Wall clock time and date at job start Mon Mar 30 2020 04:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99824 * 2 1 4 4 H 1.48502 * 109.46770 * 269.99859 * 3 2 1 5 5 H 1.48505 * 109.47180 * 29.99515 * 3 2 1 6 6 H 1.48495 * 109.46962 * 149.99911 * 3 2 1 7 7 C 1.37874 * 120.00361 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00504 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99816 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.42900 * 113.99805 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47032 * 180.02562 * 11 10 9 13 13 N 1.46891 * 109.46948 * 64.99678 * 12 11 10 14 14 C 1.46907 * 110.99657 * 185.21798 * 13 12 11 15 15 C 1.52999 * 110.05438 * 301.99507 * 14 13 12 16 16 C 1.53001 * 109.47416 * 305.00736 * 15 14 13 17 17 O 1.42898 * 109.47186 * 175.97082 * 16 15 14 18 18 C 1.53870 * 110.03225 * 63.41291 * 14 13 12 19 19 C 1.54270 * 106.60093 * 119.28412 * 18 14 13 20 20 C 1.54896 * 104.19307 * 336.39155 * 19 18 14 21 21 C 1.54267 * 110.03109 * 180.58128 * 14 13 12 22 22 H 0.97000 * 120.00669 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46963 * 59.99584 * 9 7 2 24 24 H 1.09002 * 109.46928 * 300.00152 * 9 7 2 25 25 H 1.09000 * 109.47362 * 59.99875 * 11 10 9 26 26 H 1.08998 * 109.46921 * 299.99435 * 11 10 9 27 27 H 1.08995 * 109.46728 * 304.99489 * 12 11 10 28 28 H 1.08993 * 109.47020 * 185.00063 * 12 11 10 29 29 H 1.00895 * 111.00577 * 309.17140 * 13 12 11 30 30 H 1.08994 * 109.46958 * 65.00890 * 15 14 13 31 31 H 1.09005 * 109.47111 * 185.00855 * 15 14 13 32 32 H 1.09000 * 109.47348 * 295.97174 * 16 15 14 33 33 H 1.09005 * 109.46785 * 55.96511 * 16 15 14 34 34 H 0.96696 * 113.99652 * 180.02562 * 17 16 15 35 35 H 1.09001 * 110.03332 * 0.02562 * 18 14 13 36 36 H 1.08997 * 110.03267 * 238.56646 * 18 14 13 37 37 H 1.08997 * 110.48679 * 95.06263 * 19 18 14 38 38 H 1.08995 * 110.48866 * 217.71556 * 19 18 14 39 39 H 1.09002 * 110.75485 * 156.25601 * 20 19 18 40 40 H 1.08999 * 110.75432 * 279.62536 * 20 19 18 41 41 H 1.09001 * 110.48783 * 145.64663 * 21 14 13 42 42 H 1.09000 * 110.48967 * 22.99893 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.5652 -4.8754 0.0013 12 6 2.6482 -5.9562 0.0033 13 7 3.4064 -5.8872 1.2595 14 6 4.5342 -6.8285 1.2461 15 6 4.0255 -8.2536 1.0198 16 6 2.9707 -8.5923 2.0751 17 8 2.4282 -9.8870 1.8079 18 6 5.5300 -6.4421 0.1385 19 6 6.8717 -6.1405 0.8376 20 6 6.4698 -5.7697 2.2868 21 6 5.3054 -6.7482 2.5797 22 1 -0.4851 0.8400 -0.0004 23 1 0.6248 -2.5570 -0.8896 24 1 0.6241 -2.5566 0.8903 25 1 0.9460 -4.9826 -0.8894 26 1 0.9442 -4.9823 0.8906 27 1 3.3229 -5.7959 -0.8376 28 1 2.1824 -6.9374 -0.0867 29 1 3.7229 -4.9463 1.4398 30 1 3.5827 -8.3279 0.0266 31 1 4.8574 -8.9534 1.0999 32 1 3.4309 -8.5880 3.0632 33 1 2.1730 -7.8502 2.0426 34 1 1.7513 -10.1676 2.4388 35 1 5.1767 -5.5560 -0.3888 36 1 5.6509 -7.2699 -0.5603 37 1 7.5111 -7.0233 0.8332 38 1 7.3736 -5.3022 0.3546 39 1 7.2993 -5.9398 2.9732 40 1 6.1284 -4.7359 2.3405 41 1 5.6919 -7.7291 2.8565 42 1 4.6644 -6.3534 3.3679 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595509900.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:02 Heat of formation + Delta-G solvation = -142.398400 kcal Electronic energy + Delta-G solvation = -19968.362589 eV Core-core repulsion = 16946.398713 eV Total energy + Delta-G solvation = -3021.963876 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.67765 -38.59904 -37.51404 -35.43821 -34.69750 -32.32450 -30.04015 -29.69983 -28.67644 -26.62697 -24.53590 -23.56859 -22.78024 -21.43770 -19.93150 -18.65727 -18.15004 -17.52854 -17.10879 -16.83485 -16.45225 -16.22184 -15.84180 -15.21635 -15.15851 -14.68439 -14.47791 -14.45575 -13.72725 -13.48870 -13.32323 -13.01194 -12.83211 -12.72201 -12.48934 -12.35816 -12.10208 -12.00223 -11.91188 -11.78811 -11.64412 -11.43306 -11.38184 -11.25877 -10.87903 -10.74842 -10.24420 -9.30014 -8.32720 -6.45252 1.39548 1.42201 1.54222 2.33863 3.01345 3.12177 3.20041 3.37174 3.69780 3.72080 4.04541 4.19512 4.22399 4.30504 4.39931 4.47856 4.54902 4.56252 4.62758 4.69392 4.74539 4.80055 4.82954 4.85662 4.94879 4.97168 5.05184 5.14016 5.16058 5.18661 5.24616 5.29456 5.39564 5.47853 5.53911 5.94866 6.19039 6.43551 6.51943 6.80388 6.94036 7.26767 8.79657 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.004543 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.664291 B = 6161.598450 C = 6987.851340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.212 3.788 10 O -0.406 6.406 11 C 0.054 3.946 12 C 0.074 3.926 13 N -0.675 5.675 14 C 0.115 3.885 15 C -0.098 4.098 16 C 0.083 3.917 17 O -0.598 6.598 18 C -0.154 4.154 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.109 4.109 22 H 0.271 0.729 23 H -0.017 1.017 24 H -0.015 1.015 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.034 0.966 28 H 0.096 0.904 29 H 0.344 0.656 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.394 0.606 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.086 0.914 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.464 -16.856 4.684 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.080 0.920 9 C 0.137 3.863 10 O -0.326 6.326 11 C -0.023 4.023 12 C -0.056 4.056 13 N -0.307 5.307 14 C 0.024 3.976 15 C -0.136 4.136 16 C 0.005 3.995 17 O -0.407 6.407 18 C -0.193 4.193 19 C -0.156 4.156 20 C -0.165 4.165 21 C -0.147 4.147 22 H 0.079 0.921 23 H 0.001 0.999 24 H 0.003 0.997 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.163 0.837 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.244 0.756 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.487 -17.122 4.526 20.582 hybrid contribution -0.301 1.393 -0.390 1.477 sum 10.186 -15.729 4.136 19.191 Atomic orbital electron populations 1.70070 1.07800 1.28644 1.50511 1.25950 0.95919 1.03369 0.93906 0.85191 0.78409 0.77073 0.78783 1.19387 1.19944 1.18788 1.21369 0.94060 0.90778 1.52219 0.91978 1.19784 0.88565 0.84637 0.93326 1.87753 1.35436 1.14246 1.95192 1.22595 0.96097 0.83946 0.99630 1.21912 0.94850 0.97181 0.91613 1.60767 1.25044 1.11503 1.33385 1.21595 0.88989 0.91651 0.95336 1.21565 0.98565 0.94500 0.99009 1.22097 0.96234 0.83471 0.97682 1.86377 1.60513 1.35469 1.58293 1.22926 0.96700 1.01031 0.98653 1.22306 0.96270 1.01501 0.95567 1.22532 0.98462 0.98834 0.96717 1.22459 0.96194 1.00390 0.95665 0.92055 0.99910 0.99706 0.93765 0.93771 0.94814 0.88589 0.83698 0.92351 0.90357 0.92942 0.93131 0.75638 0.93324 0.90966 0.90148 0.92220 0.89935 0.92873 0.89523 0.91119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.98 44.38 29.54 68.60 2.03 46.41 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -32.61 9.43 25.60 0.24 -32.37 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.01 5.69 71.24 0.41 12.42 16 10 O -0.41 -19.70 9.77 -148.98 -1.46 -21.16 16 11 C 0.05 2.06 6.26 71.98 0.45 2.51 16 12 C 0.07 2.20 5.12 86.31 0.44 2.65 16 13 N -0.68 -19.04 5.07 -466.62 -2.37 -21.40 16 14 C 0.12 2.59 0.52 4.25 0.00 2.59 16 15 C -0.10 -2.08 3.73 30.59 0.11 -1.96 16 16 C 0.08 1.71 6.58 71.98 0.47 2.18 16 17 O -0.60 -12.22 13.66 -148.98 -2.04 -14.26 16 18 C -0.15 -3.50 5.52 31.32 0.17 -3.33 16 19 C -0.12 -2.32 6.83 31.67 0.22 -2.10 16 20 C -0.13 -2.50 6.91 31.89 0.22 -2.28 16 21 C -0.11 -2.13 5.20 31.67 0.16 -1.97 16 22 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 23 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 24 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 26 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.03 1.05 6.42 -2.39 -0.02 1.04 16 28 H 0.10 2.53 6.39 -2.39 -0.02 2.52 16 29 H 0.34 11.38 8.17 -89.70 -0.73 10.64 16 30 H 0.06 1.34 6.84 -2.39 -0.02 1.32 16 31 H 0.08 1.50 8.04 -2.38 -0.02 1.48 16 32 H 0.05 0.97 7.59 -2.39 -0.02 0.95 16 33 H 0.05 1.18 6.95 -2.38 -0.02 1.17 16 34 H 0.39 4.62 9.12 -74.06 -0.68 3.95 16 35 H 0.05 1.36 6.66 -2.39 -0.02 1.34 16 36 H 0.07 1.50 7.67 -2.39 -0.02 1.48 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.40 7.78 -2.39 -0.02 1.38 16 42 H 0.07 1.49 8.04 -2.39 -0.02 1.48 16 Total: -1.00 -66.41 330.80 -0.59 -67.00 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.41 Total: 20.18 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 3.37 Total: -20.80 kcal Atomic # 7 Polarization: -75.30 SS G_CDS: -2.08 Total: -77.38 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -3.49 Total: -35.41 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -66.41 -0.59 -67.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595509900.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.398 kcal (2) G-P(sol) polarization free energy of solvation -66.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds