Wall clock time and date at job start Mon Mar 30 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.82074 * 2 1 4 4 C 1.54381 * 109.83153 * 239.02250 * 2 1 3 5 5 C 1.55311 * 102.25175 * 261.84250 * 4 2 1 6 6 C 1.54943 * 100.93848 * 325.86515 * 5 4 2 7 7 H 1.09002 * 110.39637 * 277.48639 * 6 5 4 8 8 C 1.53002 * 110.30714 * 155.36313 * 6 5 4 9 9 N 1.46900 * 109.47085 * 182.83304 * 8 6 5 10 10 C 1.46901 * 110.99953 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46986 * 179.97438 * 10 9 8 12 12 O 1.42897 * 109.47175 * 65.00141 * 11 10 9 13 13 C 1.42905 * 114.00263 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47006 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72315 * 14 13 12 16 16 C 1.37885 * 119.99686 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48493 * 109.47326 * 90.00142 * 18 16 14 20 20 H 1.48506 * 109.46545 * 209.99892 * 18 16 14 21 21 H 1.48498 * 109.47210 * 329.99603 * 18 16 14 22 22 O 1.43236 * 109.83158 * 120.88859 * 2 1 3 23 23 H 1.08997 * 109.46894 * 300.56609 * 1 2 3 24 24 H 1.09005 * 109.47247 * 60.57186 * 1 2 3 25 25 H 1.09006 * 109.46933 * 180.56613 * 1 2 3 26 26 H 1.08996 * 109.46947 * 179.43684 * 3 2 1 27 27 H 1.09011 * 109.47176 * 299.43114 * 3 2 1 28 28 H 1.08996 * 109.47126 * 59.43081 * 3 2 1 29 29 H 1.09001 * 110.84900 * 20.02879 * 4 2 1 30 30 H 1.09004 * 110.85212 * 143.44827 * 4 2 1 31 31 H 1.08993 * 111.12295 * 207.94654 * 5 4 2 32 32 H 1.08994 * 111.12453 * 83.78805 * 5 4 2 33 33 H 1.09000 * 109.47216 * 62.83174 * 8 6 5 34 34 H 1.09003 * 109.47119 * 302.83026 * 8 6 5 35 35 H 1.00903 * 110.99733 * 56.04661 * 9 8 6 36 36 H 1.09002 * 109.46837 * 60.00399 * 10 9 8 37 37 H 1.08991 * 109.47330 * 299.99918 * 10 9 8 38 38 H 1.09002 * 109.47554 * 305.00340 * 11 10 9 39 39 H 1.09001 * 109.47032 * 185.00594 * 11 10 9 40 40 H 1.08998 * 109.46927 * 59.99870 * 13 12 11 41 41 H 1.09001 * 109.47019 * 300.00142 * 13 12 11 42 42 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0488 1.4394 0.0000 4 6 2.0538 -0.7475 -1.2451 5 6 2.3682 -2.1575 -0.6750 6 6 2.8408 -1.7974 0.7560 7 1 3.8902 -1.5027 0.7465 8 6 2.6320 -2.9844 1.6986 9 7 3.0222 -2.6014 3.0620 10 6 2.8341 -3.7189 3.9969 11 6 3.2507 -3.2830 5.4031 12 8 2.3724 -2.2538 5.8626 13 6 2.6755 -1.7735 7.1739 14 6 1.6914 -0.6975 7.5547 15 1 0.9152 -0.4062 6.8627 16 6 1.7859 -0.0807 8.7842 17 7 2.7314 -0.4352 9.6268 18 14 0.5708 1.2583 9.2531 19 1 -0.6030 0.6477 9.9273 20 1 1.2261 2.2204 10.1752 21 1 0.1235 1.9714 8.0298 22 8 2.0159 -0.6917 1.1563 23 1 -0.3633 0.5226 0.8849 24 1 -0.3634 0.5049 -0.8951 25 1 -0.3633 -1.0277 0.0102 26 1 3.1387 1.4327 0.0101 27 1 1.6969 1.9524 -0.8951 28 1 1.6803 1.9584 0.8848 29 1 1.2851 -0.8033 -2.0159 30 1 2.9552 -0.2723 -1.6323 31 1 3.1637 -2.6417 -1.2413 32 1 1.4731 -2.7790 -0.6485 33 1 3.2441 -3.8233 1.3676 34 1 1.5815 -3.2752 1.6895 35 1 2.5139 -1.7851 3.3678 36 1 3.4474 -4.5631 3.6820 37 1 1.7850 -4.0143 4.0036 38 1 4.2725 -2.9042 5.3783 39 1 3.1958 -4.1362 6.0791 40 1 3.6854 -1.3636 7.1863 41 1 2.6082 -2.5955 7.8865 42 1 2.7976 -0.0015 10.4919 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691859954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:42 Heat of formation + Delta-G solvation = -134.865957 kcal Electronic energy + Delta-G solvation = -19540.316581 eV Core-core repulsion = 16518.679336 eV Total energy + Delta-G solvation = -3021.637244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87476 -38.88142 -36.83678 -34.94225 -34.03753 -33.04533 -30.83311 -29.08712 -28.24538 -27.24102 -24.54374 -23.84144 -22.72848 -22.12293 -20.82868 -18.66292 -17.89565 -17.43977 -16.90110 -16.67471 -16.40234 -16.12842 -15.54064 -15.24939 -15.07622 -14.57849 -14.26730 -14.10954 -13.80028 -13.49153 -13.26561 -13.08649 -13.02293 -12.90958 -12.71905 -12.61244 -12.51830 -12.44709 -12.36464 -12.03640 -11.60096 -11.53962 -11.45098 -11.29379 -10.88189 -10.43906 -10.24553 -9.36847 -8.33357 -6.45853 1.38192 1.41553 1.53763 2.33892 2.79097 3.00226 3.19709 3.24866 3.58007 3.87067 3.92104 4.09895 4.13901 4.22886 4.27019 4.34720 4.45961 4.55637 4.59881 4.63733 4.72968 4.77219 4.80815 4.83284 4.84270 4.90690 4.94406 4.98655 5.02199 5.13266 5.16644 5.24557 5.31127 5.40806 5.53310 5.94407 6.08648 6.29873 6.39758 6.52108 6.80531 7.26009 8.79200 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.004346 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.936793 B = 6440.878685 C = 7556.888484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.086 3.914 3 C -0.153 4.153 4 C -0.138 4.138 5 C -0.141 4.141 6 C 0.077 3.923 7 H 0.069 0.931 8 C 0.063 3.937 9 N -0.697 5.697 10 C 0.074 3.926 11 C 0.053 3.947 12 O -0.411 6.411 13 C 0.211 3.789 14 C -0.549 4.549 15 H 0.059 0.941 16 C 0.007 3.993 17 N -0.930 5.930 18 Si 0.983 3.017 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.267 1.267 22 O -0.399 6.399 23 H 0.043 0.957 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.044 0.956 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.028 0.972 35 H 0.344 0.656 36 H 0.110 0.890 37 H 0.030 0.970 38 H 0.042 0.958 39 H 0.051 0.949 40 H -0.016 1.016 41 H -0.013 1.013 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -3.152 -24.306 24.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.047 3.953 3 C -0.211 4.211 4 C -0.175 4.175 5 C -0.179 4.179 6 C 0.020 3.980 7 H 0.087 0.913 8 C -0.066 4.066 9 N -0.328 5.328 10 C -0.055 4.055 11 C -0.024 4.024 12 O -0.331 6.331 13 C 0.136 3.864 14 C -0.587 4.587 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.569 5.569 18 Si 0.806 3.194 19 H -0.191 1.191 20 H -0.197 1.197 21 H -0.191 1.191 22 O -0.319 6.319 23 H 0.062 0.938 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.046 0.954 35 H 0.162 0.838 36 H 0.128 0.872 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.002 0.998 41 H 0.005 0.995 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.692 -3.134 -24.133 24.346 hybrid contribution -0.939 0.413 0.980 1.419 sum -1.632 -2.721 -23.153 23.370 Atomic orbital electron populations 1.22081 0.93967 1.02252 1.02506 1.22330 0.94439 0.92864 0.85633 1.22107 1.01261 0.95185 1.02517 1.23179 1.02802 0.94636 0.96888 1.23245 1.02946 0.97756 0.93949 1.23108 0.94753 0.86194 0.93965 0.91333 1.22209 0.98876 0.97263 0.88250 1.60541 1.62440 1.07484 1.02373 1.21943 0.99664 0.94275 0.89595 1.22628 0.93620 0.90620 0.95521 1.87773 1.55538 1.55316 1.34483 1.19798 0.94798 0.92811 0.78965 1.21377 1.15006 1.20505 1.01804 0.92272 1.25964 0.98006 0.99750 0.95401 1.70072 1.34130 1.43779 1.08959 0.85183 0.78175 0.77747 0.78302 1.19084 1.19681 1.19095 1.88507 1.67480 1.44223 1.31712 0.93792 0.89343 0.92553 0.92615 0.89391 0.93704 0.88185 0.89576 0.87772 0.90064 0.88023 0.95388 0.83847 0.87247 0.95210 0.93950 0.93090 0.99831 0.99545 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.73 71.98 0.63 -2.35 16 2 C 0.09 1.83 1.27 -10.32 -0.01 1.81 16 3 C -0.15 -3.10 8.75 71.98 0.63 -2.47 16 4 C -0.14 -1.98 6.09 31.86 0.19 -1.79 16 5 C -0.14 -2.12 6.57 32.05 0.21 -1.91 16 6 C 0.08 1.79 3.71 31.26 0.12 1.90 16 7 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 8 C 0.06 1.55 5.45 86.30 0.47 2.02 16 9 N -0.70 -22.79 6.50 -513.89 -3.34 -26.13 16 10 C 0.07 2.34 6.11 86.30 0.53 2.87 16 11 C 0.05 2.12 6.28 71.98 0.45 2.58 16 12 O -0.41 -21.33 9.85 -148.98 -1.47 -22.79 16 13 C 0.21 12.51 5.69 71.23 0.41 12.91 16 14 C -0.55 -34.19 9.43 25.60 0.24 -33.94 16 15 H 0.06 3.66 7.81 -2.92 -0.02 3.64 16 16 C 0.01 0.43 5.46 84.66 0.46 0.90 16 17 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 18 Si 0.98 45.82 29.54 68.60 2.03 47.85 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 O -0.40 -11.57 9.79 -148.98 -1.46 -13.03 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.09 1.24 8.14 -2.38 -0.02 1.23 16 25 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.05 1.14 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.05 7.82 -2.39 -0.02 1.03 16 30 H 0.09 1.09 7.85 -2.38 -0.02 1.07 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.18 8.06 -2.39 -0.02 1.16 16 33 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.34 13.65 7.77 -89.69 -0.70 12.95 16 36 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.01 -0.81 8.14 -2.39 -0.02 -0.82 16 42 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -71.21 341.71 0.63 -70.59 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.26 Total: 18.19 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 4.32 Total: -17.47 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.06 Total: -83.33 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -2.93 Total: -35.82 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -71.21 0.63 -70.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691859954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.281 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds