Wall clock time and date at job start Mon Mar 30 2020 04:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99824 * 2 1 4 4 H 1.48502 * 109.46770 * 269.99859 * 3 2 1 5 5 H 1.48505 * 109.47180 * 29.99515 * 3 2 1 6 6 H 1.48495 * 109.46962 * 149.99911 * 3 2 1 7 7 C 1.37874 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00504 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99816 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99805 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47032 * 180.02562 * 11 10 9 13 13 N 1.46891 * 109.46948 * 64.99678 * 12 11 10 14 14 C 1.46907 * 110.99657 * 185.21798 * 13 12 11 15 15 C 1.52999 * 110.05438 * 301.99507 * 14 13 12 16 16 C 1.53001 * 109.47416 * 305.00736 * 15 14 13 17 17 O 1.42898 * 109.47186 * 175.97082 * 16 15 14 18 18 C 1.53870 * 110.03225 * 63.41291 * 14 13 12 19 19 C 1.54270 * 106.60093 * 119.28412 * 18 14 13 20 20 C 1.54896 * 104.19307 * 336.39155 * 19 18 14 21 21 C 1.54267 * 110.03109 * 180.58128 * 14 13 12 22 22 H 0.97000 * 120.00669 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46963 * 59.99584 * 9 7 2 24 24 H 1.09002 * 109.46928 * 300.00152 * 9 7 2 25 25 H 1.09000 * 109.47362 * 59.99875 * 11 10 9 26 26 H 1.08998 * 109.46921 * 299.99435 * 11 10 9 27 27 H 1.08995 * 109.46728 * 304.99489 * 12 11 10 28 28 H 1.08993 * 109.47020 * 185.00063 * 12 11 10 29 29 H 1.00895 * 111.00577 * 309.17140 * 13 12 11 30 30 H 1.08994 * 109.46958 * 65.00890 * 15 14 13 31 31 H 1.09005 * 109.47111 * 185.00855 * 15 14 13 32 32 H 1.09000 * 109.47348 * 295.97174 * 16 15 14 33 33 H 1.09005 * 109.46785 * 55.96511 * 16 15 14 34 34 H 0.96696 * 113.99652 * 180.02562 * 17 16 15 35 35 H 1.09001 * 110.03332 * 0.02562 * 18 14 13 36 36 H 1.08997 * 110.03267 * 238.56646 * 18 14 13 37 37 H 1.08997 * 110.48679 * 95.06263 * 19 18 14 38 38 H 1.08995 * 110.48866 * 217.71556 * 19 18 14 39 39 H 1.09002 * 110.75485 * 156.25601 * 20 19 18 40 40 H 1.08999 * 110.75432 * 279.62536 * 20 19 18 41 41 H 1.09001 * 110.48783 * 145.64663 * 21 14 13 42 42 H 1.09000 * 110.48967 * 22.99893 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.5652 -4.8754 0.0013 12 6 2.6482 -5.9562 0.0033 13 7 3.4064 -5.8872 1.2595 14 6 4.5342 -6.8285 1.2461 15 6 4.0255 -8.2536 1.0198 16 6 2.9707 -8.5923 2.0751 17 8 2.4282 -9.8870 1.8079 18 6 5.5300 -6.4421 0.1385 19 6 6.8717 -6.1405 0.8376 20 6 6.4698 -5.7697 2.2868 21 6 5.3054 -6.7482 2.5797 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8903 25 1 0.9460 -4.9826 -0.8894 26 1 0.9442 -4.9823 0.8906 27 1 3.3229 -5.7959 -0.8376 28 1 2.1824 -6.9374 -0.0867 29 1 3.7229 -4.9463 1.4398 30 1 3.5827 -8.3279 0.0266 31 1 4.8574 -8.9534 1.0999 32 1 3.4309 -8.5880 3.0632 33 1 2.1730 -7.8502 2.0426 34 1 1.7513 -10.1676 2.4388 35 1 5.1767 -5.5560 -0.3888 36 1 5.6509 -7.2699 -0.5603 37 1 7.5111 -7.0233 0.8332 38 1 7.3736 -5.3022 0.3546 39 1 7.2993 -5.9398 2.9732 40 1 6.1284 -4.7359 2.3405 41 1 5.6919 -7.7291 2.8565 42 1 4.6644 -6.3534 3.3679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595509900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:02 Heat of formation + Delta-G solvation = -119.594589 kcal Electronic energy + Delta-G solvation = -19967.373742 eV Core-core repulsion = 16946.398713 eV Total energy + Delta-G solvation = -3020.975028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.68377 -36.83607 -36.64304 -34.10808 -32.68069 -31.24182 -28.80288 -28.49083 -26.87635 -25.52355 -22.65490 -22.32182 -21.49168 -20.52393 -18.94718 -17.28238 -16.51419 -16.10292 -15.83862 -15.43438 -15.02628 -14.82699 -14.37721 -13.93045 -13.88197 -13.62759 -13.46430 -12.92799 -12.40846 -12.08359 -11.86095 -11.65533 -11.43777 -11.17029 -11.04883 -11.00648 -10.88701 -10.84188 -10.70159 -10.58958 -10.47319 -10.38164 -10.00198 -9.88683 -9.11642 -8.83363 -8.18102 -8.15754 -6.11772 -4.13690 3.29172 3.34320 3.39262 4.07732 4.33754 4.36872 4.58230 4.61765 4.92059 4.95275 5.10766 5.24759 5.25995 5.36164 5.43602 5.49760 5.54079 5.61055 5.65131 5.71885 5.76869 5.86096 5.89526 5.97226 6.01595 6.06319 6.09940 6.19555 6.22091 6.31603 6.36933 6.41033 7.10657 7.29961 7.43124 7.58804 7.69497 7.77890 8.14420 8.56715 8.99381 9.51277 10.99724 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.004543 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.664291 B = 6161.598450 C = 6987.851340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.065 0.935 9 C 0.198 3.802 10 O -0.399 6.399 11 C 0.061 3.939 12 C 0.060 3.940 13 N -0.674 5.674 14 C 0.115 3.885 15 C -0.101 4.101 16 C 0.078 3.922 17 O -0.584 6.584 18 C -0.154 4.154 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.114 4.114 22 H 0.264 0.736 23 H 0.003 0.997 24 H 0.006 0.994 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.358 0.642 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.376 0.624 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.020 -16.357 4.208 19.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.553 4.553 8 H 0.083 0.917 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.017 4.017 12 C -0.069 4.069 13 N -0.307 5.307 14 C 0.023 3.977 15 C -0.139 4.139 16 C 0.001 3.999 17 O -0.390 6.390 18 C -0.194 4.194 19 C -0.159 4.159 20 C -0.166 4.166 21 C -0.152 4.152 22 H 0.073 0.927 23 H 0.021 0.979 24 H 0.023 0.977 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.178 0.822 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.223 0.777 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.051 -16.583 4.043 19.320 hybrid contribution 0.200 1.347 -0.247 1.384 sum 9.251 -15.236 3.796 18.224 Atomic orbital electron populations 1.69961 1.06106 1.27151 1.50518 1.24940 0.94954 0.99403 0.95148 0.86352 0.79671 0.82349 0.78209 1.20502 1.21061 1.19647 1.21043 0.93965 0.89411 1.50856 0.91664 1.20166 0.88693 0.83462 0.95349 1.87783 1.35772 1.13128 1.95222 1.22312 0.94639 0.85306 0.99451 1.22034 0.95781 0.97934 0.91173 1.60726 1.23896 1.11939 1.34144 1.21510 0.89692 0.92035 0.94468 1.21588 0.98086 0.94833 0.99411 1.22189 0.96726 0.83689 0.97285 1.86424 1.59663 1.35721 1.57149 1.22963 0.95950 1.01901 0.98560 1.22302 0.96868 1.00854 0.95914 1.22540 0.97922 0.99903 0.96248 1.22473 0.96505 0.99467 0.96756 0.92653 0.97869 0.97662 0.94236 0.93713 0.94373 0.90553 0.82170 0.91414 0.91492 0.94049 0.91714 0.77733 0.90777 0.91809 0.91989 0.91795 0.91744 0.91039 0.91354 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 7 C -0.51 -15.07 9.43 -34.44 -0.32 -15.39 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 C 0.20 5.41 5.69 36.01 0.20 5.61 16 10 O -0.40 -9.40 9.77 -35.23 -0.34 -9.74 16 11 C 0.06 1.13 6.26 37.16 0.23 1.36 16 12 C 0.06 0.90 5.12 -3.83 -0.02 0.88 16 13 N -0.67 -9.54 5.07 -98.84 -0.50 -10.04 16 14 C 0.11 1.35 0.52 -130.48 -0.07 1.28 16 15 C -0.10 -1.16 3.73 -26.73 -0.10 -1.26 16 16 C 0.08 0.88 6.58 37.16 0.24 1.12 16 17 O -0.58 -6.54 13.66 -35.23 -0.48 -7.02 16 18 C -0.15 -1.83 5.52 -25.61 -0.14 -1.97 16 19 C -0.12 -1.28 6.83 -25.07 -0.17 -1.46 16 20 C -0.13 -1.35 6.91 -24.73 -0.17 -1.52 16 21 C -0.11 -1.22 5.20 -25.07 -0.13 -1.35 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 23 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.59 6.42 -51.93 -0.33 0.26 16 28 H 0.08 1.04 6.39 -51.93 -0.33 0.71 16 29 H 0.36 5.80 8.17 -39.29 -0.32 5.48 16 30 H 0.07 0.83 6.84 -51.93 -0.35 0.48 16 31 H 0.07 0.73 8.04 -51.93 -0.42 0.31 16 32 H 0.04 0.43 7.59 -51.93 -0.39 0.03 16 33 H 0.06 0.80 6.95 -51.93 -0.36 0.43 16 34 H 0.38 2.56 9.12 45.56 0.42 2.98 16 35 H 0.07 1.03 6.66 -51.93 -0.35 0.68 16 36 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.66 7.78 -51.93 -0.40 0.25 16 42 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 LS Contribution 330.80 15.07 4.99 4.99 Total: -1.00 -31.07 330.80 -7.76 -38.83 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.59 Total: 3.55 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.54 Total: -11.15 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.24 Total: -36.21 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.83 Total: -16.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.07 -7.76 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595509900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.767 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds