Wall clock time and date at job start Mon Mar 30 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 113.99944 * 2 1 4 4 C 1.53002 * 109.47183 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47503 * 63.56398 * 4 3 2 6 6 C 1.36944 * 119.99755 * 83.51348 * 5 4 3 7 7 H 1.08006 * 119.99638 * 167.93499 * 6 5 4 8 8 C 1.38806 * 120.00016 * 347.93416 * 6 5 4 9 9 N 1.31618 * 120.00258 * 8.86411 * 8 6 5 10 10 Si 1.86802 * 119.99731 * 188.86893 * 8 6 5 11 11 H 1.48503 * 109.47422 * 60.00176 * 10 8 6 12 12 H 1.48505 * 109.46837 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.46974 * 299.99655 * 10 8 6 14 14 C 1.46498 * 120.00122 * 263.51625 * 5 4 3 15 15 C 1.53001 * 109.47059 * 264.38948 * 14 5 4 16 16 H 1.08997 * 110.67633 * 303.43874 * 15 14 5 17 17 C 1.54999 * 110.61867 * 180.46833 * 15 14 5 18 18 C 1.54809 * 102.09332 * 204.47782 * 17 15 14 19 19 C 1.52998 * 110.48872 * 262.20965 * 18 17 15 20 20 C 1.52992 * 110.60253 * 139.61167 * 18 17 15 21 21 C 1.54101 * 104.18795 * 20.87988 * 18 17 15 22 22 O 1.43748 * 107.29447 * 2.03315 * 21 18 17 23 23 H 1.09003 * 109.47313 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47123 * 300.00339 * 1 2 3 25 25 H 1.09002 * 109.47598 * 59.99954 * 1 2 3 26 26 H 1.08996 * 109.47705 * 60.00126 * 3 2 1 27 27 H 1.09002 * 109.47069 * 299.99859 * 3 2 1 28 28 H 1.08996 * 109.46869 * 303.56209 * 4 3 2 29 29 H 1.08997 * 109.47215 * 183.56724 * 4 3 2 30 30 H 0.97001 * 120.00091 * 179.97438 * 9 8 6 31 31 H 1.09004 * 109.47463 * 144.39178 * 14 5 4 32 32 H 1.09003 * 109.47278 * 24.39060 * 14 5 4 33 33 H 1.09000 * 110.90783 * 322.67884 * 17 15 14 34 34 H 1.08998 * 110.90277 * 86.27972 * 17 15 14 35 35 H 1.09002 * 109.47345 * 176.22341 * 19 18 17 36 36 H 1.09008 * 109.46568 * 296.21787 * 19 18 17 37 37 H 1.08999 * 109.47486 * 56.21920 * 19 18 17 38 38 H 1.09003 * 109.47527 * 303.71650 * 20 18 17 39 39 H 1.09001 * 109.46902 * 63.71464 * 20 18 17 40 40 H 1.09000 * 109.47848 * 183.71442 * 20 18 17 41 41 H 1.09001 * 109.88300 * 242.60730 * 21 18 17 42 42 H 1.09001 * 109.87845 * 121.45425 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9732 0.5334 -1.2376 6 6 4.1334 1.2711 -2.3802 7 1 4.6370 0.8420 -3.2339 8 6 3.6487 2.5704 -2.4411 9 7 3.1933 3.1546 -1.3531 10 14 3.6427 3.4897 -4.0672 11 1 2.8115 2.7503 -5.0509 12 1 3.0797 4.8490 -3.8653 13 1 5.0326 3.6010 -4.5781 14 6 4.2396 -0.9071 -1.2524 15 6 5.7352 -1.1513 -1.0411 16 1 6.3212 -0.6269 -1.7958 17 6 6.0489 -2.6691 -1.0638 18 6 7.3562 -2.7424 -0.2379 19 6 8.5732 -2.7856 -1.1643 20 6 7.3429 -3.9634 0.6839 21 6 7.3540 -1.4421 0.5891 22 8 6.1342 -0.7448 0.2856 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6885 1.8464 -0.8900 28 1 3.8531 0.5895 0.8554 29 1 3.9786 2.1784 0.0633 30 1 2.8549 4.0627 -1.3956 31 1 3.9358 -1.3230 -2.2131 32 1 3.6763 -1.3890 -0.4533 33 1 5.2529 -3.2381 -0.5835 34 1 6.2130 -3.0171 -2.0836 35 1 9.4850 -2.7693 -0.5673 36 1 8.5447 -3.6986 -1.7592 37 1 8.5568 -1.9198 -1.8263 38 1 6.4605 -3.9267 1.3228 39 1 7.3187 -4.8723 0.0827 40 1 8.2400 -3.9612 1.3030 41 1 8.2108 -0.8268 0.3148 42 1 7.3906 -1.6792 1.6524 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602838021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:10 Heat of formation + Delta-G solvation = -84.886022 kcal Electronic energy + Delta-G solvation = -20775.809366 eV Core-core repulsion = 17756.339414 eV Total energy + Delta-G solvation = -3019.469952 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75507 -38.78723 -37.07917 -35.35307 -33.55430 -31.55416 -30.05061 -28.20331 -27.27341 -27.05156 -26.55123 -24.61420 -22.58239 -21.70775 -20.20994 -18.66308 -17.44188 -16.99246 -16.63433 -16.44880 -16.22846 -15.85767 -15.56214 -15.20614 -14.83675 -14.58502 -14.32359 -14.09325 -13.77706 -13.37984 -13.12569 -12.79571 -12.73254 -12.60704 -12.46724 -12.37967 -12.37160 -12.10269 -11.84956 -11.78187 -11.56820 -11.53342 -11.48381 -11.25482 -10.71052 -10.39167 -10.05437 -8.66157 -7.63872 -5.13480 1.49573 1.51298 1.57439 2.55253 3.13388 3.30839 3.38398 3.58793 3.68871 3.92066 3.98969 4.33957 4.35001 4.43179 4.54768 4.60316 4.67682 4.73750 4.77749 4.81363 4.81937 4.82819 4.85211 4.93688 4.99455 5.03686 5.07598 5.10341 5.19941 5.24833 5.31761 5.40730 5.50077 5.57502 5.84506 5.87740 6.25019 6.43165 6.67692 7.28228 7.97834 8.41218 9.27342 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.006846 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.230310 B = 4088.956539 C = 5041.960539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.419 6.419 3 C 0.076 3.924 4 C 0.191 3.809 5 N -0.602 5.602 6 C -0.241 4.241 7 H 0.074 0.926 8 C -0.061 4.061 9 N -0.934 5.934 10 Si 0.968 3.032 11 H -0.284 1.284 12 H -0.295 1.295 13 H -0.282 1.282 14 C 0.163 3.837 15 C 0.063 3.937 16 H 0.041 0.959 17 C -0.132 4.132 18 C -0.096 4.096 19 C -0.133 4.133 20 C -0.129 4.129 21 C 0.045 3.955 22 O -0.394 6.394 23 H 0.097 0.903 24 H 0.040 0.960 25 H 0.025 0.975 26 H 0.014 0.986 27 H 0.054 0.946 28 H 0.009 0.991 29 H 0.087 0.913 30 H 0.244 0.756 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 -12.490 2.511 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.338 6.338 3 C -0.001 4.001 4 C 0.065 3.935 5 N -0.323 5.323 6 C -0.371 4.371 7 H 0.092 0.908 8 C -0.253 4.253 9 N -0.584 5.584 10 Si 0.798 3.202 11 H -0.210 1.210 12 H -0.221 1.221 13 H -0.209 1.209 14 C 0.037 3.963 15 C 0.003 3.997 16 H 0.059 0.941 17 C -0.170 4.170 18 C -0.097 4.097 19 C -0.190 4.190 20 C -0.186 4.186 21 C -0.032 4.032 22 O -0.314 6.314 23 H 0.115 0.885 24 H 0.058 0.942 25 H 0.044 0.956 26 H 0.032 0.968 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.151 -12.345 2.644 13.635 hybrid contribution -0.280 1.186 -0.848 1.485 sum 4.871 -11.158 1.796 12.307 Atomic orbital electron populations 1.22720 0.81711 1.02702 0.99241 1.87809 1.19792 1.30901 1.95338 1.23614 0.96671 0.81558 0.98294 1.20806 0.90356 0.97339 0.85006 1.44057 1.77730 1.03077 1.07409 1.19619 1.29273 0.95934 0.92289 0.90839 1.25462 1.01318 0.98506 1.00027 1.70288 1.48836 1.12996 1.26314 0.85308 0.77511 0.77282 0.80115 1.21045 1.22113 1.20864 1.20848 0.91501 0.84566 0.99406 1.23889 0.98031 0.93669 0.84071 0.94072 1.23231 0.97337 0.95098 1.01364 1.21938 0.95785 0.95798 0.96156 1.21833 0.96360 1.02078 0.98760 1.21787 1.02170 0.96047 0.98640 1.23465 0.87371 0.92203 1.00187 1.88948 1.41098 1.67984 1.33333 0.88505 0.94165 0.95617 0.96768 0.92804 0.97260 0.89523 0.94567 0.92559 0.93189 0.90338 0.89287 0.91271 0.90858 0.93866 0.93008 0.91086 0.91303 0.93351 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.16 11.01 113.37 1.25 2.41 16 2 O -0.42 -19.26 10.40 -148.98 -1.55 -20.81 16 3 C 0.08 3.84 5.45 71.98 0.39 4.23 16 4 C 0.19 10.14 5.35 86.38 0.46 10.60 16 5 N -0.60 -31.53 2.47 -702.01 -1.73 -33.26 16 6 C -0.24 -13.36 9.75 84.03 0.82 -12.54 16 7 H 0.07 3.93 7.84 -2.91 -0.02 3.91 16 8 C -0.06 -3.38 5.12 84.86 0.43 -2.94 16 9 N -0.93 -53.40 7.43 21.65 0.16 -53.24 16 10 Si 0.97 45.40 29.56 68.60 2.03 47.43 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 C 0.16 7.18 5.33 86.38 0.46 7.64 16 15 C 0.06 2.43 3.55 31.28 0.11 2.54 16 16 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 17 C -0.13 -3.69 5.70 31.90 0.18 -3.51 16 18 C -0.10 -2.31 0.99 -51.19 -0.05 -2.36 16 19 C -0.13 -2.69 8.25 71.98 0.59 -2.10 16 20 C -0.13 -2.42 8.27 71.98 0.60 -1.83 16 21 C 0.04 1.34 7.04 72.35 0.51 1.85 16 22 O -0.39 -16.17 11.14 -148.98 -1.66 -17.83 16 23 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 3.02 5.99 -2.39 -0.01 3.01 16 28 H 0.01 0.48 7.95 -2.39 -0.02 0.46 16 29 H 0.09 5.11 5.86 -2.39 -0.01 5.10 16 30 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 31 H 0.06 2.37 8.09 -2.38 -0.02 2.35 16 32 H 0.05 2.22 7.86 -2.39 -0.02 2.21 16 33 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 34 H 0.09 2.19 7.86 -2.39 -0.02 2.17 16 35 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.05 1.05 8.13 -2.39 -0.02 1.04 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.05 1.44 7.69 -2.39 -0.02 1.42 16 42 H 0.09 2.32 7.69 -2.39 -0.02 2.30 16 Total: -1.00 -63.58 330.63 3.96 -59.62 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.95 Total: 14.11 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 5.76 Total: 3.99 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -1.57 Total: -86.50 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -3.21 Total: -38.65 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -63.58 3.96 -59.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602838021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.268 kcal (2) G-P(sol) polarization free energy of solvation -63.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds