Wall clock time and date at job start Mon Mar 30 2020 04:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.90637 * 2 1 4 4 O 1.42898 * 109.47242 * 59.65259 * 3 2 1 5 5 C 1.53989 * 109.92014 * 121.10447 * 2 1 3 6 6 C 1.54595 * 105.14170 * 118.32377 * 5 2 1 7 7 H 1.08997 * 110.72744 * 96.58184 * 6 5 2 8 8 O 1.42905 * 110.72373 * 219.68721 * 6 5 2 9 9 C 1.54942 * 102.91978 * 338.04281 * 6 5 2 10 10 N 1.47901 * 110.07702 * 238.79345 * 2 1 3 11 11 C 1.46895 * 111.00287 * 26.39763 * 10 2 1 12 12 C 1.53008 * 109.47197 * 169.99854 * 11 10 2 13 13 C 1.52997 * 109.47011 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46565 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46621 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00435 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99972 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00266 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47158 * 89.99945 * 19 17 15 21 21 H 1.48494 * 109.47508 * 209.99980 * 19 17 15 22 22 H 1.48501 * 109.47269 * 330.00136 * 19 17 15 23 23 H 1.09007 * 109.47375 * 300.35029 * 1 2 3 24 24 H 1.09001 * 109.47766 * 60.34860 * 1 2 3 25 25 H 1.09007 * 109.47222 * 180.35226 * 1 2 3 26 26 H 1.09000 * 109.47226 * 179.65564 * 3 2 1 27 27 H 1.08999 * 109.47359 * 299.64852 * 3 2 1 28 28 H 0.96700 * 113.99845 * 180.02562 * 4 3 2 29 29 H 1.09011 * 110.30780 * 359.40810 * 5 2 1 30 30 H 1.08998 * 110.39589 * 237.28401 * 5 2 1 31 31 H 0.96696 * 114.00036 * 179.97438 * 8 6 5 32 32 H 1.08996 * 110.66464 * 155.85302 * 9 6 5 33 33 H 1.08996 * 110.66547 * 278.97699 * 9 6 5 34 34 H 1.09003 * 109.47265 * 289.99962 * 11 10 2 35 35 H 1.08993 * 109.46962 * 50.00219 * 11 10 2 36 36 H 1.08995 * 109.47104 * 300.00602 * 12 11 10 37 37 H 1.09002 * 109.46439 * 59.99900 * 12 11 10 38 38 H 1.09003 * 109.47394 * 300.00073 * 13 12 11 39 39 H 1.08993 * 109.47020 * 60.00444 * 13 12 11 40 40 H 1.08996 * 109.47376 * 299.99646 * 14 13 12 41 41 H 1.08993 * 109.47285 * 60.00367 * 14 13 12 42 42 H 0.97003 * 119.99400 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0509 1.4385 0.0000 4 8 1.5731 2.1182 1.1626 5 6 2.0546 -0.7479 1.2396 6 6 2.8579 -1.9442 0.6795 7 1 3.9212 -1.7087 0.6368 8 8 2.6326 -3.1166 1.4649 9 6 2.2731 -2.1177 -0.7448 10 7 2.0377 -0.7197 -1.1881 11 6 1.0647 -0.6730 -2.2876 12 6 1.7151 -1.2029 -3.5672 13 6 0.7015 -1.1547 -4.7122 14 6 1.3518 -1.6852 -5.9915 15 6 0.3536 -1.6372 -7.1195 16 1 -0.6448 -1.2659 -6.9417 17 6 0.7150 -2.0673 -8.3786 18 7 1.9307 -2.5200 -8.5952 19 14 -0.5225 -2.0085 -9.7767 20 1 -0.4265 -0.6977 -10.4679 21 1 -0.2317 -3.0993 -10.7414 22 1 -1.8932 -2.1817 -9.2322 23 1 -0.3634 0.5193 0.8869 24 1 -0.3635 0.5084 -0.8931 25 1 -0.3634 -1.0277 0.0063 26 1 3.1409 1.4303 0.0062 27 1 1.6966 1.9533 -0.8931 28 1 1.8647 3.0378 1.2283 29 1 1.2224 -1.1026 1.8479 30 1 2.7032 -0.0992 1.8284 31 1 3.1138 -3.8961 1.1550 32 1 2.9917 -2.6127 -1.3980 33 1 1.3361 -2.6734 -0.7108 34 1 0.2021 -1.2901 -2.0361 35 1 0.7420 0.3563 -2.4436 36 1 2.5777 -0.5858 -3.8187 37 1 2.0379 -2.2322 -3.4111 38 1 -0.1608 -1.7721 -4.4604 39 1 0.3784 -0.1256 -4.8683 40 1 2.2142 -1.0682 -6.2436 41 1 1.6747 -2.7144 -5.8352 42 1 2.1848 -2.8229 -9.4810 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698195660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:54 Heat of formation + Delta-G solvation = -113.576455 kcal Electronic energy + Delta-G solvation = -19798.202510 eV Core-core repulsion = 16777.488448 eV Total energy + Delta-G solvation = -3020.714062 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.26634 -37.00526 -36.34629 -34.68807 -32.72164 -31.16070 -30.63375 -27.78698 -26.80603 -25.20376 -24.16529 -22.07134 -20.88711 -19.93487 -18.92118 -17.63742 -17.54180 -16.21957 -15.97019 -15.24202 -15.03825 -14.68331 -14.48469 -14.31693 -13.86950 -13.25010 -13.18636 -12.76091 -12.49170 -12.38720 -12.27112 -11.83415 -11.71002 -11.48682 -11.24691 -10.97734 -10.88350 -10.69252 -10.47962 -10.47164 -10.35525 -10.11365 -10.04980 -9.61822 -9.25961 -9.00404 -8.48153 -8.32350 -5.97656 -3.99812 3.32796 3.38868 3.42060 3.43994 4.07661 4.34786 4.47406 4.49432 4.58655 4.83821 4.95430 5.15271 5.16007 5.32221 5.38063 5.43920 5.47041 5.49434 5.52252 5.69742 5.74891 5.84078 5.85986 5.94144 5.99667 6.08285 6.13540 6.26812 6.50809 6.77581 6.90837 6.95963 7.02009 7.22388 7.43195 7.45370 7.71250 7.87051 8.03440 8.46330 9.07682 9.64069 11.13699 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.003695 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.674879 B = 7576.954942 C = 8104.585002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 C 0.096 3.904 4 O -0.574 6.574 5 C -0.107 4.107 6 C 0.095 3.905 7 H 0.071 0.929 8 O -0.565 6.565 9 C 0.008 3.992 10 N -0.504 5.504 11 C 0.048 3.952 12 C -0.111 4.111 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.379 0.621 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.380 0.620 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 4.966 20.295 20.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 C 0.018 3.982 4 O -0.378 6.378 5 C -0.145 4.145 6 C 0.036 3.964 7 H 0.089 0.911 8 O -0.370 6.370 9 C -0.121 4.121 10 N -0.230 5.230 11 C -0.080 4.080 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.226 0.774 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.227 0.773 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.964 4.965 20.411 21.098 hybrid contribution -0.751 -0.207 -1.195 1.426 sum 1.213 4.758 19.216 19.833 Atomic orbital electron populations 1.22371 0.95057 1.01941 1.03039 1.21631 0.94117 0.93389 0.90375 1.21972 0.97558 0.91558 0.87141 1.86406 1.77297 1.29078 1.45064 1.22383 1.00445 0.94836 0.96804 1.22783 0.98609 0.85729 0.89317 0.91080 1.86502 1.73461 1.20739 1.56248 1.23905 1.01113 0.90799 0.96243 1.64563 1.42993 1.10207 1.05249 1.22478 0.93162 1.01225 0.91109 1.21633 0.99563 1.00582 0.93165 1.21600 0.97241 1.00235 0.95662 1.19083 0.95876 0.96129 0.90454 1.21292 0.98374 1.41944 0.94226 0.92790 1.25031 0.95251 0.95407 0.98815 1.69975 1.18193 1.43289 1.22127 0.86612 0.81688 0.77643 0.82168 1.20680 1.21236 1.19915 0.91311 0.91746 0.92653 0.92848 0.93307 0.77386 0.90234 0.90174 0.77297 0.89352 0.92594 0.94232 0.90883 0.91748 0.92724 0.93702 0.93502 0.96633 0.96754 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 6.95 37.16 0.26 -1.68 16 2 C 0.09 1.10 0.67 -130.54 -0.09 1.01 16 3 C 0.10 1.00 6.08 37.16 0.23 1.22 16 4 O -0.57 -5.42 12.54 -35.23 -0.44 -5.86 16 5 C -0.11 -1.20 5.74 -25.38 -0.15 -1.34 16 6 C 0.10 1.02 4.44 -24.87 -0.11 0.90 16 7 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 8 O -0.56 -5.89 13.40 -35.23 -0.47 -6.36 16 9 C 0.01 0.09 5.62 -1.90 -0.01 0.08 16 10 N -0.50 -6.47 4.87 -215.01 -1.05 -7.52 16 11 C 0.05 0.68 3.58 -3.82 -0.01 0.67 16 12 C -0.11 -1.91 5.31 -26.73 -0.14 -2.05 16 13 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 14 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 15 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.07 0.79 7.69 -51.92 -0.40 0.39 16 24 H 0.06 0.76 6.40 -51.93 -0.33 0.43 16 25 H 0.05 0.66 7.75 -51.93 -0.40 0.26 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.38 1.91 9.12 45.56 0.42 2.32 16 29 H 0.08 0.96 7.62 -51.92 -0.40 0.56 16 30 H 0.08 0.86 7.52 -51.93 -0.39 0.47 16 31 H 0.38 2.38 9.12 45.56 0.42 2.80 16 32 H 0.09 1.03 7.80 -51.93 -0.41 0.63 16 33 H 0.06 0.71 7.81 -51.93 -0.41 0.30 16 34 H 0.04 0.57 6.77 -51.93 -0.35 0.22 16 35 H 0.07 1.02 7.12 -51.93 -0.37 0.65 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.94 7.37 -51.93 -0.38 0.56 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -32.59 331.29 -7.89 -40.48 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -5.93 Total: 0.88 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.71 Total: -16.92 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: -0.31 Total: -34.06 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.91 Total: -12.23 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.59 -7.89 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698195660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.092 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds