Wall clock time and date at job start Mon Mar 30 2020 04:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00407 * 2 1 4 4 C 1.52998 * 109.47293 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.45172 * 294.72761 * 4 3 2 6 6 O 1.20827 * 119.99943 * 25.02710 * 5 4 3 7 7 O 1.34227 * 120.00070 * 205.02439 * 5 4 3 8 8 C 1.53038 * 109.46396 * 54.70257 * 4 3 2 9 9 C 1.53109 * 109.27846 * 60.83600 * 8 4 3 10 10 C 1.53121 * 109.16071 * 57.65580 * 9 8 4 11 11 C 1.53042 * 109.28017 * 302.34503 * 10 9 8 12 12 N 1.46847 * 109.46539 * 174.75753 * 4 3 2 13 13 C 1.46904 * 111.00051 * 65.81834 * 12 4 3 14 14 C 1.50697 * 109.47117 * 169.96516 * 13 12 4 15 15 H 1.08001 * 119.99759 * 354.59984 * 14 13 12 16 16 C 1.37870 * 120.00307 * 174.32489 * 14 13 12 17 17 N 1.31514 * 119.99739 * 0.27763 * 16 14 13 18 18 Si 1.86795 * 120.00534 * 180.27524 * 16 14 13 19 19 H 1.48505 * 109.46977 * 59.99892 * 18 16 14 20 20 H 1.48503 * 109.47478 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47250 * 300.00495 * 18 16 14 22 22 H 1.08990 * 109.47647 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46889 * 300.00226 * 1 2 3 24 24 H 1.08996 * 109.47017 * 59.99655 * 1 2 3 25 25 H 1.09003 * 109.47134 * 60.00125 * 3 2 1 26 26 H 1.08994 * 109.47190 * 300.00074 * 3 2 1 27 27 H 0.96705 * 117.00055 * 179.97438 * 7 5 4 28 28 H 1.09001 * 109.49682 * 300.89457 * 8 4 3 29 29 H 1.08998 * 109.53326 * 180.80355 * 8 4 3 30 30 H 1.09003 * 109.52627 * 297.75580 * 9 8 4 31 31 H 1.08998 * 109.57596 * 177.59499 * 9 8 4 32 32 H 1.09006 * 109.50531 * 182.40355 * 10 9 8 33 33 H 1.09005 * 109.50028 * 62.28476 * 10 9 8 34 34 H 1.09000 * 109.46229 * 299.16452 * 11 10 9 35 35 H 1.08992 * 109.45182 * 179.18635 * 11 10 9 36 36 H 1.09004 * 109.46689 * 49.96825 * 13 12 4 37 37 H 1.08997 * 109.47451 * 289.96898 * 13 12 4 38 38 H 0.97012 * 120.00039 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 3.9894 0.5520 1.2898 6 8 3.2379 -0.1634 1.9090 7 8 5.2284 0.7834 1.7512 8 6 3.9775 0.3133 -1.1786 9 6 3.5318 0.9697 -2.4881 10 6 4.1275 2.3778 -2.5726 11 6 3.6812 3.1892 -1.3542 12 7 4.1322 2.5203 -0.1272 13 6 3.8424 3.3406 1.0565 14 6 4.6653 4.6021 1.0072 15 1 5.3995 4.7377 0.2268 16 6 4.4770 5.5856 1.9549 17 7 3.5830 5.4204 2.9052 18 14 5.4916 7.1526 1.8893 19 1 5.2479 7.8463 0.5991 20 1 5.1010 8.0427 3.0120 21 1 6.9329 6.8143 2.0049 22 1 -0.3634 -1.0275 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.6887 1.8463 0.8900 26 1 1.6888 1.8463 -0.8899 27 1 5.4740 0.3561 2.5832 28 1 3.5220 -0.6732 -1.0926 29 1 5.0630 0.2147 -1.1719 30 1 2.4439 1.0325 -2.5123 31 1 3.8813 0.3751 -3.3321 32 1 3.7792 2.8664 -3.4826 33 1 5.2155 2.3123 -2.5875 34 1 2.5939 3.2660 -1.3474 35 1 4.1155 4.1877 -1.4041 36 1 4.0913 2.7794 1.9573 37 1 2.7833 3.5979 1.0699 38 1 3.4502 6.1125 3.5719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692367497.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:41 Heat of formation + Delta-G solvation = -153.160095 kcal Electronic energy + Delta-G solvation = -21117.121032 eV Core-core repulsion = 17958.857400 eV Total energy + Delta-G solvation = -3158.263632 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.07116 -39.87877 -38.25918 -36.98676 -35.50941 -33.83833 -32.68225 -29.24363 -28.34222 -26.45444 -25.75112 -25.29530 -23.17210 -21.94678 -19.92803 -19.06315 -18.54771 -18.08274 -17.39412 -16.79821 -16.66949 -16.39459 -16.11133 -15.68207 -15.04875 -14.84398 -14.55342 -14.25778 -14.10711 -13.87665 -13.52878 -13.29494 -13.13684 -12.70996 -12.63864 -12.41945 -12.37151 -12.12111 -12.06624 -11.94144 -11.58000 -11.47152 -11.12929 -11.05140 -10.64373 -10.55250 -9.14177 -8.20586 -6.30567 1.18055 1.42478 1.45736 1.53399 2.14048 2.39581 2.69776 3.00686 3.12980 3.60451 3.86152 4.02042 4.11355 4.20651 4.25954 4.32319 4.44151 4.51598 4.52598 4.61983 4.76988 4.82656 4.91535 5.00521 5.08082 5.15730 5.18426 5.24853 5.37227 5.54240 5.57289 5.65300 5.98144 6.09242 6.21467 6.45377 6.84494 7.07841 7.38770 8.90378 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.021740 B = 0.007526 C = 0.006943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.660095 B = 3719.721792 C = 4032.016161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.385 6.385 3 C 0.055 3.945 4 C 0.121 3.879 5 C 0.495 3.505 6 O -0.538 6.538 7 O -0.497 6.497 8 C -0.092 4.092 9 C -0.109 4.109 10 C -0.111 4.111 11 C 0.052 3.948 12 N -0.507 5.507 13 C 0.205 3.795 14 C -0.517 4.517 15 H 0.069 0.931 16 C 0.001 3.999 17 N -0.937 5.937 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.287 1.287 21 H -0.268 1.268 22 H 0.106 0.894 23 H 0.028 0.972 24 H 0.057 0.943 25 H 0.017 0.983 26 H 0.081 0.919 27 H 0.415 0.585 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.003 0.997 37 H -0.035 1.035 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -8.722 -10.895 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.303 6.303 3 C -0.024 4.024 4 C 0.029 3.971 5 C 0.337 3.663 6 O -0.427 6.427 7 O -0.308 6.308 8 C -0.130 4.130 9 C -0.146 4.146 10 C -0.148 4.148 11 C -0.075 4.075 12 N -0.233 5.233 13 C 0.079 3.921 14 C -0.555 4.555 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.577 5.577 18 Si 0.795 3.205 19 H -0.189 1.189 20 H -0.213 1.213 21 H -0.193 1.193 22 H 0.125 0.875 23 H 0.047 0.953 24 H 0.076 0.924 25 H 0.035 0.965 26 H 0.099 0.901 27 H 0.275 0.725 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.093 0.907 36 H 0.021 0.979 37 H -0.017 1.017 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.194 -8.879 -10.970 14.164 hybrid contribution -0.769 1.025 1.634 2.077 sum -1.963 -7.854 -9.336 12.357 Atomic orbital electron populations 1.22933 0.79948 1.04014 1.00215 1.87903 1.20999 1.26058 1.95311 1.22930 0.93307 0.86052 1.00115 1.21066 0.91077 0.93085 0.91881 1.23407 0.79242 0.77137 0.86480 1.90663 1.55530 1.37871 1.58633 1.84706 1.32401 1.69660 1.44022 1.21533 1.02043 0.97422 0.92026 1.21568 1.00669 0.96176 0.96223 1.21654 1.01785 0.95116 0.96270 1.22219 0.97162 0.98842 0.89281 1.62417 1.56263 1.00381 1.04253 1.19487 0.93020 0.92150 0.87465 1.21345 1.20448 1.01220 1.12492 0.91273 1.25919 0.96577 1.02296 0.94855 1.70102 1.35682 1.35800 1.16117 0.85420 0.78969 0.78272 0.77872 1.18851 1.21264 1.19325 0.87519 0.95278 0.92441 0.96452 0.90088 0.72518 0.90246 0.90236 0.91849 0.88381 0.89031 0.90935 0.95696 0.90734 0.97884 1.01734 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.90 16 2 O -0.38 -13.23 8.58 -130.64 -1.12 -14.35 16 3 C 0.05 2.04 3.40 71.98 0.24 2.29 16 4 C 0.12 4.57 0.48 2.80 0.00 4.57 16 5 C 0.49 20.46 5.68 71.24 0.40 20.87 16 6 O -0.54 -24.11 16.08 28.19 0.45 -23.65 16 7 O -0.50 -18.93 12.14 -51.39 -0.62 -19.56 16 8 C -0.09 -2.72 4.69 30.64 0.14 -2.57 16 9 C -0.11 -2.54 5.70 30.67 0.17 -2.36 16 10 C -0.11 -2.83 6.09 30.65 0.19 -2.65 16 11 C 0.05 1.87 5.01 86.33 0.43 2.30 16 12 N -0.51 -21.35 4.23 -855.56 -3.62 -24.97 16 13 C 0.20 10.82 3.86 85.56 0.33 11.15 16 14 C -0.52 -28.72 8.31 25.60 0.21 -28.50 16 15 H 0.07 3.72 7.34 -2.91 -0.02 3.69 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.94 -56.45 13.29 21.44 0.28 -56.17 16 18 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 22 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.02 0.77 7.04 -2.39 -0.02 0.75 16 26 H 0.08 2.70 4.80 -2.39 -0.01 2.69 16 27 H 0.42 11.71 9.10 -74.05 -0.67 11.04 16 28 H 0.08 2.28 7.52 -2.39 -0.02 2.26 16 29 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.06 1.46 6.68 -2.39 -0.02 1.45 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.02 0.89 6.08 -2.39 -0.01 0.88 16 35 H 0.07 2.93 6.81 -2.39 -0.02 2.91 16 36 H 0.00 0.19 5.93 -2.38 -0.01 0.17 16 37 H -0.04 -2.03 7.08 -2.39 -0.02 -2.05 16 38 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -70.79 298.55 1.64 -69.15 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.39 Total: 16.28 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 3.84 Total: 7.54 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.33 Total: -81.14 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -1.29 Total: -57.56 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -70.79 1.64 -69.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692367497.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.009 kcal (2) G-P(sol) polarization free energy of solvation -70.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds