Wall clock time and date at job start Mon Mar 30 2020 04:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47317 * 55.00691 * 4 3 2 6 6 O 1.42900 * 109.47586 * 295.00029 * 4 3 2 7 7 C 1.42895 * 113.99990 * 150.00096 * 6 4 3 8 8 C 1.50710 * 109.46737 * 175.00089 * 4 3 2 9 9 O 1.21277 * 119.99452 * 115.00444 * 8 4 3 10 10 N 1.34771 * 120.00178 * 294.99927 * 8 4 3 11 11 C 1.47432 * 125.64608 * 0.02632 * 10 8 4 12 12 C 1.54914 * 104.82979 * 204.08777 * 11 10 8 13 13 C 1.55155 * 101.58145 * 322.99209 * 12 11 10 14 14 H 1.08994 * 110.71981 * 277.13631 * 13 12 11 15 15 C 1.50706 * 110.71797 * 154.04167 * 13 12 11 16 16 H 1.08002 * 119.99965 * 241.45200 * 15 13 12 17 17 C 1.37880 * 119.99671 * 61.45189 * 15 13 12 18 18 N 1.31512 * 120.00443 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99694 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46932 * 90.00203 * 19 17 15 21 21 H 1.48498 * 109.47426 * 210.00101 * 19 17 15 22 22 H 1.48503 * 109.47148 * 330.00597 * 19 17 15 23 23 C 1.47019 * 125.65241 * 179.71448 * 10 8 4 24 24 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 25 25 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 26 26 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 28 28 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 29 29 H 1.09001 * 109.47072 * 60.00300 * 7 6 4 30 30 H 1.09004 * 109.46965 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.47596 * 300.00168 * 7 6 4 32 32 H 1.08990 * 110.36907 * 322.93037 * 11 10 8 33 33 H 1.09006 * 110.36273 * 85.25463 * 11 10 8 34 34 H 1.08999 * 110.99737 * 81.06732 * 12 11 10 35 35 H 1.09000 * 111.00253 * 204.88245 * 12 11 10 36 36 H 0.96994 * 119.99977 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.88113 * 298.40423 * 23 10 8 38 38 H 1.09000 * 109.87896 * 59.55861 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8514 0.5683 -0.8410 6 8 3.9649 0.5797 1.2219 7 6 5.1682 -0.1816 1.1017 8 6 4.1480 2.5561 -0.1232 9 8 4.8062 3.0107 0.7884 10 7 3.9644 3.2772 -1.2468 11 6 3.1903 2.8484 -2.4261 12 6 3.7720 3.6711 -3.6028 13 6 4.0577 5.0341 -2.9186 14 1 3.1542 5.6424 -2.8786 15 6 5.1616 5.7690 -3.6346 16 1 6.0767 6.0091 -3.1138 17 6 5.0031 6.1347 -4.9545 18 7 3.8885 5.8428 -5.5886 19 14 6.3710 7.0463 -5.8418 20 1 7.2850 6.0662 -6.4816 21 1 5.7843 7.9284 -6.8823 22 1 7.1314 7.8687 -4.8667 23 6 4.4974 4.6243 -1.4972 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6885 1.8465 -0.8900 28 1 1.6885 1.8463 0.8900 29 1 5.9760 0.4669 0.7626 30 1 5.4267 -0.6080 2.0710 31 1 5.0196 -0.9846 0.3799 32 1 3.3290 1.7820 -2.6036 33 1 2.1333 3.0768 -2.2895 34 1 4.6917 3.2213 -3.9769 35 1 3.0396 3.7807 -4.4025 36 1 3.7772 6.0997 -6.5172 37 1 4.0937 5.3245 -0.7658 38 1 5.5856 4.6093 -1.4376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691103920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:05 Heat of formation + Delta-G solvation = -123.625452 kcal Electronic energy + Delta-G solvation = -19976.129841 eV Core-core repulsion = 16819.146927 eV Total energy + Delta-G solvation = -3156.982914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.00090 -38.04972 -37.33277 -36.33810 -33.18570 -31.41768 -29.85476 -28.44866 -26.85757 -26.20189 -24.94721 -23.64705 -21.94274 -19.94157 -19.01676 -17.47728 -16.73719 -16.50131 -16.46839 -15.71522 -15.47175 -14.96776 -14.77486 -14.59766 -14.18443 -13.74521 -13.13503 -12.76637 -12.61705 -12.54352 -12.13786 -11.82299 -11.49499 -11.36893 -11.28409 -11.07807 -11.01435 -10.82573 -10.54991 -10.33001 -9.88379 -9.78497 -9.55100 -9.07675 -8.99201 -8.53922 -8.08819 -6.15692 -4.19087 2.76399 3.22213 3.24566 3.31864 3.36171 3.70213 3.89806 4.34938 4.80920 4.87036 4.93358 5.18003 5.19442 5.25229 5.30649 5.36804 5.48293 5.52831 5.53335 5.58505 5.73302 5.78823 5.90525 6.12764 6.25853 6.58447 6.73928 6.93354 6.95611 7.00865 7.09472 7.41564 7.64068 7.83168 8.00252 8.22511 8.50765 8.82312 9.46206 10.94013 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.029712 B = 0.005016 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.169025 B = 5581.165945 C = 6175.419603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.067 3.933 4 C 0.082 3.918 5 H 0.092 0.908 6 O -0.354 6.354 7 C 0.032 3.968 8 C 0.500 3.500 9 O -0.534 6.534 10 N -0.607 5.607 11 C 0.085 3.915 12 C -0.107 4.107 13 C 0.044 3.956 14 H 0.040 0.960 15 C -0.516 4.516 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.889 5.889 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.110 3.890 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.262 0.738 37 H 0.050 0.950 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.350 -11.182 6.529 14.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.010 4.010 4 C 0.020 3.980 5 H 0.110 0.890 6 O -0.271 6.271 7 C -0.065 4.065 8 C 0.286 3.714 9 O -0.412 6.412 10 N -0.342 5.342 11 C -0.038 4.038 12 C -0.145 4.145 13 C 0.025 3.975 14 H 0.058 0.942 15 C -0.554 4.554 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.527 5.527 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.011 4.011 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.062 -11.112 7.101 14.125 hybrid contribution 0.653 0.647 -0.878 1.271 sum -4.409 -10.465 6.224 12.949 Atomic orbital electron populations 1.22758 0.80772 1.02770 1.00224 1.87882 1.19826 1.27041 1.95499 1.22582 0.90576 0.85664 1.02210 1.21922 0.93885 0.92461 0.89766 0.89021 1.87967 1.42043 1.67073 1.29978 1.22829 0.86794 0.94331 1.02534 1.20608 0.82040 0.86907 0.81807 1.90681 1.40723 1.71093 1.38660 1.48842 1.51339 1.18726 1.15263 1.22722 0.95101 0.98956 0.86979 1.22754 1.00590 0.96220 0.94973 1.19724 0.97436 0.92872 0.87490 0.94211 1.21022 1.01369 1.36775 0.96237 0.92230 1.24938 0.95702 0.95592 0.97424 1.69929 1.24997 1.46677 1.11095 0.86549 0.82009 0.79779 0.79443 1.20628 1.21168 1.19799 1.22379 0.98668 0.80562 0.99534 0.93968 0.93809 0.89537 0.90585 0.91859 0.93679 0.89388 0.93931 0.92042 0.92045 0.92084 0.89549 0.92838 0.93113 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.38 -5.04 10.67 -40.08 -0.43 -5.47 16 3 C 0.07 0.91 5.50 37.16 0.20 1.11 16 4 C 0.08 1.26 2.15 -27.88 -0.06 1.20 16 5 H 0.09 1.28 7.26 -51.93 -0.38 0.90 16 6 O -0.35 -5.76 9.85 -59.70 -0.59 -6.35 16 7 C 0.03 0.41 10.81 101.05 1.09 1.50 16 8 C 0.50 9.43 7.19 -10.98 -0.08 9.35 16 9 O -0.53 -11.94 16.83 -14.30 -0.24 -12.18 16 10 N -0.61 -11.47 3.33 -170.51 -0.57 -12.04 16 11 C 0.08 1.42 5.36 -2.52 -0.01 1.41 16 12 C -0.11 -2.22 5.75 -24.58 -0.14 -2.36 16 13 C 0.04 1.02 2.85 -89.93 -0.26 0.76 16 14 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 15 C -0.52 -13.42 8.51 -34.44 -0.29 -13.71 16 16 H 0.06 1.56 7.58 -52.49 -0.40 1.16 16 17 C 0.07 1.72 5.33 -17.82 -0.10 1.63 16 18 N -0.89 -23.82 12.11 55.43 0.67 -23.15 16 19 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 C 0.11 2.35 6.47 -3.06 -0.02 2.33 16 24 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.96 5.46 -51.93 -0.28 0.67 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.06 0.88 7.33 -51.93 -0.38 0.50 16 33 H 0.06 0.93 7.10 -51.93 -0.37 0.56 16 34 H 0.06 1.33 8.04 -51.93 -0.42 0.92 16 35 H 0.09 1.89 7.53 -51.93 -0.39 1.50 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 1.41 7.67 -51.93 -0.40 1.01 16 LS Contribution 314.10 15.07 4.73 4.73 Total: -1.00 -30.20 314.10 -5.94 -36.14 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -5.95 Total: -1.73 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: 1.45 Total: 4.62 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.10 Total: -35.18 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -1.26 Total: -24.00 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.20 -5.94 -36.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691103920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.483 kcal (2) G-P(sol) polarization free energy of solvation -30.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds