Wall clock time and date at job start Mon Mar 30 2020 04:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00407 * 2 1 4 4 C 1.52998 * 109.47293 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.45172 * 294.72761 * 4 3 2 6 6 O 1.20827 * 119.99943 * 25.02710 * 5 4 3 7 7 O 1.34227 * 120.00070 * 205.02439 * 5 4 3 8 8 C 1.53038 * 109.46396 * 54.70257 * 4 3 2 9 9 C 1.53109 * 109.27846 * 60.83600 * 8 4 3 10 10 C 1.53121 * 109.16071 * 57.65580 * 9 8 4 11 11 C 1.53042 * 109.28017 * 302.34503 * 10 9 8 12 12 N 1.46847 * 109.46539 * 174.75753 * 4 3 2 13 13 C 1.46904 * 111.00051 * 65.81834 * 12 4 3 14 14 C 1.50697 * 109.47117 * 169.96516 * 13 12 4 15 15 H 1.08001 * 119.99759 * 354.59984 * 14 13 12 16 16 C 1.37870 * 120.00307 * 174.32489 * 14 13 12 17 17 N 1.31514 * 119.99739 * 0.27763 * 16 14 13 18 18 Si 1.86795 * 120.00534 * 180.27524 * 16 14 13 19 19 H 1.48505 * 109.46977 * 59.99892 * 18 16 14 20 20 H 1.48503 * 109.47478 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47250 * 300.00495 * 18 16 14 22 22 H 1.08990 * 109.47647 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46889 * 300.00226 * 1 2 3 24 24 H 1.08996 * 109.47017 * 59.99655 * 1 2 3 25 25 H 1.09003 * 109.47134 * 60.00125 * 3 2 1 26 26 H 1.08994 * 109.47190 * 300.00074 * 3 2 1 27 27 H 0.96705 * 117.00055 * 179.97438 * 7 5 4 28 28 H 1.09001 * 109.49682 * 300.89457 * 8 4 3 29 29 H 1.08998 * 109.53326 * 180.80355 * 8 4 3 30 30 H 1.09003 * 109.52627 * 297.75580 * 9 8 4 31 31 H 1.08998 * 109.57596 * 177.59499 * 9 8 4 32 32 H 1.09006 * 109.50531 * 182.40355 * 10 9 8 33 33 H 1.09005 * 109.50028 * 62.28476 * 10 9 8 34 34 H 1.09000 * 109.46229 * 299.16452 * 11 10 9 35 35 H 1.08992 * 109.45182 * 179.18635 * 11 10 9 36 36 H 1.09004 * 109.46689 * 49.96825 * 13 12 4 37 37 H 1.08997 * 109.47451 * 289.96898 * 13 12 4 38 38 H 0.97012 * 120.00039 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9894 0.5520 1.2898 6 8 3.2379 -0.1634 1.9090 7 8 5.2284 0.7834 1.7512 8 6 3.9775 0.3133 -1.1786 9 6 3.5318 0.9697 -2.4881 10 6 4.1275 2.3778 -2.5726 11 6 3.6812 3.1892 -1.3542 12 7 4.1322 2.5203 -0.1272 13 6 3.8424 3.3406 1.0565 14 6 4.6653 4.6021 1.0072 15 1 5.3995 4.7377 0.2268 16 6 4.4770 5.5856 1.9549 17 7 3.5830 5.4204 2.9052 18 14 5.4916 7.1526 1.8893 19 1 5.2479 7.8463 0.5991 20 1 5.1010 8.0427 3.0120 21 1 6.9329 6.8143 2.0049 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6887 1.8463 0.8900 26 1 1.6888 1.8463 -0.8899 27 1 5.4740 0.3561 2.5832 28 1 3.5220 -0.6732 -1.0926 29 1 5.0630 0.2147 -1.1719 30 1 2.4439 1.0325 -2.5123 31 1 3.8813 0.3751 -3.3321 32 1 3.7792 2.8664 -3.4826 33 1 5.2155 2.3123 -2.5875 34 1 2.5939 3.2660 -1.3474 35 1 4.1155 4.1877 -1.4041 36 1 4.0913 2.7794 1.9573 37 1 2.7833 3.5979 1.0699 38 1 3.4502 6.1125 3.5719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692367497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:41 Heat of formation + Delta-G solvation = -129.733913 kcal Electronic energy + Delta-G solvation = -21116.105197 eV Core-core repulsion = 17958.857400 eV Total energy + Delta-G solvation = -3157.247797 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54134 -38.36353 -36.88086 -35.40808 -33.73354 -32.10154 -31.22490 -27.60256 -26.81689 -25.06995 -24.18577 -23.75219 -21.41815 -20.54051 -18.52482 -17.47195 -16.70677 -16.45566 -15.86777 -15.24054 -15.11239 -14.91374 -14.51434 -14.16932 -13.70550 -13.43006 -13.03860 -12.65485 -12.56655 -12.39375 -11.98438 -11.79411 -11.51616 -11.17949 -10.93615 -10.89197 -10.79268 -10.68122 -10.53045 -10.25605 -10.11710 -9.87114 -9.65765 -9.30259 -9.19035 -8.47757 -7.43150 -6.07147 -4.08941 2.77559 3.31068 3.35574 3.38211 3.58793 4.02138 4.35843 4.59880 4.96800 5.23225 5.25541 5.28796 5.39451 5.44807 5.52956 5.58757 5.61908 5.80707 5.82508 5.88647 6.00747 6.03967 6.19937 6.22310 6.33594 6.39816 6.64541 6.69168 7.05810 7.13775 7.19413 7.39922 7.68871 7.92511 8.03446 8.38285 8.58442 8.97729 9.54977 11.03607 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.007526 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.660095 B = 3719.721792 C = 4032.016161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.043 3.957 4 C 0.128 3.872 5 C 0.500 3.500 6 O -0.514 6.514 7 O -0.491 6.491 8 C -0.098 4.098 9 C -0.115 4.115 10 C -0.121 4.121 11 C 0.057 3.943 12 N -0.505 5.505 13 C 0.186 3.814 14 C -0.505 4.505 15 H 0.066 0.934 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.900 3.100 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.081 0.919 23 H 0.038 0.962 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.397 0.603 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.026 0.974 35 H 0.093 0.907 36 H 0.033 0.967 37 H -0.003 1.003 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.017 -8.526 -8.558 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.035 4.035 4 C 0.036 3.964 5 C 0.342 3.658 6 O -0.401 6.401 7 O -0.300 6.300 8 C -0.136 4.136 9 C -0.153 4.153 10 C -0.158 4.158 11 C -0.071 4.071 12 N -0.231 5.231 13 C 0.061 3.939 14 C -0.544 4.544 15 H 0.084 0.916 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.201 1.201 22 H 0.100 0.900 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.254 0.746 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.111 0.889 36 H 0.051 0.949 37 H 0.014 0.986 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.790 -8.665 -8.614 12.349 hybrid contribution -0.549 1.032 0.866 1.455 sum -2.338 -7.633 -7.748 11.125 Atomic orbital electron populations 1.22669 0.81960 1.02138 0.99598 1.87935 1.18794 1.26956 1.95282 1.23147 0.93438 0.85662 1.01299 1.20842 0.90744 0.93852 0.90935 1.23003 0.79200 0.77531 0.86089 1.90689 1.54953 1.36595 1.57869 1.84753 1.32977 1.69501 1.42764 1.21498 1.01849 0.97826 0.92429 1.21552 1.00442 0.96684 0.96584 1.21692 1.01671 0.94990 0.97492 1.22104 0.97276 0.98959 0.88735 1.62519 1.55598 1.00004 1.05003 1.19910 0.95305 0.92288 0.86352 1.21016 1.20402 1.00426 1.12542 0.91588 1.24991 0.95501 0.98712 0.95372 1.69955 1.33933 1.34598 1.15237 0.86528 0.80618 0.82617 0.77453 1.20249 1.21404 1.20078 0.89999 0.94288 0.94668 0.92531 0.91687 0.74636 0.90752 0.90517 0.92216 0.91811 0.92036 0.91002 0.95571 0.88856 0.94907 0.98560 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.37 -6.52 8.58 -54.42 -0.47 -6.99 16 3 C 0.04 0.80 3.40 37.16 0.13 0.93 16 4 C 0.13 2.43 0.48 -132.76 -0.06 2.37 16 5 C 0.50 10.15 5.68 36.01 0.20 10.35 16 6 O -0.51 -11.24 16.08 -25.27 -0.41 -11.65 16 7 O -0.49 -9.20 12.14 -39.25 -0.48 -9.67 16 8 C -0.10 -1.54 4.69 -26.66 -0.12 -1.67 16 9 C -0.12 -1.55 5.70 -26.61 -0.15 -1.70 16 10 C -0.12 -1.73 6.09 -26.65 -0.16 -1.90 16 11 C 0.06 1.04 5.01 -3.83 -0.02 1.02 16 12 N -0.50 -10.55 4.23 -221.77 -0.94 -11.49 16 13 C 0.19 4.73 3.86 -4.98 -0.02 4.71 16 14 C -0.51 -13.79 8.31 -34.44 -0.29 -14.08 16 15 H 0.07 1.77 7.34 -52.49 -0.39 1.38 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.24 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 1.19 7.04 -51.93 -0.37 0.82 16 26 H 0.07 1.10 4.80 -51.93 -0.25 0.85 16 27 H 0.40 5.48 9.10 45.56 0.41 5.90 16 28 H 0.07 1.15 7.52 -51.93 -0.39 0.76 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 0.80 6.68 -51.93 -0.35 0.46 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.03 0.47 6.08 -51.93 -0.32 0.16 16 35 H 0.09 1.84 6.81 -51.93 -0.35 1.49 16 36 H 0.03 0.91 5.93 -51.93 -0.31 0.60 16 37 H 0.00 -0.09 7.08 -51.93 -0.37 -0.46 16 38 H 0.26 7.32 8.31 -40.81 -0.34 6.98 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -32.10 298.55 -6.32 -38.41 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.76 Total: 3.19 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 0.52 Total: 3.06 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.20 Total: -37.09 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -1.35 Total: -28.31 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.10 -6.32 -38.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692367497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.323 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds