Wall clock time and date at job start Mon Mar 30 2020 04:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99447 * 2 1 4 4 C 1.52998 * 109.46684 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47132 * 65.00231 * 4 3 2 6 6 C 1.46502 * 119.99984 * 269.99694 * 5 4 3 7 7 C 1.50690 * 109.47135 * 269.99835 * 6 5 4 8 8 H 1.08002 * 120.00142 * 0.02562 * 7 6 5 9 9 C 1.37887 * 120.00004 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99655 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00255 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47153 * 59.99941 * 11 9 7 13 13 H 1.48497 * 109.47345 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47082 * 300.00392 * 11 9 7 15 15 C 1.34778 * 119.99804 * 89.99808 * 5 4 3 16 16 O 1.21280 * 119.99636 * 180.02562 * 15 5 4 17 17 C 1.50697 * 120.00145 * 0.02562 * 15 5 4 18 18 H 1.09002 * 115.54932 * 325.58291 * 17 15 5 19 19 C 1.53002 * 117.49992 * 111.25454 * 17 15 5 20 20 C 1.53000 * 117.50034 * 179.91227 * 17 15 5 21 21 H 1.09008 * 117.49673 * 359.97438 * 20 17 15 22 22 O 1.42903 * 117.50143 * 144.99549 * 20 17 15 23 23 C 1.42898 * 114.00031 * 210.00308 * 22 20 17 24 24 H 1.08993 * 109.47237 * 59.99646 * 1 2 3 25 25 H 1.09007 * 109.46769 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47206 * 299.99362 * 1 2 3 27 27 H 1.08997 * 109.46868 * 60.00871 * 3 2 1 28 28 H 1.08997 * 109.47273 * 300.00100 * 3 2 1 29 29 H 1.08998 * 109.47555 * 305.00387 * 4 3 2 30 30 H 1.08998 * 109.47355 * 185.00140 * 4 3 2 31 31 H 1.09004 * 109.47065 * 30.00242 * 6 5 4 32 32 H 1.08999 * 109.46955 * 149.99685 * 6 5 4 33 33 H 0.97003 * 119.99497 * 180.02562 * 10 9 7 34 34 H 1.09000 * 117.49996 * 215.00670 * 19 17 15 35 35 H 1.08998 * 117.49632 * 359.97438 * 19 17 15 36 36 H 1.09000 * 109.46879 * 299.99905 * 23 22 20 37 37 H 1.08999 * 109.47250 * 60.00308 * 23 22 20 38 38 H 1.08996 * 109.47124 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5646 -1.2528 6 6 4.1052 -0.8919 -1.3429 7 6 5.5009 -1.2975 -0.9451 8 1 6.2195 -0.5457 -0.6539 9 6 5.8604 -2.6287 -0.9519 10 7 4.9852 -3.5443 -1.3061 11 14 7.5903 -3.1317 -0.4583 12 1 7.8532 -2.6962 0.9370 13 1 7.7213 -4.6081 -0.5485 14 1 8.5715 -2.4904 -1.3701 15 6 4.2614 1.3340 -2.3218 16 8 4.6253 0.8205 -3.3585 17 6 4.1286 2.8322 -2.2290 18 1 3.3186 3.1941 -1.5957 19 6 5.4150 3.6595 -2.2722 20 6 4.4696 3.6503 -3.4761 21 1 4.7904 3.1048 -4.3637 22 8 3.7018 4.8303 -3.7216 23 6 3.5621 5.1553 -5.1061 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.6886 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8514 0.5683 0.8408 30 1 3.9785 2.1766 0.0889 31 1 3.3853 -1.3629 -0.6735 32 1 3.9119 -1.2112 -2.3669 33 1 5.2380 -4.4808 -1.3105 34 1 5.4513 4.5655 -1.6673 35 1 6.3573 3.1200 -2.3674 36 1 4.5478 5.3163 -5.5427 37 1 3.0650 4.3348 -5.6235 38 1 2.9673 6.0629 -5.2080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689940192.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:05 Heat of formation + Delta-G solvation = -117.410458 kcal Electronic energy + Delta-G solvation = -19829.136983 eV Core-core repulsion = 16672.423571 eV Total energy + Delta-G solvation = -3156.713412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.12570 -39.20170 -38.65016 -36.58007 -35.77669 -34.70948 -31.12905 -29.26025 -27.59179 -27.09777 -25.97905 -24.20523 -23.31556 -22.93937 -19.92691 -18.72136 -18.57473 -17.60015 -17.34253 -16.83250 -16.58053 -16.48884 -15.99705 -15.96655 -15.62672 -15.35746 -14.63409 -14.30570 -13.85507 -13.65000 -13.32355 -13.21423 -13.02839 -12.84640 -12.70615 -12.57220 -12.35760 -12.28329 -12.16175 -11.96946 -11.71728 -11.57104 -10.69794 -10.61520 -10.54706 -10.20103 -9.42983 -8.18383 -6.33622 1.37102 1.42029 1.49191 1.62019 2.10092 2.40654 2.67460 2.88802 2.98201 3.11154 3.64347 3.76260 4.00142 4.08837 4.18437 4.31295 4.42347 4.43335 4.53338 4.53753 4.54448 4.59986 4.62521 4.81286 4.84028 4.85477 4.94578 4.98584 5.21122 5.28497 5.58929 5.87584 6.10476 6.13989 6.33739 6.73486 6.81386 7.29337 7.46296 8.88878 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.015654 B = 0.006744 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.204997 B = 4150.883002 C = 5394.661937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.418 6.418 3 C 0.045 3.955 4 C 0.106 3.894 5 N -0.589 5.589 6 C 0.271 3.729 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.970 3.030 12 H -0.259 1.259 13 H -0.279 1.279 14 H -0.276 1.276 15 C 0.524 3.476 16 O -0.600 6.600 17 C -0.194 4.194 18 H 0.149 0.851 19 C -0.135 4.135 20 C 0.046 3.954 21 H 0.107 0.893 22 O -0.367 6.367 23 C 0.024 3.976 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.028 0.972 32 H -0.013 1.013 33 H 0.266 0.734 34 H 0.141 0.859 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.722 17.883 1.959 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.337 6.337 3 C -0.033 4.033 4 C -0.017 4.017 5 N -0.318 5.318 6 C 0.149 3.851 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.193 4.193 10 N -0.569 5.569 11 Si 0.794 3.206 12 H -0.184 1.184 13 H -0.204 1.204 14 H -0.202 1.202 15 C 0.313 3.687 16 O -0.483 6.483 17 C -0.215 4.215 18 H 0.167 0.833 19 C -0.172 4.172 20 C -0.012 4.012 21 H 0.125 0.875 22 O -0.285 6.285 23 C -0.072 4.072 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.142 0.858 31 H 0.046 0.954 32 H 0.005 0.995 33 H 0.075 0.925 34 H 0.159 0.841 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.560 17.351 1.579 18.289 hybrid contribution 0.446 -0.959 -0.271 1.092 sum -5.114 16.392 1.307 17.221 Atomic orbital electron populations 1.22858 0.80039 1.03086 1.00817 1.88044 1.21184 1.28985 1.95525 1.23197 0.93510 0.84802 1.01751 1.21883 0.93155 1.00318 0.86337 1.48050 1.63905 1.07831 1.12004 1.18667 0.95728 0.75635 0.95022 1.21722 0.98153 0.92703 1.45669 0.92706 1.25901 1.02007 0.96330 0.95061 1.70083 1.36698 1.01418 1.48749 0.85442 0.78834 0.77120 0.79226 1.18389 1.20398 1.20167 1.20273 0.76610 0.88896 0.82882 1.90614 1.49824 1.76211 1.31619 1.22704 1.04309 0.88661 1.05860 0.83296 1.23510 0.92307 1.00998 1.00388 1.22579 0.97186 0.88387 0.93097 0.87514 1.87746 1.72211 1.41406 1.27169 1.23062 1.01984 1.01648 0.80457 0.93912 0.90065 0.91799 0.88810 0.93170 0.90368 0.85828 0.95373 0.99523 0.92522 0.84069 0.88410 0.92657 0.94060 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.42 -14.80 9.53 -148.98 -1.42 -16.22 16 3 C 0.04 1.24 6.13 71.98 0.44 1.68 16 4 C 0.11 3.44 5.45 86.38 0.47 3.91 16 5 N -0.59 -26.47 2.42 -826.17 -2.00 -28.47 16 6 C 0.27 15.56 4.98 85.63 0.43 15.99 16 7 C -0.54 -32.62 9.39 25.60 0.24 -32.38 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.01 0.34 5.46 84.66 0.46 0.80 16 10 N -0.93 -58.55 13.29 21.45 0.28 -58.26 16 11 Si 0.97 46.07 29.54 68.60 2.03 48.10 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 15 C 0.52 23.02 7.46 87.66 0.65 23.67 16 16 O -0.60 -32.52 15.84 -3.03 -0.05 -32.57 16 17 C -0.19 -5.92 4.74 -11.54 -0.05 -5.98 16 18 H 0.15 3.68 6.57 -2.39 -0.02 3.66 16 19 C -0.13 -3.38 10.19 30.62 0.31 -3.07 16 20 C 0.05 1.32 5.96 30.62 0.18 1.50 16 21 H 0.11 3.40 7.45 -2.38 -0.02 3.38 16 22 O -0.37 -9.07 10.96 -148.98 -1.63 -10.71 16 23 C 0.02 0.44 10.88 113.37 1.23 1.67 16 24 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 26 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.34 7.58 -2.39 -0.02 1.32 16 29 H 0.08 2.76 8.07 -2.39 -0.02 2.74 16 30 H 0.12 2.99 6.64 -2.39 -0.02 2.97 16 31 H 0.03 1.70 7.11 -2.39 -0.02 1.68 16 32 H -0.01 -0.89 7.42 -2.39 -0.02 -0.91 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -80.12 324.76 3.86 -76.26 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 1.03 Total: 12.11 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.62 Total: 9.77 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -1.71 Total: -86.73 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -3.10 Total: -59.50 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -80.12 3.86 -76.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689940192.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.147 kcal (2) G-P(sol) polarization free energy of solvation -80.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds