Wall clock time and date at job start Mon Mar 30 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46921 * 2 1 4 4 C 1.42898 * 114.00087 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.57151 * 29.83989 * 4 3 2 6 6 C 1.53089 * 109.51873 * 269.68485 * 4 3 2 7 7 O 1.42907 * 109.41357 * 182.48635 * 6 4 3 8 8 C 1.42903 * 114.09787 * 61.15404 * 7 6 4 9 9 C 1.53093 * 109.41683 * 298.84350 * 8 7 6 10 10 C 1.53169 * 109.52483 * 149.99773 * 4 3 2 11 11 H 1.09002 * 109.61548 * 56.97209 * 10 4 3 12 12 N 1.46906 * 109.54346 * 296.75137 * 10 4 3 13 13 C 1.46900 * 110.99889 * 160.22203 * 12 10 4 14 14 H 1.08999 * 109.47595 * 39.77814 * 13 12 10 15 15 C 1.50699 * 109.47258 * 159.77745 * 13 12 10 16 16 H 1.08002 * 119.99600 * 5.73056 * 15 13 12 17 17 C 1.37869 * 120.00438 * 185.72436 * 15 13 12 18 18 N 1.31515 * 120.00006 * 5.52155 * 17 15 13 19 19 Si 1.86799 * 120.00199 * 185.51848 * 17 15 13 20 20 H 1.48507 * 109.47245 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47192 * 299.99979 * 19 17 15 22 22 H 1.48500 * 109.47199 * 60.00403 * 19 17 15 23 23 C 1.53001 * 109.47323 * 279.77738 * 13 12 10 24 24 C 1.53001 * 109.47205 * 295.06697 * 23 13 12 25 25 H 1.09004 * 109.47275 * 300.00157 * 1 2 3 26 26 H 1.08995 * 109.47412 * 59.99915 * 1 2 3 27 27 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46915 * 240.00407 * 2 1 3 29 29 H 1.08998 * 109.47412 * 119.99310 * 2 1 3 30 30 H 1.08997 * 109.48587 * 62.50234 * 6 4 3 31 31 H 1.08996 * 109.48110 * 302.46392 * 6 4 3 32 32 H 1.09003 * 109.47639 * 178.85948 * 8 7 6 33 33 H 1.08999 * 109.48814 * 58.83632 * 8 7 6 34 34 H 1.08999 * 109.52000 * 297.70450 * 9 8 7 35 35 H 1.08996 * 109.52095 * 177.51576 * 9 8 7 36 36 H 1.00900 * 110.99943 * 36.27378 * 12 10 4 37 37 H 0.96999 * 119.99804 * 355.14897 * 18 17 15 38 38 H 1.09000 * 109.47135 * 55.06362 * 23 13 12 39 39 H 1.08998 * 109.47291 * 175.06765 * 23 13 12 40 40 H 1.08999 * 109.47016 * 185.01038 * 24 23 13 41 41 H 1.08998 * 109.46852 * 305.00473 * 24 23 13 42 42 H 1.08999 * 109.47111 * 65.00448 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.8650 0.6011 -0.5119 6 6 3.9407 1.5084 1.4421 7 8 5.3595 1.6795 1.4390 8 6 5.7999 2.8893 0.8189 9 6 5.3647 2.8966 -0.6488 10 6 3.8420 2.7471 -0.7224 11 1 3.3680 3.6033 -0.2426 12 7 3.4226 2.6773 -2.1286 13 6 3.3637 4.0174 -2.7275 14 1 4.2072 4.6106 -2.3743 15 6 3.4259 3.8999 -4.2286 16 1 3.4081 2.9260 -4.6952 17 6 3.5053 5.0355 -5.0063 18 7 3.6363 6.2141 -4.4377 19 14 3.4270 4.9002 -6.8678 20 1 3.5339 6.2546 -7.4675 21 1 4.5491 4.0558 -7.3504 22 1 2.1362 4.2828 -7.2653 23 6 2.0554 4.6997 -2.3231 24 6 0.8743 3.9344 -2.9233 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.6880 0.5767 1.9483 31 1 3.4750 2.3440 1.9645 32 1 6.8866 2.9523 0.8762 33 1 5.3587 3.7430 1.3332 34 1 5.8380 2.0665 -1.1732 35 1 5.6612 3.8377 -1.1119 36 1 2.5372 2.2018 -2.2186 37 1 3.6064 6.2923 -3.4713 38 1 1.9697 4.7062 -1.2365 39 1 2.0504 5.7246 -2.6941 40 1 -0.0512 4.4694 -2.7103 41 1 1.0058 3.8512 -4.0021 42 1 0.8269 2.9375 -2.4851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686602379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:46 Heat of formation + Delta-G solvation = -107.090341 kcal Electronic energy + Delta-G solvation = -20945.756498 eV Core-core repulsion = 17925.323695 eV Total energy + Delta-G solvation = -3020.432803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.74541 -37.37440 -36.61390 -33.53187 -31.58115 -31.25565 -29.77389 -28.97084 -25.83425 -23.79820 -23.28718 -23.23745 -22.46379 -20.16540 -19.16757 -17.15524 -16.68711 -16.29850 -16.00293 -15.30388 -14.89007 -14.43478 -14.19278 -13.71278 -13.43378 -13.27216 -13.12505 -12.79096 -12.55495 -12.35317 -12.18441 -11.63669 -11.50496 -11.33588 -11.09884 -11.00992 -10.75384 -10.69015 -10.37272 -10.20209 -10.07511 -9.96479 -9.86934 -9.72723 -9.10975 -8.57499 -8.19990 -7.30594 -6.26684 -3.96067 3.47128 3.48267 3.53367 3.67022 4.06052 4.54498 4.77615 4.85924 5.00743 5.08332 5.16377 5.27427 5.28265 5.35014 5.42756 5.46749 5.61053 5.67647 5.73900 5.87905 5.90681 5.92792 6.07746 6.13026 6.20940 6.21355 6.34991 6.39454 6.58002 6.79860 7.03814 7.09188 7.11046 7.30130 7.36766 7.39144 7.96073 8.31805 8.52240 8.67392 8.96675 9.72375 11.09488 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.006672 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.684239 B = 4195.791428 C = 5064.294144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.376 6.376 4 C 0.059 3.941 5 H 0.075 0.925 6 C 0.045 3.955 7 O -0.381 6.381 8 C 0.058 3.942 9 C -0.140 4.140 10 C 0.090 3.910 11 H 0.041 0.959 12 N -0.669 5.669 13 C 0.205 3.795 14 H 0.026 0.974 15 C -0.569 4.569 16 H 0.053 0.947 17 C 0.017 3.983 18 N -0.918 5.918 19 Si 1.066 2.934 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.289 1.289 23 C -0.151 4.151 24 C -0.129 4.129 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.336 0.664 37 H 0.269 0.731 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.070 0.930 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 -9.778 10.675 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.295 6.295 4 C 0.000 4.000 5 H 0.093 0.907 6 C -0.033 4.033 7 O -0.299 6.299 8 C -0.019 4.019 9 C -0.179 4.179 10 C -0.021 4.021 11 H 0.059 0.941 12 N -0.301 5.301 13 C 0.097 3.903 14 H 0.044 0.956 15 C -0.608 4.608 16 H 0.072 0.928 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.895 3.105 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.216 1.216 23 C -0.190 4.190 24 C -0.187 4.187 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.114 0.886 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.371 -9.002 9.100 12.874 hybrid contribution -1.017 -0.508 1.761 2.096 sum -2.388 -9.510 10.861 14.632 Atomic orbital electron populations 1.21736 0.93860 1.01972 1.03228 1.22511 0.95502 0.84066 0.99955 1.87936 1.20477 1.26206 1.94881 1.22936 0.81240 1.00052 0.95742 0.90741 1.22988 0.81828 1.02001 0.96436 1.87897 1.20965 1.41763 1.79311 1.22711 0.99944 0.86448 0.92778 1.22235 0.95590 1.04199 0.95856 1.21511 0.94832 0.94330 0.91458 0.94144 1.60847 1.36030 1.22001 1.11208 1.19335 0.91491 0.84228 0.95276 0.95623 1.21802 1.53858 0.94957 0.90166 0.92823 1.25686 0.94038 0.92456 1.06424 1.70809 1.46601 1.25117 1.13024 0.83579 0.76451 0.75625 0.74843 1.21007 1.21569 1.21579 1.22220 0.98966 1.01617 0.96236 1.21564 0.96170 0.98180 1.02770 0.92099 0.91575 0.91317 0.93071 0.93792 0.89227 0.92627 0.88638 0.93307 0.90362 0.90035 0.84437 0.91974 0.96070 0.91784 0.95563 0.91140 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.68 6.47 37.16 0.24 0.92 16 3 O -0.38 -5.80 9.29 -35.23 -0.33 -6.13 16 4 C 0.06 0.91 2.35 -26.60 -0.06 0.85 16 5 H 0.07 1.17 7.79 -51.93 -0.40 0.77 16 6 C 0.05 0.62 6.47 37.20 0.24 0.86 16 7 O -0.38 -5.60 10.77 -35.23 -0.38 -5.98 16 8 C 0.06 0.81 6.84 37.21 0.25 1.07 16 9 C -0.14 -2.36 5.55 -26.59 -0.15 -2.51 16 10 C 0.09 1.63 2.13 -67.53 -0.14 1.49 16 11 H 0.04 0.80 6.76 -51.93 -0.35 0.45 16 12 N -0.67 -14.31 6.02 -100.76 -0.61 -14.92 16 13 C 0.21 5.04 1.82 -68.86 -0.13 4.91 16 14 H 0.03 0.69 6.35 -51.93 -0.33 0.36 16 15 C -0.57 -15.59 7.18 -34.44 -0.25 -15.84 16 16 H 0.05 1.51 7.82 -52.49 -0.41 1.10 16 17 C 0.02 0.48 5.28 -17.82 -0.09 0.39 16 18 N -0.92 -27.16 13.21 55.43 0.73 -26.43 16 19 Si 1.07 25.19 29.91 -169.99 -5.08 20.11 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.15 -3.52 5.44 -26.73 -0.15 -3.66 16 24 C -0.13 -2.80 9.38 37.16 0.35 -2.45 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.62 8.09 -51.93 -0.42 0.20 16 29 H 0.04 0.46 7.96 -51.93 -0.41 0.04 16 30 H 0.09 1.05 7.96 -51.93 -0.41 0.63 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 36 H 0.34 7.15 5.85 -39.29 -0.23 6.92 16 37 H 0.27 7.89 5.62 -40.82 -0.23 7.66 16 38 H 0.02 0.46 6.97 -51.93 -0.36 0.10 16 39 H 0.06 1.64 6.18 -51.93 -0.32 1.32 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 1.66 6.88 -51.93 -0.36 1.30 16 42 H 0.04 0.73 6.68 -51.93 -0.35 0.38 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -29.61 322.86 -7.43 -37.05 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.14 Total: 6.61 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 0.50 Total: -15.18 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.13 Total: -41.35 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.71 Total: -12.11 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.61 -7.43 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686602379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.045 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds