Wall clock time and date at job start Mon Mar 30 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47108 * 2 1 4 4 H 1.08999 * 109.47076 * 179.82134 * 3 2 1 5 5 C 1.50696 * 109.47053 * 299.82303 * 3 2 1 6 6 H 1.08001 * 120.00434 * 120.00342 * 5 3 2 7 7 C 1.37883 * 120.00057 * 299.99579 * 5 3 2 8 8 N 1.31518 * 119.99701 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99918 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47122 * 60.00607 * 9 7 5 11 11 H 1.48501 * 109.46898 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47291 * 300.00179 * 9 7 5 13 13 N 1.46896 * 109.47069 * 59.82218 * 3 2 1 14 14 C 1.46901 * 111.00458 * 85.85249 * 13 3 2 15 15 C 1.52998 * 109.47777 * 175.80996 * 14 13 3 16 16 H 1.09001 * 109.46646 * 60.00056 * 15 14 13 17 17 O 1.42904 * 109.47029 * 300.00809 * 15 14 13 18 18 C 1.52993 * 109.47270 * 180.02562 * 15 14 13 19 19 C 1.53000 * 109.46977 * 185.00317 * 18 15 14 20 20 O 1.42905 * 112.85207 * 55.33304 * 19 18 15 21 21 C 1.53781 * 113.61490 * 284.13507 * 19 18 15 22 22 C 1.53955 * 87.02095 * 220.04959 * 21 19 18 23 23 C 1.53778 * 87.11100 * 25.36204 * 22 21 19 24 24 H 1.09001 * 109.46662 * 295.59441 * 1 2 3 25 25 H 1.09008 * 109.46958 * 175.60271 * 1 2 3 26 26 H 1.08990 * 109.47226 * 55.60090 * 1 2 3 27 27 H 1.09001 * 109.46902 * 120.00539 * 2 1 3 28 28 H 1.08996 * 109.46704 * 239.99983 * 2 1 3 29 29 H 0.96994 * 119.99392 * 179.97438 * 8 7 5 30 30 H 1.00897 * 111.00152 * 209.81142 * 13 3 2 31 31 H 1.08998 * 109.46976 * 295.81767 * 14 13 3 32 32 H 1.09004 * 109.46501 * 55.81138 * 14 13 3 33 33 H 0.96704 * 113.99163 * 299.99147 * 17 15 14 34 34 H 1.09007 * 109.46828 * 304.99899 * 18 15 14 35 35 H 1.08997 * 109.47236 * 64.99966 * 18 15 14 36 36 H 0.96700 * 114.00036 * 180.02562 * 20 19 18 37 37 H 1.09005 * 113.61382 * 334.56713 * 21 19 18 38 38 H 1.08996 * 113.61729 * 105.47005 * 21 19 18 39 39 H 1.09000 * 113.53777 * 270.81364 * 22 21 19 40 40 H 1.08998 * 113.74161 * 139.94318 * 22 21 19 41 41 H 1.08999 * 113.61588 * 220.09144 * 23 22 21 42 42 H 1.09003 * 113.69124 * 89.20152 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5413 2.1516 -1.2326 6 1 0.9201 3.0298 -1.1363 7 6 1.8781 1.6793 -2.4835 8 7 2.6342 0.6096 -2.6008 9 14 1.2593 2.5579 -4.0114 10 1 1.7537 3.9581 -4.0116 11 1 1.7575 1.8563 -5.2217 12 1 -0.2257 2.5572 -4.0155 13 7 1.5469 2.1362 1.1972 14 6 2.4381 1.9081 2.3426 15 6 1.9510 2.7277 3.5391 16 1 0.9379 2.4220 3.8006 17 8 1.9570 4.1158 3.1998 18 6 2.8796 2.4905 4.7317 19 6 2.3236 3.2103 5.9620 20 8 0.9790 2.8330 6.2652 21 6 2.5460 4.7318 5.9385 22 6 2.8600 4.6282 7.4422 23 6 3.2642 3.1682 7.1778 24 1 -0.3633 0.4440 0.9269 25 1 -0.3633 -1.0247 -0.0788 26 1 -0.3633 0.5805 -0.8479 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 2.8708 0.2772 -3.4807 30 1 1.4298 3.1227 1.0211 31 1 2.4334 0.8492 2.6013 32 1 3.4512 2.2137 2.0810 33 1 2.8283 4.4572 2.9559 34 1 2.9445 1.4215 4.9346 35 1 3.8722 2.8777 4.5019 36 1 0.6107 3.2788 7.0403 37 1 3.3998 5.0389 5.3344 38 1 1.6435 5.3017 5.7182 39 1 1.9807 4.7294 8.0784 40 1 3.6888 5.2597 7.7620 41 1 2.9406 2.4777 7.9566 42 1 4.3145 3.0456 6.9133 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599437565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:31 Heat of formation + Delta-G solvation = -116.729837 kcal Electronic energy + Delta-G solvation = -20079.190737 eV Core-core repulsion = 17058.339934 eV Total energy + Delta-G solvation = -3020.850803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.93561 -38.84044 -37.25886 -35.18641 -34.33259 -32.78574 -31.72483 -28.78916 -26.78593 -26.52957 -25.04711 -23.59964 -22.21157 -20.95570 -20.51547 -18.47580 -17.72885 -17.29146 -16.98351 -16.63990 -16.25495 -15.81220 -15.32915 -15.04197 -14.89600 -14.44950 -14.20905 -13.94094 -13.86337 -13.49921 -13.34269 -13.05332 -12.80749 -12.65558 -12.59079 -12.43816 -11.98648 -11.87557 -11.78949 -11.73064 -11.60497 -11.36390 -11.30142 -10.81983 -10.60934 -10.51672 -10.32563 -8.94905 -8.09088 -6.21402 1.42684 1.44504 1.51699 2.43226 3.18767 3.25812 3.34067 3.63072 3.71835 3.74592 3.91131 3.99536 4.24193 4.30956 4.47703 4.61939 4.63432 4.76057 4.78328 4.82940 4.85154 4.90327 4.93800 4.99340 5.07886 5.17463 5.21528 5.28833 5.35614 5.42060 5.51037 5.56669 5.71713 5.82155 5.89384 6.29032 6.53374 6.82226 6.88207 6.93358 7.07457 7.47427 8.95777 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.037655 B = 0.004157 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.410863 B = 6734.087254 C = 7020.651114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.221 3.779 4 H -0.036 1.036 5 C -0.525 4.525 6 H 0.054 0.946 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.680 5.680 14 C 0.032 3.968 15 C 0.131 3.869 16 H 0.086 0.914 17 O -0.563 6.563 18 C -0.126 4.126 19 C 0.112 3.888 20 O -0.559 6.559 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.165 4.165 24 H 0.048 0.952 25 H 0.033 0.967 26 H 0.035 0.965 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.261 0.739 30 H 0.335 0.665 31 H 0.061 0.939 32 H 0.019 0.981 33 H 0.377 0.623 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.388 0.612 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 6.408 18.903 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.138 4.138 3 C 0.113 3.887 4 H -0.019 1.019 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.781 3.219 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.311 5.311 14 C -0.098 4.098 15 C 0.072 3.928 16 H 0.104 0.896 17 O -0.369 6.369 18 C -0.164 4.164 19 C 0.071 3.929 20 O -0.366 6.366 21 C -0.192 4.192 22 C -0.180 4.180 23 C -0.202 4.202 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.153 0.847 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.225 0.775 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.237 0.763 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.346 5.349 18.550 19.352 hybrid contribution 1.145 0.966 -0.964 1.781 sum 2.491 6.315 17.586 18.851 Atomic orbital electron populations 1.21304 0.96101 0.98326 1.00713 1.21324 0.96202 0.97871 0.98412 1.18938 0.90620 0.92139 0.87024 1.01867 1.21422 1.31455 1.11978 0.91457 0.92736 1.25629 0.95199 0.95658 1.01701 1.70011 1.37649 1.23879 1.24089 0.85660 0.78760 0.78719 0.78792 1.19669 1.21026 1.19840 1.60529 1.49198 1.16028 1.05349 1.22679 0.93904 1.00321 0.92885 1.21637 0.99857 0.80530 0.90792 0.89634 1.86595 1.36147 1.24183 1.89949 1.22136 0.99134 1.01726 0.93380 1.22173 0.82450 0.94300 0.93956 1.86483 1.27768 1.69837 1.52561 1.23596 1.02409 0.96235 0.96971 1.22942 1.02279 0.96490 0.96249 1.23701 1.00797 0.97724 0.98024 0.93262 0.94786 0.94579 0.96312 0.92285 0.92992 0.84710 0.92041 0.96296 0.77482 0.90709 0.88719 0.76297 0.89076 0.91871 0.89344 0.90178 0.90743 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.95 9.52 71.98 0.69 -4.26 16 2 C -0.10 -5.00 5.59 30.60 0.17 -4.83 16 3 C 0.22 11.41 2.30 44.17 0.10 11.51 16 4 H -0.04 -2.07 7.72 -2.39 -0.02 -2.09 16 5 C -0.52 -28.94 7.26 25.60 0.19 -28.76 16 6 H 0.05 2.99 7.60 -2.91 -0.02 2.97 16 7 C 0.02 0.96 5.30 84.66 0.45 1.41 16 8 N -0.92 -53.09 11.32 21.45 0.24 -52.85 16 9 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.68 -29.53 5.64 -495.47 -2.80 -32.33 16 14 C 0.03 1.15 5.24 86.30 0.45 1.60 16 15 C 0.13 3.84 3.15 30.59 0.10 3.93 16 16 H 0.09 2.96 7.58 -2.39 -0.02 2.94 16 17 O -0.56 -15.93 11.17 -148.98 -1.66 -17.59 16 18 C -0.13 -2.83 4.59 30.59 0.14 -2.68 16 19 C 0.11 2.22 1.40 -10.27 -0.01 2.20 16 20 O -0.56 -12.65 12.77 -148.98 -1.90 -14.56 16 21 C -0.15 -2.68 6.10 31.18 0.19 -2.49 16 22 C -0.14 -1.85 7.76 31.18 0.24 -1.60 16 23 C -0.16 -2.44 7.44 31.12 0.23 -2.21 16 24 H 0.05 2.17 7.74 -2.39 -0.02 2.16 16 25 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 26 H 0.04 1.79 7.07 -2.39 -0.02 1.77 16 27 H 0.02 0.87 7.59 -2.39 -0.02 0.85 16 28 H 0.06 3.30 6.06 -2.39 -0.01 3.29 16 29 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.33 14.68 7.49 -89.70 -0.67 14.01 16 31 H 0.06 2.26 7.60 -2.39 -0.02 2.24 16 32 H 0.02 0.67 7.95 -2.38 -0.02 0.65 16 33 H 0.38 8.30 9.04 -74.05 -0.67 7.63 16 34 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.09 1.77 8.09 -2.39 -0.02 1.75 16 36 H 0.39 5.71 8.33 -74.06 -0.62 5.10 16 37 H 0.09 1.48 8.06 -2.38 -0.02 1.46 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 0.95 7.80 -2.39 -0.02 0.94 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.10 1.29 8.10 -2.39 -0.02 1.27 16 Total: -1.00 -63.79 330.28 -2.11 -65.90 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.95 Total: 31.66 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 2.93 Total: -26.19 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -2.55 Total: -85.18 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -3.57 Total: -32.15 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -63.79 -2.11 -65.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599437565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.832 kcal (2) G-P(sol) polarization free energy of solvation -63.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds