Wall clock time and date at job start Mon Mar 30 2020 04:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42908 * 113.99966 * 2 1 4 4 H 1.09000 * 110.55992 * 27.31859 * 3 2 1 5 5 C 1.54798 * 110.55138 * 264.49002 * 3 2 1 6 6 O 1.44427 * 104.79877 * 217.33352 * 5 3 2 7 7 C 1.44426 * 105.27738 * 40.58499 * 6 5 3 8 8 C 1.54473 * 104.80339 * 319.49061 * 7 6 5 9 9 H 1.09004 * 110.51075 * 265.19376 * 8 7 6 10 10 N 1.46499 * 110.51354 * 142.62242 * 8 7 6 11 11 C 1.34771 * 120.00212 * 88.30368 * 10 8 7 12 12 O 1.21277 * 120.00111 * 0.02562 * 11 10 8 13 13 C 1.50708 * 120.00117 * 179.97438 * 11 10 8 14 14 C 1.52994 * 109.47080 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47119 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.09001 * 109.46961 * 299.99950 * 1 2 3 25 25 H 1.08996 * 109.47489 * 59.99854 * 1 2 3 26 26 H 1.08999 * 109.47227 * 180.02562 * 1 2 3 27 27 H 1.08998 * 110.31274 * 98.53906 * 5 3 2 28 28 H 1.08997 * 110.53542 * 336.23941 * 5 3 2 29 29 H 1.09000 * 110.37536 * 200.65265 * 7 6 5 30 30 H 1.09005 * 110.46066 * 78.36902 * 7 6 5 31 31 H 0.97005 * 119.99723 * 268.30733 * 10 8 7 32 32 H 1.08998 * 109.46824 * 60.00475 * 13 11 10 33 33 H 1.08994 * 109.46994 * 300.00234 * 13 11 10 34 34 H 1.09004 * 109.46806 * 60.00263 * 14 13 11 35 35 H 1.09000 * 109.47828 * 300.00568 * 14 13 11 36 36 H 1.09004 * 109.47066 * 60.00422 * 15 14 13 37 37 H 1.08994 * 109.47405 * 300.00252 * 15 14 13 38 38 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3375 2.0240 0.4684 5 6 2.3584 1.7454 -1.4428 6 8 3.6000 2.4723 -1.3173 7 6 4.3843 1.7241 -0.3629 8 6 3.3753 1.2904 0.7235 9 1 3.3768 1.9997 1.5511 10 7 3.6866 -0.0580 1.2043 11 6 4.5481 -0.2267 2.2269 12 8 5.0653 0.7378 2.7494 13 6 4.8678 -1.6138 2.7218 14 6 5.8645 -1.5251 3.8792 15 6 6.1896 -2.9333 4.3813 16 6 7.1709 -2.8460 5.5217 17 1 7.5267 -1.8824 5.8553 18 6 7.6096 -3.9959 6.1433 19 7 8.4618 -3.9193 7.1421 20 14 6.9936 -5.6625 5.5666 21 1 7.8968 -6.1856 4.5103 22 1 6.9736 -6.6064 6.7129 23 1 5.6209 -5.5203 5.0185 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.5774 2.3940 -1.8395 28 1 2.4913 0.8756 -2.0861 29 1 5.1596 2.3563 0.0699 30 1 4.8298 0.8499 -0.8377 31 1 3.2726 -0.8294 0.7865 32 1 5.3041 -2.1972 1.9111 33 1 3.9531 -2.0966 3.0657 34 1 5.4286 -0.9414 4.6901 35 1 6.7791 -1.0423 3.5350 36 1 6.6256 -3.5166 3.5702 37 1 5.2752 -3.4165 4.7254 38 1 8.7706 -4.7283 7.5791 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594043442.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:45 Heat of formation + Delta-G solvation = -160.980789 kcal Electronic energy + Delta-G solvation = -19191.551461 eV Core-core repulsion = 16032.948698 eV Total energy + Delta-G solvation = -3158.602763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45508 -40.07184 -38.13530 -36.19135 -35.47737 -34.12407 -31.51735 -30.20058 -29.25099 -27.38147 -25.70038 -24.04440 -22.53255 -21.73220 -21.29862 -18.99805 -18.35415 -18.25960 -17.25794 -16.89057 -16.62500 -16.40488 -16.23596 -16.06025 -15.47645 -15.06124 -14.94579 -14.77432 -14.45071 -13.85324 -13.44882 -13.23581 -13.16316 -12.70965 -12.61996 -12.53988 -12.46949 -12.08193 -11.77921 -11.72020 -11.48167 -11.31486 -11.05885 -10.83467 -10.73913 -10.65032 -10.09214 -8.26728 -6.32260 1.39538 1.43008 1.55154 1.63173 1.95989 2.40206 2.65977 3.00736 3.08442 3.34600 3.63937 3.87276 3.89026 4.08485 4.14779 4.20432 4.27849 4.47353 4.57352 4.66241 4.68116 4.71716 4.72433 4.83866 4.92085 4.93532 4.98513 5.06008 5.31301 5.56849 5.59569 5.61870 5.69395 6.10898 6.32005 6.57916 6.76592 7.27727 7.32198 8.91014 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.035003 B = 0.003696 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.746339 B = 7573.751349 C = 8059.571979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.388 6.388 3 C 0.058 3.942 4 H 0.102 0.898 5 C 0.024 3.976 6 O -0.382 6.382 7 C 0.037 3.963 8 C 0.108 3.892 9 H 0.091 0.909 10 N -0.699 5.699 11 C 0.514 3.486 12 O -0.585 6.585 13 C -0.130 4.130 14 C -0.081 4.081 15 C -0.010 4.010 16 C -0.540 4.540 17 H 0.019 0.981 18 C -0.004 4.004 19 N -0.958 5.958 20 Si 0.962 3.038 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.236 1.236 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.421 0.579 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.036 0.964 35 H 0.037 0.963 36 H 0.029 0.971 37 H 0.030 0.970 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.670 6.648 -21.500 30.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.307 6.307 3 C -0.002 4.002 4 H 0.120 0.880 5 C -0.053 4.053 6 O -0.300 6.300 7 C -0.041 4.041 8 C 0.002 3.998 9 H 0.109 0.891 10 N -0.354 5.354 11 C 0.303 3.697 12 O -0.464 6.464 13 C -0.169 4.169 14 C -0.119 4.119 15 C -0.047 4.047 16 C -0.578 4.578 17 H 0.038 0.962 18 C -0.200 4.200 19 N -0.598 5.598 20 Si 0.784 3.216 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.159 1.159 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.119 0.881 27 H 0.138 0.862 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.090 0.910 31 H 0.260 0.740 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.073 7.273 -21.144 30.048 hybrid contribution 0.085 -0.601 0.471 0.768 sum -19.988 6.673 -20.673 29.520 Atomic orbital electron populations 1.23053 0.78538 1.04342 1.01128 1.87745 1.22077 1.25964 1.94880 1.23771 0.93753 0.86701 0.95936 0.87988 1.24159 0.87105 0.97936 0.96073 1.89179 1.29156 1.48887 1.62820 1.23835 0.94502 0.96972 0.88787 1.22418 0.94186 0.86135 0.97070 0.89059 1.45639 1.45781 1.09067 1.34896 1.21212 0.77652 0.92089 0.78764 1.90687 1.53167 1.43800 1.58784 1.21706 1.02168 0.93099 0.99961 1.21045 0.97413 0.97295 0.96140 1.19552 0.95745 0.94558 0.94849 1.21570 1.26149 0.93127 1.16927 0.96226 1.26205 0.94697 1.04508 0.94557 1.70108 1.34390 1.30320 1.25028 0.85492 0.80831 0.77166 0.78109 1.18908 1.21222 1.15859 0.93403 0.92227 0.88123 0.86223 0.90443 0.89103 0.91036 0.73957 0.86468 0.86601 0.94493 0.94410 0.95230 0.95141 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.85 113.37 1.23 1.42 16 2 O -0.39 -5.07 8.62 -148.98 -1.28 -6.35 16 3 C 0.06 0.79 3.63 31.72 0.12 0.91 16 4 H 0.10 1.11 7.82 -2.39 -0.02 1.10 16 5 C 0.02 0.31 7.39 72.60 0.54 0.85 16 6 O -0.38 -7.64 11.65 -148.98 -1.74 -9.38 16 7 C 0.04 0.77 7.35 72.48 0.53 1.31 16 8 C 0.11 2.21 3.44 46.00 0.16 2.36 16 9 H 0.09 2.20 7.61 -2.39 -0.02 2.18 16 10 N -0.70 -15.10 4.90 -437.74 -2.15 -17.24 16 11 C 0.51 15.38 7.83 87.66 0.69 16.07 16 12 O -0.58 -23.08 15.66 -3.02 -0.05 -23.12 16 13 C -0.13 -3.74 5.70 29.85 0.17 -3.57 16 14 C -0.08 -3.38 4.44 30.59 0.14 -3.24 16 15 C -0.01 -0.46 4.04 29.85 0.12 -0.33 16 16 C -0.54 -32.64 9.66 25.60 0.25 -32.39 16 17 H 0.02 1.33 7.99 -2.91 -0.02 1.31 16 18 C 0.00 -0.23 5.47 84.66 0.46 0.23 16 19 N -0.96 -62.17 13.96 21.45 0.30 -61.87 16 20 Si 0.96 44.08 27.47 68.60 1.88 45.97 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.24 -9.61 6.54 99.48 0.65 -8.96 16 24 H 0.05 0.35 8.11 -2.39 -0.02 0.33 16 25 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 29 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 1.44 8.06 -2.38 -0.02 1.42 16 31 H 0.42 7.18 7.24 -92.70 -0.67 6.51 16 32 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 35 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.03 1.29 7.58 -2.38 -0.02 1.27 16 37 H 0.03 1.34 7.19 -2.39 -0.02 1.33 16 38 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -77.79 315.86 1.68 -76.11 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.31 Total: 12.27 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.40 Total: -16.39 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.85 Total: -79.11 kcal Atomic # 8 Polarization: -35.78 SS G_CDS: -3.07 Total: -38.85 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Total: -77.79 1.68 -76.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594043442.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.870 kcal (2) G-P(sol) polarization free energy of solvation -77.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds