Wall clock time and date at job start Mon Mar 30 2020 04:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99985 * 2 1 4 4 C 1.52997 * 109.47401 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47377 * 64.99497 * 4 3 2 6 6 C 1.46505 * 119.99899 * 90.00269 * 5 4 3 7 7 C 1.50703 * 109.47064 * 270.00279 * 6 5 4 8 8 H 1.07996 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00001 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99923 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00006 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47093 * 90.00088 * 11 9 7 13 13 H 1.48495 * 109.46891 * 210.00496 * 11 9 7 14 14 H 1.48504 * 109.47189 * 330.00185 * 11 9 7 15 15 C 1.34773 * 120.00646 * 270.00434 * 5 4 3 16 16 O 1.21282 * 120.00692 * 179.97438 * 15 5 4 17 17 C 1.50705 * 119.99759 * 0.02562 * 15 5 4 18 18 H 1.08997 * 115.54906 * 34.27177 * 17 15 5 19 19 C 1.53000 * 117.49837 * 248.60889 * 17 15 5 20 20 C 1.52997 * 60.00033 * 252.50640 * 19 17 15 21 21 H 1.09000 * 117.49741 * 107.48682 * 20 19 17 22 22 O 1.42904 * 117.49844 * 252.50836 * 20 19 17 23 23 C 1.42901 * 113.99844 * 218.61998 * 22 20 19 24 24 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46939 * 300.00070 * 1 2 3 26 26 H 1.09000 * 109.46916 * 60.00482 * 1 2 3 27 27 H 1.09004 * 109.47531 * 59.99515 * 3 2 1 28 28 H 1.08999 * 109.47120 * 300.00062 * 3 2 1 29 29 H 1.09006 * 109.46817 * 304.99787 * 4 3 2 30 30 H 1.08996 * 109.47652 * 185.00037 * 4 3 2 31 31 H 1.09002 * 109.47068 * 30.00248 * 6 5 4 32 32 H 1.09001 * 109.47372 * 150.00336 * 6 5 4 33 33 H 0.97000 * 119.99684 * 180.02562 * 10 9 7 34 34 H 1.09005 * 117.50055 * 0.02562 * 19 17 15 35 35 H 1.08998 * 117.50115 * 145.01119 * 19 17 15 36 36 H 1.09004 * 109.46958 * 60.00420 * 23 22 20 37 37 H 1.08997 * 109.47088 * 179.97438 * 23 22 20 38 38 H 1.08996 * 109.47348 * 300.00278 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2864 1.4006 -2.4148 7 6 3.0416 1.5936 -3.2420 8 1 2.1121 1.1386 -2.9331 9 6 3.0895 2.3503 -4.3935 10 7 2.0031 2.5191 -5.1151 11 14 4.6974 3.1368 -4.9280 12 1 5.4381 2.1991 -5.8097 13 1 4.4123 4.3919 -5.6686 14 1 5.5200 3.4446 -3.7306 15 6 4.0949 -0.7755 -1.3355 16 8 4.4590 -1.2891 -2.3721 17 6 3.7747 -1.6358 -0.1403 18 1 2.9655 -1.2756 0.4950 19 6 4.9376 -2.3609 0.5401 20 6 3.9294 -3.1498 -0.2977 21 1 4.2627 -3.5236 -1.2658 22 8 3.0016 -3.9839 0.3992 23 6 2.7358 -5.2279 -0.2518 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5682 0.8410 30 1 3.9785 2.1765 0.0889 31 1 4.6523 2.3703 -2.0772 32 1 5.0520 0.9135 -3.0187 33 1 2.0370 3.0512 -5.9255 34 1 5.9343 -2.2153 0.1235 35 1 4.8933 -2.4779 1.6229 36 1 3.6635 -5.7916 -0.3508 37 1 2.0234 -5.8027 0.3399 38 1 2.3183 -5.0387 -1.2406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689940177.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:03 Heat of formation + Delta-G solvation = -87.294854 kcal Electronic energy + Delta-G solvation = -20255.739378 eV Core-core repulsion = 17100.331877 eV Total energy + Delta-G solvation = -3155.407501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.58981 -37.90277 -37.24893 -35.03623 -34.36339 -32.52041 -29.67748 -27.91857 -26.59879 -25.94501 -24.06241 -22.43832 -21.96141 -21.32074 -18.30108 -17.36534 -16.89982 -16.29848 -15.81840 -15.36612 -15.17013 -15.00212 -14.82328 -14.53310 -14.01946 -13.54519 -13.18444 -12.67681 -12.39929 -12.27186 -12.02602 -11.91000 -11.61322 -11.43235 -11.26682 -11.24266 -10.80206 -10.71702 -10.51372 -10.21212 -10.10222 -9.52359 -9.21640 -9.06787 -8.83541 -8.56802 -7.67635 -6.06888 -4.04821 3.17442 3.29419 3.35378 3.37553 3.53197 3.98367 4.19879 4.27376 4.40798 5.04809 5.10772 5.23236 5.25526 5.38303 5.44603 5.46531 5.54818 5.58990 5.63466 5.66986 5.75141 5.78048 5.82756 5.91777 5.96718 6.02681 6.39820 6.45363 6.71163 6.96997 7.30464 7.36196 7.58241 7.63992 8.31319 8.50294 8.97887 9.08104 9.54020 11.06331 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.020768 B = 0.006709 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.920593 B = 4172.363086 C = 4642.353496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.384 6.384 3 C 0.036 3.964 4 C 0.120 3.880 5 N -0.587 5.587 6 C 0.214 3.786 7 C -0.524 4.524 8 H 0.077 0.923 9 C 0.071 3.929 10 N -0.899 5.899 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.550 3.450 16 O -0.547 6.547 17 C -0.180 4.180 18 H 0.146 0.854 19 C -0.167 4.167 20 C 0.045 3.955 21 H 0.121 0.879 22 O -0.359 6.359 23 C 0.033 3.967 24 H 0.079 0.921 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.029 0.971 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -6.911 13.971 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.303 6.303 3 C -0.041 4.041 4 C -0.005 4.005 5 N -0.317 5.317 6 C 0.093 3.907 7 C -0.562 4.562 8 H 0.095 0.905 9 C -0.131 4.131 10 N -0.537 5.537 11 Si 0.702 3.298 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.191 1.191 15 C 0.337 3.663 16 O -0.426 6.426 17 C -0.201 4.201 18 H 0.163 0.837 19 C -0.205 4.205 20 C -0.013 4.013 21 H 0.138 0.862 22 O -0.277 6.277 23 C -0.063 4.063 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.830 -7.175 13.412 15.320 hybrid contribution 0.357 0.758 -0.639 1.054 sum 2.187 -6.417 12.772 14.460 Atomic orbital electron populations 1.22647 0.81667 1.02116 0.99658 1.87813 1.19255 1.27845 1.95374 1.23167 0.94552 0.85244 1.01186 1.21508 0.92522 0.99289 0.87158 1.47702 1.65344 1.05703 1.12991 1.19703 0.97661 0.89269 0.84018 1.21378 0.95850 1.31568 1.07450 0.90456 1.24871 0.96192 0.96061 0.95975 1.69898 1.27769 1.40299 1.15768 0.86869 0.84423 0.79086 0.79398 1.19988 1.21175 1.19093 1.19290 0.77010 0.82284 0.87673 1.90635 1.47907 1.72857 1.31177 1.22931 1.02614 0.93986 1.00572 0.83698 1.23408 0.94599 1.02611 0.99836 1.22635 0.93771 0.88517 0.96426 0.86176 1.87781 1.62780 1.29394 1.47734 1.22791 1.00236 0.85271 0.98050 0.90259 0.94841 0.93810 0.93564 0.90585 0.90545 0.89273 0.95283 0.94573 0.92655 0.88034 0.87779 0.93966 0.89682 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 11.01 101.05 1.11 1.64 16 2 O -0.38 -6.69 7.64 -35.23 -0.27 -6.96 16 3 C 0.04 0.59 6.28 37.16 0.23 0.83 16 4 C 0.12 1.94 5.75 -4.05 -0.02 1.91 16 5 N -0.59 -12.41 2.44 -175.06 -0.43 -12.84 16 6 C 0.21 5.25 4.27 -5.19 -0.02 5.23 16 7 C -0.52 -14.97 9.37 -34.44 -0.32 -15.29 16 8 H 0.08 2.44 7.48 -52.49 -0.39 2.04 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 11 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 15 C 0.55 11.95 7.16 -10.98 -0.08 11.87 16 16 O -0.55 -14.02 15.84 5.56 0.09 -13.93 16 17 C -0.18 -3.12 4.38 -91.77 -0.40 -3.52 16 18 H 0.15 2.49 4.95 -51.93 -0.26 2.24 16 19 C -0.17 -2.34 10.18 -26.73 -0.27 -2.61 16 20 C 0.05 0.72 5.96 -26.73 -0.16 0.56 16 21 H 0.12 2.01 7.45 -51.93 -0.39 1.62 16 22 O -0.36 -5.43 10.96 -35.23 -0.39 -5.81 16 23 C 0.03 0.38 10.88 101.05 1.10 1.48 16 24 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.51 6.95 -51.93 -0.36 1.15 16 29 H 0.08 1.05 6.64 -51.93 -0.34 0.71 16 30 H 0.09 1.26 7.89 -51.93 -0.41 0.85 16 31 H 0.03 0.67 6.95 -51.93 -0.36 0.31 16 32 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 33 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 34 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -34.45 316.52 -4.89 -39.35 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.84 Total: 1.36 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 1.07 Total: 4.05 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.35 Total: -39.71 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.57 Total: -26.70 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.45 -4.89 -39.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689940177.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.949 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds