Wall clock time and date at job start Mon Mar 30 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47108 * 2 1 4 4 H 1.08999 * 109.47076 * 179.82134 * 3 2 1 5 5 C 1.50696 * 109.47053 * 299.82303 * 3 2 1 6 6 H 1.08001 * 120.00434 * 120.00342 * 5 3 2 7 7 C 1.37883 * 120.00057 * 299.99579 * 5 3 2 8 8 N 1.31518 * 119.99701 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99918 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47122 * 60.00607 * 9 7 5 11 11 H 1.48501 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47291 * 300.00179 * 9 7 5 13 13 N 1.46896 * 109.47069 * 59.82218 * 3 2 1 14 14 C 1.46901 * 111.00458 * 85.85249 * 13 3 2 15 15 C 1.52998 * 109.47777 * 175.80996 * 14 13 3 16 16 H 1.09001 * 109.46646 * 60.00056 * 15 14 13 17 17 O 1.42904 * 109.47029 * 300.00809 * 15 14 13 18 18 C 1.52993 * 109.47270 * 180.02562 * 15 14 13 19 19 C 1.53000 * 109.46977 * 185.00317 * 18 15 14 20 20 O 1.42905 * 112.85207 * 55.33304 * 19 18 15 21 21 C 1.53781 * 113.61490 * 284.13507 * 19 18 15 22 22 C 1.53955 * 87.02095 * 220.04959 * 21 19 18 23 23 C 1.53778 * 87.11100 * 25.36204 * 22 21 19 24 24 H 1.09001 * 109.46662 * 295.59441 * 1 2 3 25 25 H 1.09008 * 109.46958 * 175.60271 * 1 2 3 26 26 H 1.08990 * 109.47226 * 55.60090 * 1 2 3 27 27 H 1.09001 * 109.46902 * 120.00539 * 2 1 3 28 28 H 1.08996 * 109.46704 * 239.99983 * 2 1 3 29 29 H 0.96994 * 119.99392 * 179.97438 * 8 7 5 30 30 H 1.00897 * 111.00152 * 209.81142 * 13 3 2 31 31 H 1.08998 * 109.46976 * 295.81767 * 14 13 3 32 32 H 1.09004 * 109.46501 * 55.81138 * 14 13 3 33 33 H 0.96704 * 113.99163 * 299.99147 * 17 15 14 34 34 H 1.09007 * 109.46828 * 304.99899 * 18 15 14 35 35 H 1.08997 * 109.47236 * 64.99966 * 18 15 14 36 36 H 0.96700 * 114.00036 * 180.02562 * 20 19 18 37 37 H 1.09005 * 113.61382 * 334.56713 * 21 19 18 38 38 H 1.08996 * 113.61729 * 105.47005 * 21 19 18 39 39 H 1.09000 * 113.53777 * 270.81364 * 22 21 19 40 40 H 1.08998 * 113.74161 * 139.94318 * 22 21 19 41 41 H 1.08999 * 113.61588 * 220.09144 * 23 22 21 42 42 H 1.09003 * 113.69124 * 89.20152 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5413 2.1516 -1.2326 6 1 0.9201 3.0298 -1.1363 7 6 1.8781 1.6793 -2.4835 8 7 2.6342 0.6096 -2.6008 9 14 1.2593 2.5579 -4.0114 10 1 1.7537 3.9581 -4.0116 11 1 1.7575 1.8563 -5.2217 12 1 -0.2257 2.5572 -4.0155 13 7 1.5469 2.1362 1.1972 14 6 2.4381 1.9081 2.3426 15 6 1.9510 2.7277 3.5391 16 1 0.9379 2.4220 3.8006 17 8 1.9570 4.1158 3.1998 18 6 2.8796 2.4905 4.7317 19 6 2.3236 3.2103 5.9620 20 8 0.9790 2.8330 6.2652 21 6 2.5460 4.7318 5.9385 22 6 2.8600 4.6282 7.4422 23 6 3.2642 3.1682 7.1778 24 1 -0.3633 0.4440 0.9269 25 1 -0.3633 -1.0247 -0.0788 26 1 -0.3633 0.5805 -0.8479 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.8708 0.2772 -3.4807 30 1 1.4298 3.1227 1.0211 31 1 2.4334 0.8492 2.6013 32 1 3.4512 2.2137 2.0810 33 1 2.8283 4.4572 2.9559 34 1 2.9445 1.4215 4.9346 35 1 3.8722 2.8777 4.5019 36 1 0.6107 3.2788 7.0403 37 1 3.3998 5.0389 5.3344 38 1 1.6435 5.3017 5.7182 39 1 1.9807 4.7294 8.0784 40 1 3.6888 5.2597 7.7620 41 1 2.9406 2.4777 7.9566 42 1 4.3145 3.0456 6.9133 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599437565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:32 Heat of formation + Delta-G solvation = -93.699099 kcal Electronic energy + Delta-G solvation = -20078.192050 eV Core-core repulsion = 17058.339934 eV Total energy + Delta-G solvation = -3019.852116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11382 -37.46387 -35.54984 -34.37980 -32.48977 -31.20845 -30.21187 -27.08776 -25.87288 -25.14711 -23.15258 -22.43211 -21.02877 -19.80052 -18.92298 -16.91186 -16.63312 -16.07766 -15.47701 -15.34003 -14.90021 -14.44547 -13.87539 -13.62016 -13.31635 -13.21828 -13.04618 -12.86017 -12.50485 -12.11358 -11.79164 -11.68640 -11.25714 -11.13708 -11.05830 -10.88917 -10.77773 -10.59261 -10.46407 -10.29639 -10.07649 -9.84526 -9.69303 -9.37803 -9.17261 -8.71638 -8.41725 -7.13420 -5.97791 -4.02926 3.33839 3.38160 3.41494 4.05037 4.27174 4.35732 4.44069 4.54006 4.69381 4.82230 5.03058 5.31286 5.34749 5.42392 5.51936 5.56434 5.64805 5.73625 5.78699 5.80669 5.96338 5.98347 6.00826 6.21363 6.31659 6.60226 6.63982 6.74603 6.91877 7.29409 7.38149 7.55543 7.57447 7.80585 7.84698 7.88940 7.97801 8.34148 8.48170 8.76813 9.08134 9.61710 11.08109 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.037655 B = 0.004157 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.410863 B = 6734.087254 C = 7020.651114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.215 3.785 4 H -0.003 1.003 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.031 3.969 15 C 0.114 3.886 16 H 0.110 0.890 17 O -0.555 6.555 18 C -0.129 4.129 19 C 0.123 3.877 20 O -0.536 6.536 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.172 4.172 24 H 0.042 0.958 25 H 0.012 0.988 26 H 0.056 0.944 27 H 0.008 0.992 28 H 0.086 0.914 29 H 0.260 0.740 30 H 0.337 0.663 31 H 0.067 0.933 32 H 0.016 0.984 33 H 0.363 0.637 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.373 0.627 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.207 5.539 17.809 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.015 0.985 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.313 5.313 14 C -0.100 4.100 15 C 0.055 3.945 16 H 0.128 0.872 17 O -0.358 6.358 18 C -0.168 4.168 19 C 0.082 3.918 20 O -0.341 6.341 21 C -0.192 4.192 22 C -0.190 4.190 23 C -0.210 4.210 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.209 0.791 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.220 0.780 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.304 4.463 17.429 18.039 hybrid contribution 1.146 1.238 -0.654 1.809 sum 2.449 5.701 16.775 17.886 Atomic orbital electron populations 1.21447 0.97503 0.97339 1.01388 1.21430 0.95060 0.98343 0.99274 1.19134 0.92706 0.91506 0.85878 0.98515 1.21178 1.31491 1.11918 0.90371 0.92337 1.24891 0.95082 0.95023 0.98899 1.69881 1.36793 1.22756 1.23514 0.86633 0.79304 0.79612 0.82292 1.20399 1.21396 1.20192 1.60610 1.48371 1.16480 1.05789 1.22606 0.94322 0.99954 0.93122 1.21957 1.00553 0.80899 0.91091 0.87232 1.86628 1.34747 1.24609 1.89852 1.22168 0.98988 1.01462 0.94135 1.22062 0.82356 0.93809 0.93616 1.86530 1.26986 1.69141 1.51437 1.23607 1.02879 0.97384 0.95319 1.22962 1.01470 0.97056 0.97512 1.23749 1.01003 0.97063 0.99207 0.93922 0.96845 0.92522 0.97348 0.89615 0.92977 0.84504 0.91446 0.96560 0.79101 0.90392 0.90507 0.77975 0.89503 0.90432 0.90455 0.91239 0.91100 0.89344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 9.52 37.16 0.35 -2.44 16 2 C -0.10 -2.56 5.59 -26.73 -0.15 -2.71 16 3 C 0.22 5.47 2.30 -68.87 -0.16 5.31 16 4 H 0.00 -0.08 7.72 -51.93 -0.40 -0.48 16 5 C -0.51 -13.97 7.26 -34.44 -0.25 -14.22 16 6 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 9 Si 0.89 21.44 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.72 5.64 -107.96 -0.61 -15.33 16 14 C 0.03 0.55 5.24 -3.82 -0.02 0.53 16 15 C 0.11 1.70 3.15 -26.74 -0.08 1.62 16 16 H 0.11 1.90 7.58 -51.93 -0.39 1.51 16 17 O -0.55 -8.10 11.17 -35.23 -0.39 -8.50 16 18 C -0.13 -1.54 4.59 -26.73 -0.12 -1.66 16 19 C 0.12 1.31 1.40 -89.81 -0.13 1.19 16 20 O -0.54 -6.36 12.77 -35.23 -0.45 -6.81 16 21 C -0.15 -1.48 6.10 -25.83 -0.16 -1.64 16 22 C -0.15 -1.19 7.76 -25.83 -0.20 -1.39 16 23 C -0.17 -1.49 7.44 -25.92 -0.19 -1.69 16 24 H 0.04 0.96 7.74 -51.93 -0.40 0.56 16 25 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.06 1.42 7.07 -51.93 -0.37 1.05 16 27 H 0.01 0.19 7.59 -51.93 -0.39 -0.21 16 28 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 29 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.34 7.36 7.49 -39.29 -0.29 7.07 16 31 H 0.07 1.24 7.60 -51.93 -0.39 0.85 16 32 H 0.02 0.29 7.95 -51.93 -0.41 -0.12 16 33 H 0.36 4.24 9.04 45.56 0.41 4.66 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 36 H 0.37 2.99 8.33 45.56 0.38 3.37 16 37 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.52 7.80 -51.93 -0.40 0.12 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 330.28 15.07 4.98 4.98 Total: -1.00 -29.96 330.28 -7.97 -37.93 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -5.89 Total: 11.64 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.20 Total: -15.47 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.02 Total: -40.18 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.84 Total: -15.30 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.96 -7.97 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599437565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.771 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds