Wall clock time and date at job start Mon Mar 30 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.82074 * 2 1 4 4 C 1.54381 * 109.83153 * 239.02250 * 2 1 3 5 5 C 1.55311 * 102.25175 * 261.84250 * 4 2 1 6 6 C 1.54943 * 100.93848 * 325.86515 * 5 4 2 7 7 H 1.09002 * 110.39637 * 277.48639 * 6 5 4 8 8 C 1.53002 * 110.30714 * 155.36313 * 6 5 4 9 9 N 1.46900 * 109.47085 * 182.83304 * 8 6 5 10 10 C 1.46901 * 110.99953 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46986 * 179.97438 * 10 9 8 12 12 O 1.42897 * 109.47175 * 65.00141 * 11 10 9 13 13 C 1.42905 * 114.00263 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47006 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72315 * 14 13 12 16 16 C 1.37885 * 119.99686 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 O 1.43236 * 109.83158 * 120.88859 * 2 1 3 23 23 H 1.08997 * 109.46894 * 300.56609 * 1 2 3 24 24 H 1.09005 * 109.47247 * 60.57186 * 1 2 3 25 25 H 1.09006 * 109.46933 * 180.56613 * 1 2 3 26 26 H 1.08996 * 109.46947 * 179.43684 * 3 2 1 27 27 H 1.09011 * 109.47176 * 299.43114 * 3 2 1 28 28 H 1.08996 * 109.47126 * 59.43081 * 3 2 1 29 29 H 1.09001 * 110.84900 * 20.02879 * 4 2 1 30 30 H 1.09004 * 110.85212 * 143.44827 * 4 2 1 31 31 H 1.08993 * 111.12295 * 207.94654 * 5 4 2 32 32 H 1.08994 * 111.12453 * 83.78805 * 5 4 2 33 33 H 1.09000 * 109.47216 * 62.83174 * 8 6 5 34 34 H 1.09003 * 109.47119 * 302.83026 * 8 6 5 35 35 H 1.00903 * 110.99733 * 56.04661 * 9 8 6 36 36 H 1.09002 * 109.46837 * 60.00399 * 10 9 8 37 37 H 1.08991 * 109.47330 * 299.99918 * 10 9 8 38 38 H 1.09002 * 109.47554 * 305.00340 * 11 10 9 39 39 H 1.09001 * 109.47032 * 185.00594 * 11 10 9 40 40 H 1.08998 * 109.46927 * 59.99870 * 13 12 11 41 41 H 1.09001 * 109.47019 * 300.00142 * 13 12 11 42 42 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0538 -0.7475 -1.2451 5 6 2.3682 -2.1575 -0.6750 6 6 2.8408 -1.7974 0.7560 7 1 3.8902 -1.5027 0.7465 8 6 2.6320 -2.9844 1.6986 9 7 3.0222 -2.6014 3.0620 10 6 2.8341 -3.7189 3.9969 11 6 3.2507 -3.2830 5.4031 12 8 2.3724 -2.2538 5.8626 13 6 2.6755 -1.7735 7.1739 14 6 1.6914 -0.6975 7.5547 15 1 0.9152 -0.4062 6.8627 16 6 1.7859 -0.0807 8.7842 17 7 2.7314 -0.4352 9.6268 18 14 0.5708 1.2583 9.2531 19 1 -0.6030 0.6477 9.9273 20 1 1.2261 2.2204 10.1752 21 1 0.1235 1.9714 8.0298 22 8 2.0159 -0.6917 1.1563 23 1 -0.3633 0.5226 0.8849 24 1 -0.3634 0.5049 -0.8951 25 1 -0.3633 -1.0277 0.0102 26 1 3.1387 1.4327 0.0101 27 1 1.6969 1.9524 -0.8951 28 1 1.6803 1.9584 0.8848 29 1 1.2851 -0.8033 -2.0159 30 1 2.9552 -0.2723 -1.6323 31 1 3.1637 -2.6417 -1.2413 32 1 1.4731 -2.7790 -0.6485 33 1 3.2441 -3.8233 1.3676 34 1 1.5815 -3.2752 1.6895 35 1 2.5139 -1.7851 3.3678 36 1 3.4474 -4.5631 3.6820 37 1 1.7850 -4.0143 4.0036 38 1 4.2725 -2.9042 5.3783 39 1 3.1958 -4.1362 6.0791 40 1 3.6854 -1.3636 7.1863 41 1 2.6082 -2.5955 7.8865 42 1 2.7976 -0.0015 10.4919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691859954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:42 Heat of formation + Delta-G solvation = -112.232381 kcal Electronic energy + Delta-G solvation = -19539.335115 eV Core-core repulsion = 16518.679336 eV Total energy + Delta-G solvation = -3020.655779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01372 -37.12730 -35.44554 -33.18785 -32.60679 -32.13485 -29.43115 -27.43796 -27.14269 -25.94837 -22.94016 -22.28901 -21.48922 -21.04154 -19.99355 -16.94958 -16.39165 -15.77415 -15.62719 -15.25118 -14.99829 -14.63514 -14.28072 -13.81917 -13.73722 -13.37738 -13.22209 -13.04558 -12.56122 -12.23599 -12.18817 -11.85904 -11.75340 -11.69993 -11.54450 -11.29834 -10.97318 -10.88703 -10.75864 -10.69795 -10.64500 -10.38747 -9.94359 -9.50427 -9.04456 -8.76171 -8.11429 -8.10117 -6.05606 -4.06783 3.34067 3.38727 3.44903 3.63595 4.30451 4.33689 4.40164 4.62302 4.72749 4.98472 5.01710 5.04817 5.10812 5.30098 5.30889 5.41621 5.43692 5.49188 5.51797 5.54817 5.62947 5.68863 5.76783 5.79394 5.81692 5.91795 6.07834 6.13621 6.14558 6.19835 6.27499 6.41983 7.13834 7.17605 7.32746 7.50365 7.80845 7.85279 8.21602 8.64854 9.06909 9.57794 11.06057 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.004346 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.936793 B = 6440.878685 C = 7556.888484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.100 3.900 3 C -0.154 4.154 4 C -0.145 4.145 5 C -0.151 4.151 6 C 0.083 3.917 7 H 0.077 0.923 8 C 0.062 3.938 9 N -0.685 5.685 10 C 0.065 3.935 11 C 0.062 3.938 12 O -0.398 6.398 13 C 0.197 3.803 14 C -0.513 4.513 15 H 0.066 0.934 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.271 1.271 22 O -0.361 6.361 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.364 0.636 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.039 0.961 40 H 0.006 0.994 41 H 0.004 0.996 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -3.101 -22.539 22.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.061 3.939 3 C -0.212 4.212 4 C -0.183 4.183 5 C -0.189 4.189 6 C 0.026 3.974 7 H 0.095 0.905 8 C -0.068 4.068 9 N -0.319 5.319 10 C -0.064 4.064 11 C -0.016 4.016 12 O -0.318 6.318 13 C 0.123 3.877 14 C -0.551 4.551 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 O -0.281 6.281 23 H 0.084 0.916 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.185 0.815 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.024 0.976 41 H 0.021 0.979 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.069 -3.051 -22.340 22.548 hybrid contribution -1.202 0.449 0.451 1.360 sum -1.271 -2.602 -21.889 22.080 Atomic orbital electron populations 1.22080 0.94247 1.02386 1.02312 1.22050 0.94073 0.92609 0.85178 1.22100 1.01580 0.95196 1.02313 1.23189 1.01881 0.95417 0.97812 1.23271 1.02157 0.97322 0.96139 1.23024 0.95282 0.86934 0.92210 0.90503 1.22073 0.98678 0.95981 0.90051 1.60479 1.62528 1.08184 1.00701 1.21946 0.99198 0.93483 0.91779 1.22286 0.94481 0.91710 0.93077 1.87806 1.54109 1.53617 1.36267 1.20171 0.96256 0.93647 0.77656 1.21069 1.14209 1.18955 1.00856 0.91599 1.24943 0.96095 0.97476 0.95987 1.69969 1.32739 1.42728 1.08443 0.86348 0.80687 0.81143 0.78390 1.20531 1.21091 1.19608 1.88530 1.67010 1.43189 1.29389 0.91615 0.91875 0.92350 0.92173 0.91908 0.91574 0.90234 0.90494 0.90023 0.90450 0.90497 0.95045 0.81492 0.90891 0.94910 0.93598 0.94240 0.97633 0.97867 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.73 37.16 0.32 -1.24 16 2 C 0.10 1.10 1.27 -89.90 -0.11 0.99 16 3 C -0.15 -1.59 8.75 37.16 0.33 -1.27 16 4 C -0.15 -1.23 6.09 -24.78 -0.15 -1.38 16 5 C -0.15 -1.33 6.57 -24.48 -0.16 -1.49 16 6 C 0.08 1.00 3.71 -25.70 -0.10 0.90 16 7 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 8 C 0.06 0.80 5.45 -3.82 -0.02 0.78 16 9 N -0.69 -11.23 6.50 -113.78 -0.74 -11.97 16 10 C 0.07 1.06 6.11 -3.82 -0.02 1.03 16 11 C 0.06 1.23 6.28 37.16 0.23 1.46 16 12 O -0.40 -9.99 9.85 -35.23 -0.35 -10.34 16 13 C 0.20 5.61 5.69 36.00 0.20 5.81 16 14 C -0.51 -15.55 9.43 -34.44 -0.32 -15.88 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 18 Si 0.91 22.37 29.54 -169.99 -5.02 17.35 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 O -0.36 -5.18 9.79 -35.23 -0.35 -5.52 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.56 7.82 -51.93 -0.41 0.16 16 30 H 0.08 0.60 7.85 -51.93 -0.41 0.19 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.66 8.06 -51.93 -0.42 0.25 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.36 6.98 7.77 -39.29 -0.31 6.68 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -32.28 341.71 -8.31 -40.59 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.85 Total: 0.26 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 0.10 Total: -8.72 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.00 Total: -38.77 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.69 Total: -15.86 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.28 -8.31 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691859954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.639 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds