0.87290 0.97337 0.87397 1.45881 1.47332 1.07965 1.36378 1.21259 0.77531 0.92736 0.78339 1.90691 1.51092 1.42497 1.56939 1.21856 1.02484 0.92352 1.01289 1.21267 0.96880 0.99666 0.94718 1.19610 0.96748 0.92446 0.96411 1.21174 1.24660 0.94974 1.14825 0.90940 1.25058 0.94734 0.99174 0.94715 1.69925 1.32598 1.28664 1.23237 0.86757 0.79926 0.84123 0.78314 1.20343 1.21470 1.19040 0.93602 0.93804 0.89077 0.88629 0.90920 0.87811 0.91276 0.75407 0.89313 0.89295 0.92097 0.92087 0.97075 0.96665 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.26 16 2 O -0.38 -3.03 8.62 -35.23 -0.30 -3.33 16 3 C 0.05 0.39 3.63 -24.99 -0.09 0.30 16 4 H 0.09 0.59 7.82 -51.93 -0.41 0.19 16 5 C 0.02 0.19 7.39 38.10 0.28 0.47 16 6 O -0.37 -3.92 11.65 -35.23 -0.41 -4.33 16 7 C 0.03 0.36 7.35 37.93 0.28 0.64 16 8 C 0.12 1.24 3.44 -66.37 -0.23 1.01 16 9 H 0.11 1.29 7.61 -51.93 -0.40 0.90 16 10 N -0.72 -8.44 4.90 -52.29 -0.26 -8.70 16 11 C 0.51 7.93 7.83 -10.98 -0.09 7.85 16 12 O -0.54 -10.35 15.66 5.56 0.09 -10.26 16 13 C -0.14 -2.18 5.70 -27.88 -0.16 -2.34 16 14 C -0.09 -1.82 4.44 -26.74 -0.12 -1.94 16 15 C -0.01 -0.36 4.04 -27.88 -0.11 -0.47 16 16 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 17 H 0.07 2.32 7.99 -52.49 -0.42 1.90 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.90 -28.54 13.96 55.43 0.77 -27.77 16 20 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 24 H 0.05 0.23 8.11 -51.93 -0.42 -0.19 16 25 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.41 4.11 7.24 -40.82 -0.30 3.82 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.06 1.34 8.10 -51.93 -0.42 0.92 16 36 H 0.01 0.26 7.58 -51.93 -0.39 -0.14 16 37 H 0.02 0.36 7.19 -51.93 -0.37 -0.02 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -34.32 315.86 -5.68 -39.99 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.09 Total: -0.59 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 0.43 Total: -6.99 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.52 Total: -36.47 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.63 Total: -17.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.32 -5.68 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594043442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.419 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds