Wall clock time and date at job start Mon Mar 30 2020 04:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99447 * 2 1 4 4 C 1.52998 * 109.46684 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47132 * 65.00231 * 4 3 2 6 6 C 1.46502 * 119.99984 * 269.99694 * 5 4 3 7 7 C 1.50690 * 109.47135 * 269.99835 * 6 5 4 8 8 H 1.08002 * 120.00142 * 0.02562 * 7 6 5 9 9 C 1.37887 * 120.00004 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99655 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00255 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47153 * 59.99941 * 11 9 7 13 13 H 1.48497 * 109.47345 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47082 * 300.00392 * 11 9 7 15 15 C 1.34778 * 119.99804 * 89.99808 * 5 4 3 16 16 O 1.21280 * 119.99636 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00145 * 0.02562 * 15 5 4 18 18 H 1.09002 * 115.54932 * 325.58291 * 17 15 5 19 19 C 1.53002 * 117.49992 * 111.25454 * 17 15 5 20 20 C 1.53000 * 117.50034 * 179.91227 * 17 15 5 21 21 H 1.09008 * 117.49673 * 359.97438 * 20 17 15 22 22 O 1.42903 * 117.50143 * 144.99549 * 20 17 15 23 23 C 1.42898 * 114.00031 * 210.00308 * 22 20 17 24 24 H 1.08993 * 109.47237 * 59.99646 * 1 2 3 25 25 H 1.09007 * 109.46769 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47206 * 299.99362 * 1 2 3 27 27 H 1.08997 * 109.46868 * 60.00871 * 3 2 1 28 28 H 1.08997 * 109.47273 * 300.00100 * 3 2 1 29 29 H 1.08998 * 109.47555 * 305.00387 * 4 3 2 30 30 H 1.08998 * 109.47355 * 185.00140 * 4 3 2 31 31 H 1.09004 * 109.47065 * 30.00242 * 6 5 4 32 32 H 1.08999 * 109.46955 * 149.99685 * 6 5 4 33 33 H 0.97003 * 119.99497 * 180.02562 * 10 9 7 34 34 H 1.09000 * 117.49996 * 215.00670 * 19 17 15 35 35 H 1.08998 * 117.49632 * 359.97438 * 19 17 15 36 36 H 1.09000 * 109.46879 * 299.99905 * 23 22 20 37 37 H 1.08999 * 109.47250 * 60.00308 * 23 22 20 38 38 H 1.08996 * 109.47124 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.1052 -0.8919 -1.3429 7 6 5.5009 -1.2975 -0.9451 8 1 6.2195 -0.5457 -0.6539 9 6 5.8604 -2.6287 -0.9519 10 7 4.9852 -3.5443 -1.3061 11 14 7.5903 -3.1317 -0.4583 12 1 7.8532 -2.6962 0.9370 13 1 7.7213 -4.6081 -0.5485 14 1 8.5715 -2.4904 -1.3701 15 6 4.2614 1.3340 -2.3218 16 8 4.6253 0.8205 -3.3585 17 6 4.1286 2.8322 -2.2290 18 1 3.3186 3.1941 -1.5957 19 6 5.4150 3.6595 -2.2722 20 6 4.4696 3.6503 -3.4761 21 1 4.7904 3.1048 -4.3637 22 8 3.7018 4.8303 -3.7216 23 6 3.5621 5.1553 -5.1061 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8514 0.5683 0.8408 30 1 3.9785 2.1766 0.0889 31 1 3.3853 -1.3629 -0.6735 32 1 3.9119 -1.2112 -2.3669 33 1 5.2380 -4.4808 -1.3105 34 1 5.4513 4.5655 -1.6673 35 1 6.3573 3.1200 -2.3674 36 1 4.5478 5.3163 -5.5427 37 1 3.0650 4.3348 -5.6235 38 1 2.9673 6.0629 -5.2080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689940192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:06 Heat of formation + Delta-G solvation = -91.928187 kcal Electronic energy + Delta-G solvation = -19828.031989 eV Core-core repulsion = 16672.423571 eV Total energy + Delta-G solvation = -3155.608418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.59979 -38.00400 -37.34655 -34.92813 -34.46776 -32.56645 -29.55528 -27.43535 -26.67152 -25.91155 -24.21113 -22.67310 -22.06336 -21.48061 -18.38975 -17.37416 -16.39738 -16.24526 -16.10284 -15.38606 -15.27836 -15.03381 -14.76892 -14.60601 -14.07444 -13.86374 -13.14095 -12.80217 -12.47551 -12.11583 -11.82062 -11.73239 -11.59252 -11.42971 -11.31241 -11.17241 -10.86923 -10.84001 -10.40319 -10.31476 -10.08635 -9.55510 -9.39877 -9.24672 -8.82838 -8.32919 -7.58819 -5.94375 -3.98591 3.14850 3.36922 3.39248 3.41033 3.45334 3.95425 4.10931 4.24032 4.51940 4.93812 4.99914 5.11849 5.21066 5.31080 5.33509 5.39491 5.40642 5.49082 5.55193 5.55723 5.59271 5.66277 5.67920 5.74563 5.85840 5.89508 6.11853 6.29009 7.15901 7.28446 7.44148 7.60053 7.66166 8.03183 8.35167 8.51394 8.98032 9.14992 9.65104 11.13642 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.006744 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.204997 B = 4150.883002 C = 5394.661937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.043 3.957 4 C 0.112 3.888 5 N -0.583 5.583 6 C 0.249 3.751 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.533 3.467 16 O -0.543 6.543 17 C -0.189 4.189 18 H 0.121 0.879 19 C -0.157 4.157 20 C 0.044 3.956 21 H 0.125 0.875 22 O -0.362 6.362 23 C 0.033 3.967 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.262 0.738 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 15.345 0.531 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C -0.035 4.035 4 C -0.012 4.012 5 N -0.313 5.313 6 C 0.131 3.869 7 C -0.565 4.565 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.319 3.681 16 O -0.422 6.422 17 C -0.211 4.211 18 H 0.139 0.861 19 C -0.195 4.195 20 C -0.014 4.014 21 H 0.142 0.858 22 O -0.280 6.280 23 C -0.064 4.064 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.951 14.767 0.115 15.921 hybrid contribution 0.658 -0.195 0.230 0.724 sum -5.292 14.571 0.345 15.506 Atomic orbital electron populations 1.22701 0.82072 1.02575 0.99116 1.88103 1.18716 1.26963 1.95142 1.23135 0.95384 0.85425 0.99571 1.21521 0.91120 0.99172 0.89429 1.48076 1.63769 1.09744 1.09691 1.19326 0.96763 0.71970 0.98883 1.21434 0.97446 0.92209 1.45399 0.92685 1.24916 0.97336 0.96404 0.95397 1.69942 1.34339 1.00975 1.48023 0.86595 0.84816 0.77273 0.78905 1.20306 1.21244 1.20315 1.19333 0.78143 0.86487 0.84100 1.90653 1.47374 1.74579 1.29574 1.22836 1.01686 0.92900 1.03684 0.86091 1.23407 0.93989 1.00939 1.01150 1.22712 0.96868 0.88149 0.93695 0.85793 1.87763 1.72460 1.42588 1.25202 1.22806 1.00812 1.00710 0.82042 0.94602 0.89773 0.94687 0.93053 0.93660 0.88973 0.89828 0.93541 0.94324 0.92806 0.87609 0.87398 0.93725 0.93568 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -6.59 9.53 -35.23 -0.34 -6.92 16 3 C 0.04 0.64 6.13 37.16 0.23 0.87 16 4 C 0.11 1.90 5.45 -4.04 -0.02 1.87 16 5 N -0.58 -12.81 2.42 -175.06 -0.42 -13.24 16 6 C 0.25 6.79 4.98 -5.20 -0.03 6.77 16 7 C -0.53 -15.29 9.39 -34.44 -0.32 -15.62 16 8 H 0.05 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 11 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.53 11.49 7.46 -10.99 -0.08 11.41 16 16 O -0.54 -14.00 15.84 5.56 0.09 -13.91 16 17 C -0.19 -3.06 4.74 -91.77 -0.44 -3.49 16 18 H 0.12 1.71 6.57 -51.93 -0.34 1.37 16 19 C -0.16 -2.19 10.19 -26.69 -0.27 -2.46 16 20 C 0.04 0.66 5.96 -26.70 -0.16 0.50 16 21 H 0.12 1.95 7.45 -51.92 -0.39 1.57 16 22 O -0.36 -4.95 10.96 -35.23 -0.39 -5.34 16 23 C 0.03 0.33 10.88 101.05 1.10 1.43 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 26 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.65 7.58 -51.93 -0.39 0.26 16 29 H 0.09 1.64 8.07 -51.93 -0.42 1.22 16 30 H 0.08 1.14 6.64 -51.93 -0.34 0.80 16 31 H 0.05 1.32 7.11 -51.93 -0.37 0.95 16 32 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 33 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.11 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 324.76 15.07 4.89 4.89 Total: -1.00 -34.86 324.76 -5.41 -40.28 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.99 Total: -0.99 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 1.02 Total: 4.52 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.31 Total: -39.77 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.63 Total: -26.17 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.86 -5.41 -40.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689940192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.650 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds