Wall clock time and date at job start Mon Mar 30 2020 04:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.90637 * 2 1 4 4 O 1.42898 * 109.47242 * 59.65259 * 3 2 1 5 5 C 1.53989 * 109.92014 * 121.10447 * 2 1 3 6 6 C 1.54595 * 105.14170 * 118.32377 * 5 2 1 7 7 H 1.08997 * 110.72744 * 96.58184 * 6 5 2 8 8 O 1.42905 * 110.72373 * 219.68721 * 6 5 2 9 9 C 1.54942 * 102.91978 * 338.04281 * 6 5 2 10 10 N 1.47901 * 110.07702 * 238.79345 * 2 1 3 11 11 C 1.46895 * 111.00287 * 26.39763 * 10 2 1 12 12 C 1.53008 * 109.47197 * 169.99854 * 11 10 2 13 13 C 1.52997 * 109.47011 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.46565 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.46621 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00435 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99972 * 179.97438 * 15 14 13 18 18 N 1.31523 * 119.99809 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00266 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47158 * 89.99945 * 19 17 15 21 21 H 1.48494 * 109.47508 * 209.99980 * 19 17 15 22 22 H 1.48501 * 109.47269 * 330.00136 * 19 17 15 23 23 H 1.09007 * 109.47375 * 300.35029 * 1 2 3 24 24 H 1.09001 * 109.47766 * 60.34860 * 1 2 3 25 25 H 1.09007 * 109.47222 * 180.35226 * 1 2 3 26 26 H 1.09000 * 109.47226 * 179.65564 * 3 2 1 27 27 H 1.08999 * 109.47359 * 299.64852 * 3 2 1 28 28 H 0.96700 * 113.99845 * 180.02562 * 4 3 2 29 29 H 1.09011 * 110.30780 * 359.40810 * 5 2 1 30 30 H 1.08998 * 110.39589 * 237.28401 * 5 2 1 31 31 H 0.96696 * 114.00036 * 179.97438 * 8 6 5 32 32 H 1.08996 * 110.66464 * 155.85302 * 9 6 5 33 33 H 1.08996 * 110.66547 * 278.97699 * 9 6 5 34 34 H 1.09003 * 109.47265 * 289.99962 * 11 10 2 35 35 H 1.08993 * 109.46962 * 50.00219 * 11 10 2 36 36 H 1.08995 * 109.47104 * 300.00602 * 12 11 10 37 37 H 1.09002 * 109.46439 * 59.99900 * 12 11 10 38 38 H 1.09003 * 109.47394 * 300.00073 * 13 12 11 39 39 H 1.08993 * 109.47020 * 60.00444 * 13 12 11 40 40 H 1.08996 * 109.47376 * 299.99646 * 14 13 12 41 41 H 1.08993 * 109.47285 * 60.00367 * 14 13 12 42 42 H 0.97003 * 119.99400 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0509 1.4385 0.0000 4 8 1.5731 2.1182 1.1626 5 6 2.0546 -0.7479 1.2396 6 6 2.8579 -1.9442 0.6795 7 1 3.9212 -1.7087 0.6368 8 8 2.6326 -3.1166 1.4649 9 6 2.2731 -2.1177 -0.7448 10 7 2.0377 -0.7197 -1.1881 11 6 1.0647 -0.6730 -2.2876 12 6 1.7151 -1.2029 -3.5672 13 6 0.7015 -1.1547 -4.7122 14 6 1.3518 -1.6852 -5.9915 15 6 0.3536 -1.6372 -7.1195 16 1 -0.6448 -1.2659 -6.9417 17 6 0.7150 -2.0673 -8.3786 18 7 1.9307 -2.5200 -8.5952 19 14 -0.5225 -2.0085 -9.7767 20 1 -0.4265 -0.6977 -10.4679 21 1 -0.2317 -3.0993 -10.7414 22 1 -1.8932 -2.1817 -9.2322 23 1 -0.3634 0.5193 0.8869 24 1 -0.3635 0.5084 -0.8931 25 1 -0.3634 -1.0277 0.0063 26 1 3.1409 1.4303 0.0062 27 1 1.6966 1.9533 -0.8931 28 1 1.8647 3.0378 1.2283 29 1 1.2224 -1.1026 1.8479 30 1 2.7032 -0.0992 1.8284 31 1 3.1138 -3.8961 1.1550 32 1 2.9917 -2.6127 -1.3980 33 1 1.3361 -2.6734 -0.7108 34 1 0.2021 -1.2901 -2.0361 35 1 0.7420 0.3563 -2.4436 36 1 2.5777 -0.5858 -3.8187 37 1 2.0379 -2.2322 -3.4111 38 1 -0.1608 -1.7721 -4.4604 39 1 0.3784 -0.1256 -4.8683 40 1 2.2142 -1.0682 -6.2436 41 1 1.6747 -2.7144 -5.8352 42 1 2.1848 -2.8229 -9.4810 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698195660.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:53 Heat of formation + Delta-G solvation = -139.765000 kcal Electronic energy + Delta-G solvation = -19799.338131 eV Core-core repulsion = 16777.488448 eV Total energy + Delta-G solvation = -3021.849683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.20012 -37.77396 -37.37063 -36.23518 -34.55001 -32.45418 -31.70598 -29.40611 -27.68218 -26.51268 -25.56583 -23.39502 -22.24319 -21.41076 -19.88871 -18.49723 -18.40235 -18.27383 -16.93479 -16.52278 -16.45552 -15.94920 -15.53454 -15.41370 -15.05029 -14.45047 -14.27857 -14.23976 -13.68541 -13.62448 -13.45579 -13.23526 -12.96419 -12.93354 -12.73644 -12.44537 -12.26834 -12.08570 -11.97502 -11.71300 -11.52449 -11.33875 -11.28681 -11.02815 -10.91986 -10.81878 -10.55166 -9.50116 -8.19910 -6.31247 1.39636 1.41107 1.52240 2.40602 2.54469 3.12959 3.30180 3.47054 3.59642 3.71666 4.00114 4.08917 4.11713 4.21295 4.30715 4.32360 4.50194 4.55967 4.59422 4.61798 4.64780 4.76736 4.80944 4.85634 4.91852 4.97396 5.05575 5.11402 5.19411 5.22736 5.27862 5.36167 5.55127 5.77019 5.86481 5.89023 6.00315 6.26127 6.83514 6.86213 6.93010 7.38123 8.91957 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.030176 B = 0.003695 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.674879 B = 7576.954942 C = 8104.585002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 C 0.101 3.899 4 O -0.583 6.583 5 C -0.105 4.105 6 C 0.103 3.897 7 H 0.083 0.917 8 O -0.577 6.577 9 C 0.006 3.994 10 N -0.508 5.508 11 C 0.059 3.941 12 C -0.100 4.100 13 C -0.097 4.097 14 C 0.024 3.976 15 C -0.545 4.545 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.965 3.035 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.264 1.264 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.399 0.601 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.397 0.603 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.052 0.948 40 H -0.010 1.010 41 H -0.011 1.011 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.388 5.607 20.873 21.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.002 3.998 3 C 0.022 3.978 4 O -0.391 6.391 5 C -0.143 4.143 6 C 0.043 3.957 7 H 0.101 0.899 8 O -0.385 6.385 9 C -0.122 4.122 10 N -0.234 5.234 11 C -0.068 4.068 12 C -0.138 4.138 13 C -0.135 4.135 14 C -0.013 4.013 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.789 3.211 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.188 1.188 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.249 0.751 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.247 0.753 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.009 0.991 41 H 0.007 0.993 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.315 5.616 21.009 21.786 hybrid contribution -0.508 -0.421 -1.338 1.492 sum 0.806 5.195 19.671 20.362 Atomic orbital electron populations 1.22321 0.95202 1.01453 1.02997 1.21708 0.94054 0.94193 0.89844 1.21850 0.97727 0.90780 0.87406 1.86362 1.77516 1.30725 1.44510 1.22360 1.00275 0.95158 0.96492 1.22710 0.98985 0.85746 0.88237 0.89880 1.86465 1.74116 1.21487 1.56382 1.23937 1.00792 0.90219 0.97262 1.64520 1.42447 1.10918 1.05511 1.22252 0.93044 1.01265 0.90285 1.21439 0.98415 1.00514 0.93409 1.21402 0.97716 1.00056 0.94323 1.19008 0.95053 0.94389 0.92871 1.21744 0.99046 1.42134 0.95377 0.92270 1.25999 0.97316 0.94747 1.01831 1.70107 1.20281 1.44019 1.23032 0.85449 0.79210 0.78000 0.78405 1.19682 1.20684 1.18773 0.91128 0.91949 0.93347 0.92348 0.93578 0.75133 0.91187 0.89557 0.75281 0.89320 0.93519 0.94238 0.90313 0.92379 0.93090 0.93403 0.92967 0.99126 0.99267 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 6.95 71.98 0.50 -3.08 16 2 C 0.09 1.99 0.67 3.67 0.00 1.99 16 3 C 0.10 1.91 6.08 71.98 0.44 2.35 16 4 O -0.58 -9.83 12.54 -148.98 -1.87 -11.69 16 5 C -0.10 -2.20 5.74 31.47 0.18 -2.01 16 6 C 0.10 2.03 4.44 31.80 0.14 2.17 16 7 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 8 O -0.58 -11.14 13.40 -148.98 -2.00 -13.13 16 9 C 0.01 0.14 5.62 86.65 0.49 0.63 16 10 N -0.51 -12.43 4.87 -834.15 -4.06 -16.48 16 11 C 0.06 1.63 3.58 86.31 0.31 1.94 16 12 C -0.10 -3.39 5.31 30.60 0.16 -3.23 16 13 C -0.10 -4.01 5.15 30.59 0.16 -3.85 16 14 C 0.02 1.29 4.97 29.85 0.15 1.44 16 15 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 16 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 18 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 19 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 23 H 0.07 1.53 7.69 -2.38 -0.02 1.51 16 24 H 0.06 1.39 6.40 -2.39 -0.02 1.37 16 25 H 0.05 1.12 7.75 -2.38 -0.02 1.10 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.40 3.12 9.12 -74.06 -0.68 2.44 16 29 H 0.07 1.60 7.62 -2.38 -0.02 1.58 16 30 H 0.09 1.69 7.52 -2.39 -0.02 1.68 16 31 H 0.40 4.34 9.12 -74.06 -0.68 3.67 16 32 H 0.09 2.00 7.80 -2.39 -0.02 1.98 16 33 H 0.05 1.15 7.81 -2.39 -0.02 1.13 16 34 H 0.04 1.10 6.77 -2.39 -0.02 1.08 16 35 H 0.08 2.09 7.12 -2.39 -0.02 2.07 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.76 7.37 -2.39 -0.02 1.74 16 38 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 41 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -69.03 331.29 -2.74 -71.78 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -0.35 Total: 12.85 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 3.22 Total: -32.66 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -3.77 Total: -73.83 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -3.86 Total: -24.83 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.03 -2.74 -71.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698195660.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.986 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds