Wall clock time and date at job start Mon Mar 30 2020 05:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46921 * 2 1 4 4 C 1.42898 * 114.00087 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.57151 * 29.83989 * 4 3 2 6 6 C 1.53089 * 109.51873 * 269.68485 * 4 3 2 7 7 O 1.42907 * 109.41357 * 182.48635 * 6 4 3 8 8 C 1.42903 * 114.09787 * 61.15404 * 7 6 4 9 9 C 1.53093 * 109.41683 * 298.84350 * 8 7 6 10 10 C 1.53169 * 109.52483 * 149.99773 * 4 3 2 11 11 H 1.09002 * 109.61548 * 56.97209 * 10 4 3 12 12 N 1.46906 * 109.54346 * 296.75137 * 10 4 3 13 13 C 1.46900 * 110.99889 * 160.22203 * 12 10 4 14 14 H 1.08999 * 109.47595 * 39.77814 * 13 12 10 15 15 C 1.50699 * 109.47258 * 159.77745 * 13 12 10 16 16 H 1.08002 * 119.99600 * 5.73056 * 15 13 12 17 17 C 1.37869 * 120.00438 * 185.72436 * 15 13 12 18 18 N 1.31515 * 120.00006 * 5.52155 * 17 15 13 19 19 Si 1.86799 * 120.00199 * 185.51848 * 17 15 13 20 20 H 1.48507 * 109.47245 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47192 * 299.99979 * 19 17 15 22 22 H 1.48500 * 109.47199 * 60.00403 * 19 17 15 23 23 C 1.53001 * 109.47323 * 279.77738 * 13 12 10 24 24 C 1.53001 * 109.47205 * 295.06697 * 23 13 12 25 25 H 1.09004 * 109.47275 * 300.00157 * 1 2 3 26 26 H 1.08995 * 109.47412 * 59.99915 * 1 2 3 27 27 H 1.08999 * 109.47293 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46915 * 240.00407 * 2 1 3 29 29 H 1.08998 * 109.47412 * 119.99310 * 2 1 3 30 30 H 1.08997 * 109.48587 * 62.50234 * 6 4 3 31 31 H 1.08996 * 109.48110 * 302.46392 * 6 4 3 32 32 H 1.09003 * 109.47639 * 178.85948 * 8 7 6 33 33 H 1.08999 * 109.48814 * 58.83632 * 8 7 6 34 34 H 1.08999 * 109.52000 * 297.70450 * 9 8 7 35 35 H 1.08996 * 109.52095 * 177.51576 * 9 8 7 36 36 H 1.00900 * 110.99943 * 36.27378 * 12 10 4 37 37 H 0.96999 * 119.99804 * 355.14897 * 18 17 15 38 38 H 1.09000 * 109.47135 * 55.06362 * 23 13 12 39 39 H 1.08998 * 109.47291 * 175.06765 * 23 13 12 40 40 H 1.08999 * 109.47016 * 185.01038 * 24 23 13 41 41 H 1.08998 * 109.46852 * 305.00473 * 24 23 13 42 42 H 1.08999 * 109.47111 * 65.00448 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4603 -0.0006 5 1 3.8650 0.6011 -0.5119 6 6 3.9407 1.5084 1.4421 7 8 5.3595 1.6795 1.4390 8 6 5.7999 2.8893 0.8189 9 6 5.3647 2.8966 -0.6488 10 6 3.8420 2.7471 -0.7224 11 1 3.3680 3.6033 -0.2426 12 7 3.4226 2.6773 -2.1286 13 6 3.3637 4.0174 -2.7275 14 1 4.2072 4.6106 -2.3743 15 6 3.4259 3.8999 -4.2286 16 1 3.4081 2.9260 -4.6952 17 6 3.5053 5.0355 -5.0063 18 7 3.6363 6.2141 -4.4377 19 14 3.4270 4.9002 -6.8678 20 1 3.5339 6.2546 -7.4675 21 1 4.5491 4.0558 -7.3504 22 1 2.1362 4.2828 -7.2653 23 6 2.0554 4.6997 -2.3231 24 6 0.8743 3.9344 -2.9233 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.6880 0.5767 1.9483 31 1 3.4750 2.3440 1.9645 32 1 6.8866 2.9523 0.8762 33 1 5.3587 3.7430 1.3332 34 1 5.8380 2.0665 -1.1732 35 1 5.6612 3.8377 -1.1119 36 1 2.5372 2.2018 -2.2186 37 1 3.6064 6.2923 -3.4713 38 1 1.9697 4.7062 -1.2365 39 1 2.0504 5.7246 -2.6941 40 1 -0.0512 4.4694 -2.7103 41 1 1.0058 3.8512 -4.0021 42 1 0.8269 2.9375 -2.4851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686602379.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:46 Heat of formation + Delta-G solvation = -127.128514 kcal Electronic energy + Delta-G solvation = -20946.625419 eV Core-core repulsion = 17925.323695 eV Total energy + Delta-G solvation = -3021.301724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.00941 -38.50688 -38.35915 -35.20969 -33.25914 -32.49239 -31.19339 -30.30281 -27.72953 -25.69678 -24.66939 -24.49604 -23.50535 -21.74018 -20.87654 -18.90169 -18.07953 -17.49713 -17.37770 -16.48316 -16.13271 -15.90763 -15.62771 -15.52734 -15.09830 -14.92419 -14.54314 -14.19735 -14.02631 -13.55136 -13.30179 -13.20614 -13.10472 -12.68191 -12.59337 -12.48064 -12.25869 -12.08969 -11.97854 -11.93106 -11.83296 -11.63165 -11.39745 -11.02554 -10.68156 -10.36684 -10.22649 -9.08409 -8.50483 -6.20621 1.54815 1.61829 1.80805 2.43584 2.59721 2.95256 3.25960 3.35618 3.63130 3.78316 3.99734 4.05174 4.16090 4.16957 4.30315 4.32515 4.34473 4.42728 4.47367 4.50535 4.54949 4.62454 4.67109 4.80845 4.84141 4.94070 4.99982 5.03972 5.12700 5.18924 5.21017 5.26757 5.38772 5.51511 5.95502 5.98304 6.21694 6.28535 6.54011 6.74610 6.80046 7.55648 8.85997 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.006672 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.684239 B = 4195.791428 C = 5064.294144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.068 3.932 5 H 0.072 0.928 6 C 0.049 3.951 7 O -0.384 6.384 8 C 0.065 3.935 9 C -0.137 4.137 10 C 0.086 3.914 11 H 0.025 0.975 12 N -0.672 5.672 13 C 0.212 3.788 14 H -0.004 1.004 15 C -0.574 4.574 16 H 0.044 0.956 17 C -0.028 4.028 18 N -0.942 5.942 19 Si 1.108 2.892 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.271 1.271 23 C -0.142 4.142 24 C -0.119 4.119 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.336 0.664 37 H 0.258 0.742 38 H 0.031 0.969 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.048 0.952 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.638 -11.461 11.532 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.315 6.315 4 C 0.009 3.991 5 H 0.090 0.910 6 C -0.029 4.029 7 O -0.303 6.303 8 C -0.012 4.012 9 C -0.175 4.175 10 C -0.024 4.024 11 H 0.043 0.957 12 N -0.303 5.303 13 C 0.103 3.897 14 H 0.014 0.986 15 C -0.613 4.613 16 H 0.062 0.938 17 C -0.226 4.226 18 N -0.581 5.581 19 Si 0.931 3.069 20 H -0.213 1.213 21 H -0.202 1.202 22 H -0.197 1.197 23 C -0.182 4.182 24 C -0.177 4.177 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.909 -10.712 9.980 14.765 hybrid contribution -0.863 -0.030 1.543 1.768 sum -2.772 -10.742 11.523 15.996 Atomic orbital electron populations 1.21755 0.92754 1.03461 1.02514 1.22762 0.96415 0.82616 1.00951 1.87912 1.20070 1.28481 1.95046 1.22774 0.81753 0.97923 0.96607 0.90966 1.23058 0.81234 1.03519 0.95091 1.87902 1.21564 1.41854 1.78996 1.22715 1.01389 0.86695 0.90389 1.22181 0.94677 1.02579 0.98087 1.21621 0.95535 0.95636 0.89636 0.95745 1.60749 1.35994 1.20049 1.13555 1.19074 0.90969 0.85548 0.94138 0.98589 1.22050 1.53089 0.94384 0.91783 0.93783 1.26961 0.93334 0.92065 1.10244 1.70915 1.48651 1.26045 1.12470 0.83031 0.77656 0.75727 0.70436 1.21321 1.20180 1.19680 1.22073 0.99150 1.00129 0.96799 1.21446 0.96158 0.98943 1.01126 0.91948 0.93105 0.88758 0.93284 0.91541 0.86530 0.92408 0.86326 0.92567 0.91091 0.92346 0.84400 0.93126 0.95068 0.94431 0.93494 0.93281 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 10.28 71.98 0.74 -2.03 16 2 C 0.05 1.06 6.47 71.98 0.47 1.52 16 3 O -0.40 -11.56 9.29 -148.98 -1.38 -12.94 16 4 C 0.07 2.01 2.35 30.68 0.07 2.08 16 5 H 0.07 2.16 7.79 -2.38 -0.02 2.14 16 6 C 0.05 1.20 6.47 72.01 0.47 1.67 16 7 O -0.38 -10.38 10.77 -148.98 -1.60 -11.99 16 8 C 0.06 1.72 6.84 72.01 0.49 2.21 16 9 C -0.14 -4.63 5.55 30.68 0.17 -4.46 16 10 C 0.09 3.14 2.13 45.03 0.10 3.24 16 11 H 0.02 0.97 6.76 -2.39 -0.02 0.96 16 12 N -0.67 -29.06 6.02 -472.70 -2.84 -31.90 16 13 C 0.21 10.69 1.82 44.17 0.08 10.77 16 14 H 0.00 -0.21 6.35 -2.39 -0.02 -0.22 16 15 C -0.57 -32.02 7.18 25.60 0.18 -31.83 16 16 H 0.04 2.50 7.82 -2.91 -0.02 2.47 16 17 C -0.03 -1.60 5.28 84.65 0.45 -1.16 16 18 N -0.94 -57.08 13.21 21.44 0.28 -56.80 16 19 Si 1.11 50.74 29.91 68.60 2.05 52.79 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 C -0.14 -6.72 5.44 30.59 0.17 -6.55 16 24 C -0.12 -5.09 9.38 71.98 0.68 -4.42 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.08 8.09 -2.39 -0.02 1.07 16 29 H 0.07 1.16 7.96 -2.39 -0.02 1.14 16 30 H 0.12 2.29 7.96 -2.39 -0.02 2.27 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.06 2.22 7.12 -2.39 -0.02 2.20 16 36 H 0.34 14.28 5.85 -89.69 -0.52 13.75 16 37 H 0.26 15.77 5.62 -92.71 -0.52 15.25 16 38 H 0.03 1.38 6.97 -2.39 -0.02 1.37 16 39 H 0.04 1.97 6.18 -2.39 -0.01 1.95 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 2.29 6.88 -2.39 -0.02 2.28 16 42 H 0.05 1.98 6.68 -2.39 -0.02 1.97 16 Total: -1.00 -64.08 322.86 1.27 -62.82 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.71 Total: 26.97 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 4.06 Total: -28.96 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -2.56 Total: -88.70 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -2.99 Total: -24.93 kcal Atomic # 14 Polarization: 50.74 SS G_CDS: 2.05 Total: 52.79 kcal Total: -64.08 1.27 -62.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686602379.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.312 kcal (2) G-P(sol) polarization free energy of solvation -64.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds