Wall clock time and date at job start Mon Mar 30 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00024 * 2 1 4 4 C 1.52999 * 109.47360 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47177 * 305.13311 * 4 3 2 6 6 O 1.42895 * 109.46918 * 65.12824 * 4 3 2 7 7 C 1.42904 * 114.00325 * 269.99888 * 6 4 3 8 8 C 1.50695 * 109.47297 * 185.13399 * 4 3 2 9 9 O 1.21281 * 119.99602 * 248.57586 * 8 4 3 10 10 N 1.34774 * 120.00047 * 68.57473 * 8 4 3 11 11 C 1.46500 * 120.00437 * 5.54185 * 10 8 4 12 12 C 1.50702 * 109.46680 * 86.30546 * 11 10 8 13 13 H 1.07999 * 120.00335 * 359.73192 * 12 11 10 14 14 C 1.37884 * 119.99562 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00208 * 359.73132 * 14 12 11 16 16 Si 1.86796 * 120.00046 * 179.72762 * 14 12 11 17 17 H 1.48495 * 109.47028 * 89.99949 * 16 14 12 18 18 H 1.48496 * 109.47445 * 210.00702 * 16 14 12 19 19 H 1.48503 * 109.47056 * 330.00227 * 16 14 12 20 20 C 1.46510 * 119.99684 * 185.53941 * 10 8 4 21 21 C 1.53000 * 117.49906 * 16.49381 * 20 10 8 22 22 C 1.52993 * 117.50003 * 307.83342 * 20 10 8 23 23 H 1.09001 * 109.47624 * 300.00212 * 1 2 3 24 24 H 1.09012 * 109.47080 * 60.00177 * 1 2 3 25 25 H 1.08999 * 109.47089 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47240 * 59.99729 * 3 2 1 27 27 H 1.09001 * 109.47416 * 300.00067 * 3 2 1 28 28 H 1.09002 * 109.46395 * 60.00666 * 7 6 4 29 29 H 1.09004 * 109.47208 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47213 * 300.00333 * 7 6 4 31 31 H 1.09001 * 109.46828 * 326.31710 * 11 10 8 32 32 H 1.08991 * 109.47551 * 206.30832 * 11 10 8 33 33 H 0.96998 * 120.00640 * 179.97438 * 15 14 12 34 34 H 1.09001 * 115.54516 * 162.16100 * 20 10 8 35 35 H 1.08998 * 117.49916 * 359.97438 * 21 20 10 36 36 H 1.08998 * 117.49430 * 145.01536 * 21 20 10 37 37 H 1.08999 * 117.49669 * 214.98226 * 22 20 10 38 38 H 1.09002 * 117.50196 * 359.97253 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8506 0.5666 0.8413 6 8 3.9660 0.5820 -1.2214 7 6 4.0475 -0.8437 -1.1692 8 6 4.1479 2.5557 0.1278 9 8 4.7521 3.0389 -0.8062 10 7 4.0241 3.2449 1.2793 11 6 3.4011 2.6156 2.4464 12 6 4.4428 1.8480 3.2190 13 1 5.4655 1.8271 2.8726 14 6 4.0890 1.1683 4.3653 15 7 2.8437 1.1941 4.7873 16 14 5.3786 0.2105 5.3187 17 1 6.0025 1.0962 6.3342 18 1 4.7368 -0.9444 5.9964 19 1 6.4216 -0.2817 4.3833 20 6 4.5126 4.6236 1.3640 21 6 4.7921 5.3560 0.0501 22 6 5.9551 4.8899 0.9294 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.0655 -1.2554 -0.9362 29 1 4.3815 -1.2241 -2.1346 30 1 4.7579 -1.1391 -0.3972 31 1 2.6177 1.9334 2.1164 32 1 2.9678 3.3845 3.0859 33 1 2.5947 0.7156 5.5935 34 1 4.1204 5.2111 2.1941 35 1 4.6129 4.8120 -0.8773 36 1 4.5841 6.4254 0.0160 37 1 6.5119 5.6529 1.4733 38 1 6.5409 4.0393 0.5808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691179423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:14 Heat of formation + Delta-G solvation = -97.467554 kcal Electronic energy + Delta-G solvation = -20625.552962 eV Core-core repulsion = 17469.704340 eV Total energy + Delta-G solvation = -3155.848623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.57430 -39.43284 -38.06671 -37.12343 -36.04747 -34.20891 -31.52277 -29.07311 -27.95853 -26.93053 -25.44499 -24.46043 -23.31460 -23.10435 -20.25951 -18.81648 -18.26382 -17.92896 -17.50034 -17.08293 -16.59199 -16.35683 -16.15809 -15.91998 -15.55126 -14.94373 -14.79632 -14.43348 -14.00644 -13.90536 -13.85052 -13.12913 -12.98191 -12.86614 -12.62398 -12.46141 -12.37938 -12.16652 -12.14655 -11.99464 -11.46902 -11.21405 -10.87582 -10.73168 -10.48764 -10.25456 -9.28099 -8.22709 -6.36795 1.39062 1.39693 1.44078 1.51486 1.83578 2.38399 2.72511 2.91539 3.07196 3.12936 3.66890 3.84402 3.97615 4.01153 4.17719 4.21481 4.30367 4.40726 4.53155 4.56163 4.61674 4.68519 4.70168 4.82324 4.84559 4.90318 4.94083 5.09848 5.17330 5.41009 5.64703 5.87436 6.01388 6.06361 6.09331 6.43212 6.75056 7.19631 7.35218 8.82095 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.012628 B = 0.010054 C = 0.007050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.816858 B = 2784.346640 C = 3970.956722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.056 3.944 4 C 0.082 3.918 5 H 0.088 0.912 6 O -0.381 6.381 7 C 0.027 3.973 8 C 0.519 3.481 9 O -0.557 6.557 10 N -0.567 5.567 11 C 0.240 3.760 12 C -0.551 4.551 13 H 0.047 0.953 14 C 0.028 3.972 15 N -0.912 5.912 16 Si 0.951 3.049 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.275 1.275 20 C 0.063 3.937 21 C -0.184 4.184 22 C -0.186 4.186 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.269 0.731 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 0.500 -6.611 7.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.022 4.022 4 C 0.020 3.980 5 H 0.106 0.894 6 O -0.300 6.300 7 C -0.069 4.069 8 C 0.306 3.694 9 O -0.438 6.438 10 N -0.296 5.296 11 C 0.120 3.880 12 C -0.589 4.589 13 H 0.065 0.935 14 C -0.173 4.173 15 N -0.551 5.551 16 Si 0.776 3.224 17 H -0.199 1.199 18 H -0.203 1.203 19 H -0.200 1.200 20 C -0.041 4.041 21 C -0.221 4.221 22 C -0.225 4.225 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.123 0.877 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.128 0.872 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.863 0.604 -7.089 7.669 hybrid contribution 0.420 -0.621 1.110 1.339 sum -2.444 -0.017 -5.979 6.459 Atomic orbital electron populations 1.22972 0.79115 1.04204 1.00742 1.87807 1.21906 1.26782 1.95547 1.22965 0.91515 0.86138 1.01536 1.21802 0.93551 0.93312 0.89288 0.89400 1.87871 1.88166 1.21791 1.32138 1.23069 1.01475 0.79117 1.03204 1.20216 0.80376 0.86493 0.82270 1.90464 1.43605 1.69113 1.40641 1.47587 1.57888 1.12506 1.11666 1.19480 0.93190 0.93275 0.82063 1.21611 0.95515 1.31985 1.09792 0.93499 1.25545 0.97147 0.96894 0.97711 1.69969 1.17866 1.43053 1.24211 0.85660 0.79324 0.78564 0.78814 1.19857 1.20277 1.20016 1.21914 0.98474 0.83166 1.00535 1.23747 1.01574 1.00572 0.96247 1.23149 0.91696 1.03113 1.04524 0.93871 0.92695 0.87656 0.91178 0.91883 0.92121 0.87392 0.94461 0.93640 0.94994 0.92167 0.84029 0.87211 0.86420 0.86369 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.40 -13.53 8.84 -144.47 -1.28 -14.81 16 3 C 0.06 2.00 5.21 71.98 0.38 2.38 16 4 C 0.08 3.36 2.09 29.85 0.06 3.43 16 5 H 0.09 3.95 6.93 -2.39 -0.02 3.94 16 6 O -0.38 -15.18 9.89 -125.69 -1.24 -16.43 16 7 C 0.03 0.85 10.71 113.37 1.21 2.07 16 8 C 0.52 22.79 6.80 87.66 0.60 23.38 16 9 O -0.56 -25.98 12.27 15.87 0.19 -25.79 16 10 N -0.57 -24.23 2.83 -802.15 -2.27 -26.50 16 11 C 0.24 11.25 4.68 85.63 0.40 11.65 16 12 C -0.55 -28.65 8.92 25.60 0.23 -28.42 16 13 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 14 C 0.03 1.47 5.46 84.66 0.46 1.93 16 15 N -0.91 -48.90 13.29 21.45 0.28 -48.61 16 16 Si 0.95 41.73 29.54 68.60 2.03 43.75 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 C 0.06 2.34 6.61 44.99 0.30 2.63 16 21 C -0.18 -6.10 9.63 30.62 0.29 -5.81 16 22 C -0.19 -6.50 9.88 30.62 0.30 -6.20 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.07 2.63 5.50 -2.39 -0.01 2.62 16 27 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 1.85 6.40 -2.39 -0.02 1.84 16 29 H 0.11 2.71 8.14 -2.38 -0.02 2.70 16 30 H 0.04 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.05 2.17 4.32 -2.39 -0.01 2.16 16 32 H 0.03 1.55 7.98 -2.39 -0.02 1.53 16 33 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 34 H 0.14 4.67 8.06 -2.39 -0.02 4.65 16 35 H 0.11 4.27 5.21 -5.74 -0.03 4.24 16 36 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.06 2.66 7.60 -2.39 -0.02 2.64 16 Total: -1.00 -61.51 312.19 4.23 -57.28 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.03 Total: 22.18 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.48 Total: 8.93 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -1.99 Total: -75.11 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -2.33 Total: -57.03 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -61.51 4.23 -57.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691179423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.187 kcal (2) G-P(sol) polarization free energy of solvation -61.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds