Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 C 1.52999 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47177 * 305.13311 * 4 3 2 6 6 O 1.42895 * 109.46918 * 65.12824 * 4 3 2 7 7 C 1.42904 * 114.00325 * 269.99888 * 6 4 3 8 8 C 1.50695 * 109.47297 * 185.13399 * 4 3 2 9 9 O 1.21281 * 119.99602 * 248.57586 * 8 4 3 10 10 N 1.34774 * 120.00047 * 68.57473 * 8 4 3 11 11 C 1.46500 * 120.00437 * 5.54185 * 10 8 4 12 12 C 1.50702 * 109.46680 * 86.30546 * 11 10 8 13 13 H 1.07999 * 120.00335 * 359.73192 * 12 11 10 14 14 C 1.37884 * 119.99562 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00208 * 359.73132 * 14 12 11 16 16 Si 1.86796 * 120.00046 * 179.72762 * 14 12 11 17 17 H 1.48495 * 109.47028 * 89.99949 * 16 14 12 18 18 H 1.48496 * 109.47445 * 210.00702 * 16 14 12 19 19 H 1.48503 * 109.47056 * 330.00227 * 16 14 12 20 20 C 1.46510 * 119.99684 * 185.53941 * 10 8 4 21 21 C 1.53000 * 117.49906 * 16.49381 * 20 10 8 22 22 C 1.52993 * 117.50003 * 307.83342 * 20 10 8 23 23 H 1.09001 * 109.47624 * 300.00212 * 1 2 3 24 24 H 1.09012 * 109.47080 * 60.00177 * 1 2 3 25 25 H 1.08999 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47240 * 59.99729 * 3 2 1 27 27 H 1.09001 * 109.47416 * 300.00067 * 3 2 1 28 28 H 1.09002 * 109.46395 * 60.00666 * 7 6 4 29 29 H 1.09004 * 109.47208 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47213 * 300.00333 * 7 6 4 31 31 H 1.09001 * 109.46828 * 326.31710 * 11 10 8 32 32 H 1.08991 * 109.47551 * 206.30832 * 11 10 8 33 33 H 0.96998 * 120.00640 * 179.97438 * 15 14 12 34 34 H 1.09001 * 115.54516 * 162.16100 * 20 10 8 35 35 H 1.08998 * 117.49916 * 359.97438 * 21 20 10 36 36 H 1.08998 * 117.49430 * 145.01536 * 21 20 10 37 37 H 1.08999 * 117.49669 * 214.98226 * 22 20 10 38 38 H 1.09002 * 117.50196 * 359.97253 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8506 0.5666 0.8413 6 8 3.9660 0.5820 -1.2214 7 6 4.0475 -0.8437 -1.1692 8 6 4.1479 2.5557 0.1278 9 8 4.7521 3.0389 -0.8062 10 7 4.0241 3.2449 1.2793 11 6 3.4011 2.6156 2.4464 12 6 4.4428 1.8480 3.2190 13 1 5.4655 1.8271 2.8726 14 6 4.0890 1.1683 4.3653 15 7 2.8437 1.1941 4.7873 16 14 5.3786 0.2105 5.3187 17 1 6.0025 1.0962 6.3342 18 1 4.7368 -0.9444 5.9964 19 1 6.4216 -0.2817 4.3833 20 6 4.5126 4.6236 1.3640 21 6 4.7921 5.3560 0.0501 22 6 5.9551 4.8899 0.9294 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.0655 -1.2554 -0.9362 29 1 4.3815 -1.2241 -2.1346 30 1 4.7579 -1.1391 -0.3972 31 1 2.6177 1.9334 2.1164 32 1 2.9678 3.3845 3.0859 33 1 2.5947 0.7156 5.5935 34 1 4.1204 5.2111 2.1941 35 1 4.6129 4.8120 -0.8773 36 1 4.5841 6.4254 0.0160 37 1 6.5119 5.6529 1.4733 38 1 6.5409 4.0393 0.5808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691179423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = -79.697304 kcal Electronic energy + Delta-G solvation = -20624.782386 eV Core-core repulsion = 17469.704340 eV Total energy + Delta-G solvation = -3155.078047 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.94631 -38.00147 -36.66560 -35.51082 -34.32586 -32.30695 -30.04429 -27.17385 -26.71356 -25.64713 -23.80882 -22.69371 -21.86627 -21.61610 -18.64932 -16.93586 -16.74755 -16.17318 -16.06031 -15.68600 -15.10700 -14.73026 -14.54584 -14.46662 -13.93423 -13.66512 -13.26721 -12.71908 -12.53299 -12.31039 -12.16124 -11.57353 -11.45708 -11.23791 -11.10274 -10.89091 -10.77941 -10.70448 -10.50766 -10.27509 -9.74638 -9.67327 -9.43139 -9.20785 -8.67553 -8.55973 -7.58925 -6.23705 -4.31158 3.08634 3.20535 3.27825 3.31003 3.40488 4.06975 4.26668 4.44645 4.58874 5.08157 5.21032 5.28632 5.46253 5.47155 5.55272 5.57342 5.64008 5.66962 5.75321 5.80852 5.84771 5.91795 6.10145 6.14968 6.16856 6.21785 6.51749 6.72984 6.88300 7.05190 7.34610 7.43099 7.59523 7.71487 7.97733 8.19154 8.73041 8.91582 9.36752 10.82721 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.010054 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.816858 B = 2784.346640 C = 3970.956722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.044 3.956 4 C 0.078 3.922 5 H 0.110 0.890 6 O -0.363 6.363 7 C 0.031 3.969 8 C 0.525 3.475 9 O -0.540 6.540 10 N -0.566 5.566 11 C 0.227 3.773 12 C -0.540 4.540 13 H 0.062 0.938 14 C 0.067 3.933 15 N -0.889 5.889 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.088 3.912 21 C -0.203 4.203 22 C -0.188 4.188 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 0.363 -6.554 7.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.033 4.033 4 C 0.017 3.983 5 H 0.128 0.872 6 O -0.281 6.281 7 C -0.066 4.066 8 C 0.312 3.688 9 O -0.420 6.420 10 N -0.296 5.296 11 C 0.108 3.892 12 C -0.579 4.579 13 H 0.080 0.920 14 C -0.136 4.136 15 N -0.527 5.527 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.017 4.017 21 C -0.240 4.240 22 C -0.226 4.226 23 H 0.063 0.937 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.703 0.462 -7.031 7.547 hybrid contribution 0.387 -0.558 1.137 1.325 sum -2.316 -0.095 -5.893 6.333 Atomic orbital electron populations 1.22712 0.81304 1.02407 0.99941 1.87840 1.19563 1.27491 1.95432 1.23195 0.92940 0.85539 1.01609 1.21916 0.92115 0.94494 0.89803 0.87234 1.87903 1.87979 1.19751 1.32444 1.22874 1.01170 0.80988 1.01573 1.19919 0.80508 0.85928 0.82408 1.90465 1.42843 1.68468 1.40177 1.47619 1.58108 1.11495 1.12422 1.19765 0.93808 0.93808 0.81861 1.21479 0.95749 1.31420 1.09251 0.91954 1.24922 0.95535 0.96183 0.96979 1.69904 1.16674 1.42402 1.23752 0.86504 0.81478 0.79544 0.80066 1.20437 1.20979 1.19712 1.21535 0.97483 0.83933 0.98712 1.23817 1.02847 0.99114 0.98272 1.23134 0.92095 1.03278 1.04123 0.93720 0.94478 0.89883 0.90320 0.92826 0.92477 0.90262 0.94189 0.93411 0.94159 0.92434 0.85722 0.84869 0.90020 0.89357 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.63 8.84 -39.95 -0.35 -6.98 16 3 C 0.04 0.80 5.21 37.16 0.19 0.99 16 4 C 0.08 1.58 2.09 -27.89 -0.06 1.52 16 5 H 0.11 2.39 6.93 -51.93 -0.36 2.03 16 6 O -0.36 -7.23 9.89 -59.59 -0.59 -7.82 16 7 C 0.03 0.49 10.71 101.05 1.08 1.57 16 8 C 0.53 11.38 6.80 -10.99 -0.07 11.30 16 9 O -0.54 -12.44 12.27 -14.21 -0.17 -12.61 16 10 N -0.57 -12.01 2.83 -167.47 -0.47 -12.49 16 11 C 0.23 5.25 4.68 -5.19 -0.02 5.23 16 12 C -0.54 -13.93 8.92 -34.44 -0.31 -14.24 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -23.92 13.29 55.43 0.74 -23.18 16 16 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.09 1.67 6.61 -67.93 -0.45 1.22 16 21 C -0.20 -3.52 9.63 -26.69 -0.26 -3.78 16 22 C -0.19 -3.37 9.88 -26.70 -0.26 -3.64 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.04 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.08 1.46 5.50 -51.93 -0.29 1.18 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.90 6.40 -51.93 -0.33 0.56 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.05 1.12 4.32 -51.93 -0.22 0.90 16 32 H 0.04 0.97 7.98 -51.93 -0.41 0.55 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.13 2.15 8.06 -51.93 -0.42 1.73 16 35 H 0.13 2.63 5.21 -52.14 -0.27 2.36 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.09 1.90 7.60 -51.93 -0.39 1.51 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -29.09 312.19 -5.94 -35.03 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.63 Total: 4.50 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 0.86 Total: 3.39 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.26 Total: -35.67 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -1.12 Total: -27.42 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.09 -5.94 -35.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691179423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.663 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds