Wall clock time and date at job start Mon Mar 30 2020 04:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 113.99944 * 2 1 4 4 C 1.53002 * 109.47183 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47503 * 63.56398 * 4 3 2 6 6 C 1.36944 * 119.99755 * 83.51348 * 5 4 3 7 7 H 1.08006 * 119.99638 * 167.93499 * 6 5 4 8 8 C 1.38806 * 120.00016 * 347.93416 * 6 5 4 9 9 N 1.31618 * 120.00258 * 8.86411 * 8 6 5 10 10 Si 1.86802 * 119.99731 * 188.86893 * 8 6 5 11 11 H 1.48503 * 109.47422 * 60.00176 * 10 8 6 12 12 H 1.48505 * 109.46837 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46974 * 299.99655 * 10 8 6 14 14 C 1.46498 * 120.00122 * 263.51625 * 5 4 3 15 15 C 1.53001 * 109.47059 * 264.38948 * 14 5 4 16 16 H 1.08997 * 110.67633 * 303.43874 * 15 14 5 17 17 C 1.54999 * 110.61867 * 180.46833 * 15 14 5 18 18 C 1.54809 * 102.09332 * 204.47782 * 17 15 14 19 19 C 1.52998 * 110.48872 * 262.20965 * 18 17 15 20 20 C 1.52992 * 110.60253 * 139.61167 * 18 17 15 21 21 C 1.54101 * 104.18795 * 20.87988 * 18 17 15 22 22 O 1.43748 * 107.29447 * 2.03315 * 21 18 17 23 23 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47123 * 300.00339 * 1 2 3 25 25 H 1.09002 * 109.47598 * 59.99954 * 1 2 3 26 26 H 1.08996 * 109.47705 * 60.00126 * 3 2 1 27 27 H 1.09002 * 109.47069 * 299.99859 * 3 2 1 28 28 H 1.08996 * 109.46869 * 303.56209 * 4 3 2 29 29 H 1.08997 * 109.47215 * 183.56724 * 4 3 2 30 30 H 0.97001 * 120.00091 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.47463 * 144.39178 * 14 5 4 32 32 H 1.09003 * 109.47278 * 24.39060 * 14 5 4 33 33 H 1.09000 * 110.90783 * 322.67884 * 17 15 14 34 34 H 1.08998 * 110.90277 * 86.27972 * 17 15 14 35 35 H 1.09002 * 109.47345 * 176.22341 * 19 18 17 36 36 H 1.09008 * 109.46568 * 296.21787 * 19 18 17 37 37 H 1.08999 * 109.47486 * 56.21920 * 19 18 17 38 38 H 1.09003 * 109.47527 * 303.71650 * 20 18 17 39 39 H 1.09001 * 109.46902 * 63.71464 * 20 18 17 40 40 H 1.09000 * 109.47848 * 183.71442 * 20 18 17 41 41 H 1.09001 * 109.88300 * 242.60730 * 21 18 17 42 42 H 1.09001 * 109.87845 * 121.45425 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9732 0.5334 -1.2376 6 6 4.1334 1.2711 -2.3802 7 1 4.6370 0.8420 -3.2339 8 6 3.6487 2.5704 -2.4411 9 7 3.1933 3.1546 -1.3531 10 14 3.6427 3.4897 -4.0672 11 1 2.8115 2.7503 -5.0509 12 1 3.0797 4.8490 -3.8653 13 1 5.0326 3.6010 -4.5781 14 6 4.2396 -0.9071 -1.2524 15 6 5.7352 -1.1513 -1.0411 16 1 6.3212 -0.6269 -1.7958 17 6 6.0489 -2.6691 -1.0638 18 6 7.3562 -2.7424 -0.2379 19 6 8.5732 -2.7856 -1.1643 20 6 7.3429 -3.9634 0.6839 21 6 7.3540 -1.4421 0.5891 22 8 6.1342 -0.7448 0.2856 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8531 0.5895 0.8554 29 1 3.9786 2.1784 0.0633 30 1 2.8549 4.0627 -1.3956 31 1 3.9358 -1.3230 -2.2131 32 1 3.6763 -1.3890 -0.4533 33 1 5.2529 -3.2381 -0.5835 34 1 6.2130 -3.0171 -2.0836 35 1 9.4850 -2.7693 -0.5673 36 1 8.5447 -3.6986 -1.7592 37 1 8.5568 -1.9198 -1.8263 38 1 6.4605 -3.9267 1.3228 39 1 7.3187 -4.8723 0.0827 40 1 8.2400 -3.9612 1.3030 41 1 8.2108 -0.8268 0.3148 42 1 7.3906 -1.6792 1.6524 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602838021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:11 Heat of formation + Delta-G solvation = -67.367977 kcal Electronic energy + Delta-G solvation = -20775.049727 eV Core-core repulsion = 17756.339414 eV Total energy + Delta-G solvation = -3018.710312 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.43560 -36.94019 -35.26061 -34.06959 -31.68506 -29.80244 -28.26003 -27.33203 -25.85088 -25.42844 -25.06711 -22.76960 -20.82286 -19.93195 -19.04794 -16.68780 -15.87633 -15.21485 -15.12112 -14.84433 -14.50641 -14.32983 -13.85195 -13.74766 -13.42626 -13.21649 -13.11826 -12.66710 -12.43369 -11.88988 -11.49891 -11.48491 -11.22456 -10.96915 -10.86167 -10.73951 -10.70019 -10.58470 -10.42483 -10.31198 -10.08822 -9.85140 -9.72145 -9.43467 -8.94313 -8.76463 -8.11059 -6.65085 -5.55781 -3.04170 3.42306 3.47827 3.48560 4.43040 4.56993 4.70298 4.88882 5.04717 5.09818 5.37098 5.46585 5.48336 5.59984 5.67674 5.74919 5.80978 5.89023 5.98143 6.00426 6.01533 6.03532 6.08261 6.22100 6.23803 6.25258 6.37999 6.46263 6.51628 6.69257 6.80663 6.97022 7.03064 7.26429 7.63837 7.66725 7.91169 7.97072 8.42618 8.58851 9.37800 9.98974 10.45017 11.36813 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.006846 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.230310 B = 4088.956539 C = 5041.960539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.401 6.401 3 C 0.059 3.941 4 C 0.182 3.818 5 N -0.589 5.589 6 C -0.226 4.226 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.918 5.918 10 Si 0.907 3.093 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.287 1.287 14 C 0.162 3.838 15 C 0.059 3.941 16 H 0.062 0.938 17 C -0.142 4.142 18 C -0.103 4.103 19 C -0.136 4.136 20 C -0.133 4.133 21 C 0.054 3.946 22 O -0.357 6.357 23 H 0.065 0.935 24 H 0.023 0.977 25 H 0.029 0.971 26 H 0.009 0.991 27 H 0.081 0.919 28 H 0.013 0.987 29 H 0.116 0.884 30 H 0.249 0.751 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -10.633 2.811 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.321 6.321 3 C -0.019 4.019 4 C 0.057 3.943 5 N -0.308 5.308 6 C -0.356 4.356 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.568 5.568 10 Si 0.738 3.262 11 H -0.215 1.215 12 H -0.217 1.217 13 H -0.214 1.214 14 C 0.034 3.966 15 C -0.001 4.001 16 H 0.080 0.920 17 C -0.180 4.180 18 C -0.104 4.104 19 C -0.193 4.193 20 C -0.191 4.191 21 C -0.024 4.024 22 O -0.276 6.276 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.027 0.973 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.134 0.866 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.648 -10.452 2.942 11.811 hybrid contribution -0.106 0.640 -0.997 1.189 sum 4.542 -9.812 1.945 10.986 Atomic orbital electron populations 1.22463 0.84406 1.00383 0.98609 1.87867 1.16885 1.32100 1.95235 1.24072 0.97355 0.80985 0.99460 1.21101 0.89506 0.98975 0.84761 1.43918 1.77221 1.01654 1.08002 1.19356 1.29135 0.95420 0.91675 0.91089 1.24776 1.01117 0.97662 0.97277 1.70094 1.48406 1.13227 1.25048 0.86258 0.77570 0.78818 0.83506 1.21453 1.21730 1.21360 1.20766 0.89700 0.86620 0.99481 1.24170 1.00553 0.90685 0.84687 0.92009 1.23290 0.96152 0.98712 0.99840 1.21948 0.96091 0.96184 0.96132 1.21845 0.96606 1.01882 0.98968 1.21815 1.01700 0.96728 0.98836 1.23203 0.89196 0.91151 0.98839 1.88997 1.38993 1.66521 1.33089 0.91632 0.95837 0.95283 0.97316 0.90072 0.96880 0.86641 0.93966 0.92991 0.92587 0.90746 0.90960 0.92770 0.92651 0.92318 0.92271 0.92728 0.92861 0.93288 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 11.01 101.05 1.11 1.83 16 2 O -0.40 -9.30 10.40 -35.23 -0.37 -9.67 16 3 C 0.06 1.45 5.45 37.16 0.20 1.65 16 4 C 0.18 4.70 5.35 -4.04 -0.02 4.67 16 5 N -0.59 -15.07 2.47 -173.24 -0.43 -15.49 16 6 C -0.23 -6.16 9.75 -15.06 -0.15 -6.31 16 7 H 0.07 1.87 7.84 -52.48 -0.41 1.46 16 8 C -0.01 -0.39 5.12 -17.43 -0.09 -0.48 16 9 N -0.92 -25.60 7.43 55.49 0.41 -25.18 16 10 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 C 0.16 3.53 5.33 -4.04 -0.02 3.51 16 15 C 0.06 1.13 3.55 -25.67 -0.09 1.04 16 16 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 17 C -0.14 -2.10 5.70 -24.72 -0.14 -2.24 16 18 C -0.10 -1.35 0.99 -152.99 -0.15 -1.50 16 19 C -0.14 -1.55 8.25 37.16 0.31 -1.25 16 20 C -0.13 -1.47 8.27 37.15 0.31 -1.16 16 21 C 0.05 0.83 7.04 37.73 0.27 1.10 16 22 O -0.36 -7.25 11.14 -35.23 -0.39 -7.65 16 23 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.08 2.23 5.99 -51.93 -0.31 1.91 16 28 H 0.01 0.33 7.95 -51.93 -0.41 -0.08 16 29 H 0.12 3.27 5.86 -51.93 -0.30 2.97 16 30 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.05 1.09 8.09 -51.93 -0.42 0.67 16 32 H 0.06 1.24 7.86 -51.93 -0.41 0.83 16 33 H 0.07 1.08 7.79 -51.93 -0.40 0.68 16 34 H 0.07 0.97 7.86 -51.93 -0.41 0.57 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.74 7.69 -51.93 -0.40 0.34 16 42 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -29.19 330.63 -6.95 -36.14 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.66 Total: -0.83 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 1.53 Total: 0.88 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.01 Total: -40.68 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.76 Total: -17.32 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.19 -6.95 -36.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602838021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.228 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds