Wall clock time and date at job start Mon Mar 30 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47549 * 2 1 4 4 C 1.53007 * 109.47040 * 120.00152 * 2 1 3 5 5 H 1.08996 * 110.83011 * 303.64683 * 4 2 1 6 6 C 1.54996 * 110.90709 * 67.28967 * 4 2 1 7 7 O 1.44382 * 103.48751 * 155.22415 * 6 4 2 8 8 C 1.43743 * 106.97627 * 319.93745 * 7 6 4 9 9 C 1.54103 * 107.29497 * 26.51607 * 8 7 6 10 10 H 1.08997 * 110.49004 * 239.16482 * 9 8 7 11 11 N 1.46896 * 110.48790 * 116.64273 * 9 8 7 12 12 C 1.46904 * 110.99991 * 86.45725 * 11 9 8 13 13 C 1.52999 * 109.47152 * 179.97438 * 12 11 9 14 14 O 1.42899 * 109.46889 * 64.99954 * 13 12 11 15 15 C 1.42905 * 113.99778 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46972 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47141 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47162 * 120.00342 * 20 18 16 23 23 H 1.48501 * 109.47494 * 240.00320 * 20 18 16 24 24 H 1.08998 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46729 * 300.00361 * 1 2 3 26 26 H 1.09001 * 109.46853 * 60.00016 * 1 2 3 27 27 H 1.09008 * 109.47150 * 239.99543 * 2 1 3 28 28 H 1.09003 * 109.47139 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.46788 * 299.99999 * 3 2 1 30 30 H 1.08997 * 109.46710 * 60.00067 * 3 2 1 31 31 H 1.09004 * 110.61915 * 36.72804 * 6 4 2 32 32 H 1.08994 * 110.75795 * 273.78725 * 6 4 2 33 33 H 1.09002 * 109.88439 * 267.09151 * 8 7 6 34 34 H 1.08995 * 110.00592 * 146.00822 * 8 7 6 35 35 H 1.00897 * 110.99820 * 210.40791 * 11 9 8 36 36 H 1.09004 * 109.46935 * 59.99852 * 12 11 9 37 37 H 1.08993 * 109.46751 * 300.00178 * 12 11 9 38 38 H 1.08997 * 109.47286 * 304.99937 * 13 12 11 39 39 H 1.08997 * 109.46848 * 185.00035 * 13 12 11 40 40 H 1.09000 * 109.47187 * 300.00233 * 15 14 13 41 41 H 1.09001 * 109.46558 * 60.00281 * 15 14 13 42 42 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6370 -0.2637 2.1527 6 6 1.6973 -2.2319 1.1944 7 8 2.6971 -2.8351 2.0436 8 6 3.9368 -2.1573 1.7791 9 6 3.5876 -0.7408 1.2829 10 1 3.9949 -0.5747 0.2856 11 7 4.0943 0.2714 2.2191 12 6 5.4877 0.6216 1.9125 13 6 5.9790 1.6763 2.9059 14 8 6.0105 1.1150 4.2197 15 6 6.4584 2.0224 5.2288 16 6 6.4525 1.3287 6.5666 17 1 6.1378 0.2980 6.6390 18 6 6.8478 2.0099 7.6982 19 7 7.2296 3.2654 7.6102 20 14 6.8399 1.1502 9.3566 21 1 6.3713 -0.2487 9.1867 22 1 8.2143 1.1466 9.9188 23 1 5.9282 1.8691 10.2825 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.7822 -2.6080 0.1748 32 1 0.6977 -2.4158 1.5881 33 1 4.4950 -2.6921 1.0107 34 1 4.5296 -2.0946 2.6916 35 1 3.5067 1.0916 2.2176 36 1 5.5476 1.0208 0.8999 37 1 6.1113 -0.2690 1.9893 38 1 5.3030 2.5312 2.8922 39 1 6.9810 2.0009 2.6253 40 1 7.4704 2.3538 4.9962 41 1 5.7925 2.8847 5.2633 42 1 7.5081 3.7445 8.4062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699726913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:59 Heat of formation + Delta-G solvation = -108.958471 kcal Electronic energy + Delta-G solvation = -19762.476624 eV Core-core repulsion = 16741.962812 eV Total energy + Delta-G solvation = -3020.513812 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01382 -36.99230 -36.01180 -34.86547 -32.63464 -30.40409 -28.96327 -27.46470 -27.32760 -26.21941 -23.11692 -22.28586 -21.79898 -20.87831 -20.02774 -16.90237 -16.35938 -16.17067 -15.62534 -15.56482 -15.06922 -14.70142 -14.33276 -13.94790 -13.74736 -13.60824 -13.32682 -13.27964 -12.73977 -12.42169 -12.40927 -12.13947 -11.64879 -11.44384 -11.32551 -11.22320 -10.91177 -10.80050 -10.72970 -10.69901 -10.65673 -10.39602 -9.94003 -9.63342 -9.02668 -8.76880 -8.24729 -8.09824 -6.05917 -4.06584 3.33435 3.39766 3.47534 3.90930 4.09516 4.29134 4.40208 4.55542 4.70721 4.83078 4.90630 5.02513 5.13132 5.17827 5.26366 5.30826 5.38492 5.40638 5.49075 5.56166 5.59748 5.62608 5.66466 5.71755 5.83294 5.86495 5.95668 6.01104 6.08059 6.10251 6.13755 6.30476 6.86686 7.13639 7.18954 7.48015 7.50976 7.86728 8.21962 8.66184 9.08594 9.58315 11.05877 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.004035 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.973745 B = 6937.189688 C = 7311.769065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.152 4.152 4 C -0.121 4.121 5 H 0.098 0.902 6 C 0.054 3.946 7 O -0.374 6.374 8 C 0.053 3.947 9 C 0.060 3.940 10 H 0.054 0.946 11 N -0.664 5.664 12 C 0.063 3.937 13 C 0.065 3.935 14 O -0.380 6.380 15 C 0.193 3.807 16 C -0.509 4.509 17 H 0.068 0.932 18 C 0.055 3.945 19 N -0.901 5.901 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.102 0.898 35 H 0.342 0.658 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.040 0.960 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.037 -5.728 -18.393 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.209 4.209 4 C -0.140 4.140 5 H 0.116 0.884 6 C -0.023 4.023 7 O -0.293 6.293 8 C -0.025 4.025 9 C -0.051 4.051 10 H 0.072 0.928 11 N -0.297 5.297 12 C -0.066 4.066 13 C -0.013 4.013 14 O -0.299 6.299 15 C 0.119 3.881 16 C -0.547 4.547 17 H 0.086 0.914 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.162 0.838 36 H 0.051 0.949 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.876 -6.401 -17.602 21.659 hybrid contribution 0.155 0.838 -0.143 0.864 sum -10.722 -5.563 -17.745 21.466 Atomic orbital electron populations 1.21856 0.94774 1.01867 1.02043 1.21099 0.96073 0.96307 0.97052 1.21913 1.00992 0.95811 1.02217 1.23014 0.94638 0.96775 0.99549 0.88419 1.23507 0.93299 0.90803 0.94669 1.88902 1.18752 1.58826 1.62779 1.23298 0.86979 0.90193 1.01980 1.22927 0.93946 0.93968 0.94222 0.92819 1.60438 1.02874 1.15015 1.51352 1.22061 0.89807 0.99525 0.95209 1.22214 0.98196 0.94454 0.86429 1.87963 1.87850 1.39993 1.14099 1.20192 0.93136 0.89045 0.85730 1.21116 1.43753 0.99170 0.90706 0.91411 1.24948 0.95248 0.94940 0.99456 1.69978 1.45097 1.09485 1.29522 0.86295 0.77603 0.79818 0.82887 1.19401 1.20922 1.20892 0.92553 0.92295 0.92634 0.91181 0.92807 0.92486 0.92096 0.92562 0.89151 0.93023 0.88002 0.83771 0.94863 0.90332 0.94835 0.94166 0.98010 0.97908 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.05 37.16 0.34 -0.71 16 2 C -0.09 -0.70 2.34 -90.62 -0.21 -0.91 16 3 C -0.15 -1.25 8.20 37.16 0.30 -0.95 16 4 C -0.12 -1.24 2.15 -88.61 -0.19 -1.43 16 5 H 0.10 1.15 8.01 -51.93 -0.42 0.73 16 6 C 0.05 0.57 6.39 38.21 0.24 0.81 16 7 O -0.37 -5.36 11.52 -35.23 -0.41 -5.76 16 8 C 0.05 0.71 7.42 37.73 0.28 0.99 16 9 C 0.06 0.71 2.02 -66.18 -0.13 0.58 16 10 H 0.05 0.58 7.23 -51.93 -0.38 0.20 16 11 N -0.66 -9.58 6.04 -105.11 -0.63 -10.21 16 12 C 0.06 0.92 5.91 -3.82 -0.02 0.90 16 13 C 0.07 1.20 6.22 37.16 0.23 1.43 16 14 O -0.38 -9.34 10.27 -35.23 -0.36 -9.70 16 15 C 0.19 5.42 5.69 36.01 0.20 5.62 16 16 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 17 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 20 Si 0.91 22.34 29.54 -169.99 -5.02 17.32 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H 0.06 0.37 7.49 -51.93 -0.39 -0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.54 8.09 -51.92 -0.42 0.12 16 28 H 0.05 0.48 6.71 -51.93 -0.35 0.13 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 8.01 -51.93 -0.42 0.09 16 32 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.61 7.93 -51.93 -0.41 1.19 16 35 H 0.34 4.68 7.35 -39.29 -0.29 4.39 16 36 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 41 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 336.77 15.07 5.08 5.08 Total: -1.00 -32.43 336.77 -7.67 -40.10 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.68 Total: -2.29 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 0.62 Total: -7.85 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.10 Total: -36.88 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.77 Total: -15.47 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.43 -7.67 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699726913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.859 kcal (2) G-P(sol) polarization free energy of solvation -32.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds