Wall clock time and date at job start Mon Mar 30 2020 04:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99985 * 2 1 4 4 C 1.52997 * 109.47401 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47377 * 64.99497 * 4 3 2 6 6 C 1.46505 * 119.99899 * 90.00269 * 5 4 3 7 7 C 1.50703 * 109.47064 * 270.00279 * 6 5 4 8 8 H 1.07996 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00001 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99923 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00006 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.47093 * 90.00088 * 11 9 7 13 13 H 1.48495 * 109.46891 * 210.00496 * 11 9 7 14 14 H 1.48504 * 109.47189 * 330.00185 * 11 9 7 15 15 C 1.34773 * 120.00646 * 270.00434 * 5 4 3 16 16 O 1.21282 * 120.00692 * 179.97438 * 15 5 4 17 17 C 1.50705 * 119.99759 * 0.02562 * 15 5 4 18 18 H 1.08997 * 115.54906 * 34.27177 * 17 15 5 19 19 C 1.53000 * 117.49837 * 248.60889 * 17 15 5 20 20 C 1.52997 * 60.00033 * 252.50640 * 19 17 15 21 21 H 1.09000 * 117.49741 * 107.48682 * 20 19 17 22 22 O 1.42904 * 117.49844 * 252.50836 * 20 19 17 23 23 C 1.42901 * 113.99844 * 218.61998 * 22 20 19 24 24 H 1.09003 * 109.46828 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46939 * 300.00070 * 1 2 3 26 26 H 1.09000 * 109.46916 * 60.00482 * 1 2 3 27 27 H 1.09004 * 109.47531 * 59.99515 * 3 2 1 28 28 H 1.08999 * 109.47120 * 300.00062 * 3 2 1 29 29 H 1.09006 * 109.46817 * 304.99787 * 4 3 2 30 30 H 1.08996 * 109.47652 * 185.00037 * 4 3 2 31 31 H 1.09002 * 109.47068 * 30.00248 * 6 5 4 32 32 H 1.09001 * 109.47372 * 150.00336 * 6 5 4 33 33 H 0.97000 * 119.99684 * 180.02562 * 10 9 7 34 34 H 1.09005 * 117.50055 * 0.02562 * 19 17 15 35 35 H 1.08998 * 117.50115 * 145.01119 * 19 17 15 36 36 H 1.09004 * 109.46958 * 60.00420 * 23 22 20 37 37 H 1.08997 * 109.47088 * 179.97438 * 23 22 20 38 38 H 1.08996 * 109.47348 * 300.00278 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2526 6 6 4.2864 1.4006 -2.4148 7 6 3.0416 1.5936 -3.2420 8 1 2.1121 1.1386 -2.9331 9 6 3.0895 2.3503 -4.3935 10 7 2.0031 2.5191 -5.1151 11 14 4.6974 3.1368 -4.9280 12 1 5.4381 2.1991 -5.8097 13 1 4.4123 4.3919 -5.6686 14 1 5.5200 3.4446 -3.7306 15 6 4.0949 -0.7755 -1.3355 16 8 4.4590 -1.2891 -2.3721 17 6 3.7747 -1.6358 -0.1403 18 1 2.9655 -1.2756 0.4950 19 6 4.9376 -2.3609 0.5401 20 6 3.9294 -3.1498 -0.2977 21 1 4.2627 -3.5236 -1.2658 22 8 3.0016 -3.9839 0.3992 23 6 2.7358 -5.2279 -0.2518 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8514 0.5682 0.8410 30 1 3.9785 2.1765 0.0889 31 1 4.6523 2.3703 -2.0772 32 1 5.0520 0.9135 -3.0187 33 1 2.0370 3.0512 -5.9255 34 1 5.9343 -2.2153 0.1235 35 1 4.8933 -2.4779 1.6229 36 1 3.6635 -5.7916 -0.3508 37 1 2.0234 -5.8027 0.3399 38 1 2.3183 -5.0387 -1.2406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689940177.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:03 Heat of formation + Delta-G solvation = -112.884807 kcal Electronic energy + Delta-G solvation = -20256.849042 eV Core-core repulsion = 17100.331877 eV Total energy + Delta-G solvation = -3156.517165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12279 -39.15027 -38.62970 -36.64721 -35.70175 -34.66004 -31.31887 -29.69566 -27.60001 -27.18796 -25.76784 -23.89495 -23.26843 -22.89386 -19.84321 -19.09344 -18.69770 -17.70983 -17.14496 -16.84171 -16.61186 -16.41207 -16.18322 -15.90991 -15.46159 -15.18027 -14.80460 -14.38838 -13.89414 -13.61918 -13.51013 -13.38326 -13.21450 -12.89230 -12.61518 -12.39921 -12.36989 -12.26279 -12.02559 -11.94066 -11.66072 -11.48937 -10.82052 -10.66309 -10.50474 -10.14540 -9.42374 -8.31411 -6.35464 1.32802 1.37346 1.45342 1.62444 2.18017 2.32219 2.67046 2.91573 2.98231 3.02710 3.71484 3.84966 4.11841 4.17525 4.23347 4.27768 4.45370 4.51571 4.54004 4.57567 4.60484 4.64647 4.71089 4.78384 4.82052 4.83409 4.88431 4.95585 5.05484 5.20360 5.47462 5.64467 6.19170 6.26022 6.31685 6.66219 6.69606 7.23642 7.43863 8.85427 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.020768 B = 0.006709 C = 0.006030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.920593 B = 4172.363086 C = 4642.353496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.403 6.403 3 C 0.039 3.961 4 C 0.112 3.888 5 N -0.592 5.592 6 C 0.221 3.779 7 C -0.526 4.526 8 H 0.028 0.972 9 C 0.009 3.991 10 N -0.948 5.948 11 Si 0.947 3.053 12 H -0.279 1.279 13 H -0.277 1.277 14 H -0.234 1.234 15 C 0.540 3.460 16 O -0.601 6.601 17 C -0.193 4.193 18 H 0.151 0.849 19 C -0.130 4.130 20 C 0.038 3.962 21 H 0.105 0.895 22 O -0.370 6.370 23 C 0.026 3.974 24 H 0.090 0.910 25 H 0.066 0.934 26 H 0.017 0.983 27 H 0.089 0.911 28 H 0.030 0.970 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.267 0.733 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.352 -6.752 16.692 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.323 6.323 3 C -0.038 4.038 4 C -0.010 4.010 5 N -0.321 5.321 6 C 0.099 3.901 7 C -0.565 4.565 8 H 0.047 0.953 9 C -0.189 4.189 10 N -0.588 5.588 11 Si 0.770 3.230 12 H -0.205 1.205 13 H -0.202 1.202 14 H -0.157 1.157 15 C 0.330 3.670 16 O -0.483 6.483 17 C -0.214 4.214 18 H 0.168 0.832 19 C -0.167 4.167 20 C -0.021 4.021 21 H 0.122 0.878 22 O -0.288 6.288 23 C -0.070 4.070 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.154 0.846 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.494 -7.007 16.195 17.989 hybrid contribution -0.310 0.616 -1.467 1.621 sum 3.184 -6.391 14.728 16.368 Atomic orbital electron populations 1.22763 0.80573 1.03010 0.99940 1.87779 1.20586 1.28475 1.95455 1.23140 0.94886 0.84911 1.00913 1.21930 0.92280 1.01041 0.85781 1.47802 1.64984 1.05681 1.13615 1.19432 0.94988 0.90770 0.84924 1.21546 0.95750 1.30837 1.08335 0.95318 1.25860 1.00305 0.96804 0.95917 1.70060 1.30550 1.41666 1.16554 0.85730 0.79467 0.77906 0.79916 1.20536 1.20210 1.15679 1.20112 0.75814 0.82702 0.88376 1.90595 1.50374 1.73864 1.33460 1.22780 1.04983 0.94123 0.99494 0.83202 1.23520 0.93483 0.98483 1.01212 1.22606 0.94885 0.87823 0.96821 0.87753 1.87753 1.62683 1.30476 1.47878 1.23028 1.01732 0.84346 0.97911 0.89167 0.91599 0.96383 0.89326 0.95192 0.87184 0.86771 0.92591 0.96389 0.92453 0.87395 0.84593 0.92354 0.87100 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.40 -13.87 7.64 -148.98 -1.14 -15.01 16 3 C 0.04 1.24 6.28 71.98 0.45 1.69 16 4 C 0.11 3.38 5.75 86.38 0.50 3.87 16 5 N -0.59 -24.80 2.44 -826.15 -2.02 -26.81 16 6 C 0.22 10.82 4.27 85.63 0.37 11.19 16 7 C -0.53 -31.16 9.37 25.60 0.24 -30.92 16 8 H 0.03 1.93 7.48 -2.91 -0.02 1.90 16 9 C 0.01 0.51 5.47 84.65 0.46 0.97 16 10 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 11 Si 0.95 44.59 27.47 68.60 1.88 46.47 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 14 H -0.23 -9.71 6.54 99.48 0.65 -9.06 16 15 C 0.54 23.58 7.16 87.66 0.63 24.21 16 16 O -0.60 -31.76 15.84 -3.04 -0.05 -31.81 16 17 C -0.19 -6.43 4.38 -11.54 -0.05 -6.48 16 18 H 0.15 4.86 4.95 -2.39 -0.01 4.85 16 19 C -0.13 -3.24 10.18 30.59 0.31 -2.93 16 20 C 0.04 1.16 5.96 30.59 0.18 1.34 16 21 H 0.10 3.53 7.45 -2.39 -0.02 3.51 16 22 O -0.37 -10.52 10.96 -148.98 -1.63 -12.16 16 23 C 0.03 0.55 10.88 113.37 1.23 1.78 16 24 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.03 1.23 6.95 -2.39 -0.02 1.21 16 29 H 0.11 2.62 6.64 -2.38 -0.02 2.60 16 30 H 0.11 2.85 7.89 -2.39 -0.02 2.83 16 31 H 0.06 2.44 6.95 -2.39 -0.02 2.42 16 32 H 0.02 0.95 6.85 -2.39 -0.02 0.93 16 33 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 34 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -79.50 316.52 3.90 -75.60 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.98 Total: 16.99 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 5.57 Total: 6.95 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -1.72 Total: -87.04 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -2.82 Total: -58.98 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -79.50 3.90 -75.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689940177.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.285 kcal (2) G-P(sol) polarization free energy of solvation -79.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds