Wall clock time and date at job start Mon Mar 30 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47549 * 2 1 4 4 C 1.53007 * 109.47040 * 120.00152 * 2 1 3 5 5 H 1.08996 * 110.83011 * 303.64683 * 4 2 1 6 6 C 1.54996 * 110.90709 * 67.28967 * 4 2 1 7 7 O 1.44382 * 103.48751 * 155.22415 * 6 4 2 8 8 C 1.43743 * 106.97627 * 319.93745 * 7 6 4 9 9 C 1.54103 * 107.29497 * 26.51607 * 8 7 6 10 10 H 1.08997 * 110.49004 * 239.16482 * 9 8 7 11 11 N 1.46896 * 110.48790 * 116.64273 * 9 8 7 12 12 C 1.46904 * 110.99991 * 86.45725 * 11 9 8 13 13 C 1.52999 * 109.47152 * 179.97438 * 12 11 9 14 14 O 1.42899 * 109.46889 * 64.99954 * 13 12 11 15 15 C 1.42905 * 113.99778 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46972 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47141 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47162 * 120.00342 * 20 18 16 23 23 H 1.48501 * 109.47494 * 240.00320 * 20 18 16 24 24 H 1.08998 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46729 * 300.00361 * 1 2 3 26 26 H 1.09001 * 109.46853 * 60.00016 * 1 2 3 27 27 H 1.09008 * 109.47150 * 239.99543 * 2 1 3 28 28 H 1.09003 * 109.47139 * 180.02562 * 3 2 1 29 29 H 1.08992 * 109.46788 * 299.99999 * 3 2 1 30 30 H 1.08997 * 109.46710 * 60.00067 * 3 2 1 31 31 H 1.09004 * 110.61915 * 36.72804 * 6 4 2 32 32 H 1.08994 * 110.75795 * 273.78725 * 6 4 2 33 33 H 1.09002 * 109.88439 * 267.09151 * 8 7 6 34 34 H 1.08995 * 110.00592 * 146.00822 * 8 7 6 35 35 H 1.00897 * 110.99820 * 210.40791 * 11 9 8 36 36 H 1.09004 * 109.46935 * 59.99852 * 12 11 9 37 37 H 1.08993 * 109.46751 * 300.00178 * 12 11 9 38 38 H 1.08997 * 109.47286 * 304.99937 * 13 12 11 39 39 H 1.08997 * 109.46848 * 185.00035 * 13 12 11 40 40 H 1.09000 * 109.47187 * 300.00233 * 15 14 13 41 41 H 1.09001 * 109.46558 * 60.00281 * 15 14 13 42 42 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6370 -0.2637 2.1527 6 6 1.6973 -2.2319 1.1944 7 8 2.6971 -2.8351 2.0436 8 6 3.9368 -2.1573 1.7791 9 6 3.5876 -0.7408 1.2829 10 1 3.9949 -0.5747 0.2856 11 7 4.0943 0.2714 2.2191 12 6 5.4877 0.6216 1.9125 13 6 5.9790 1.6763 2.9059 14 8 6.0105 1.1150 4.2197 15 6 6.4584 2.0224 5.2288 16 6 6.4525 1.3287 6.5666 17 1 6.1378 0.2980 6.6390 18 6 6.8478 2.0099 7.6982 19 7 7.2296 3.2654 7.6102 20 14 6.8399 1.1502 9.3566 21 1 6.3713 -0.2487 9.1867 22 1 8.2143 1.1466 9.9188 23 1 5.9282 1.8691 10.2825 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.7822 -2.6080 0.1748 32 1 0.6977 -2.4158 1.5881 33 1 4.4950 -2.6921 1.0107 34 1 4.5296 -2.0946 2.6916 35 1 3.5067 1.0916 2.2176 36 1 5.5476 1.0208 0.8999 37 1 6.1113 -0.2690 1.9893 38 1 5.3030 2.5312 2.8922 39 1 6.9810 2.0009 2.6253 40 1 7.4704 2.3538 4.9962 41 1 5.7925 2.8847 5.2633 42 1 7.5081 3.7445 8.4062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699726913.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:59 Heat of formation + Delta-G solvation = -132.065061 kcal Electronic energy + Delta-G solvation = -19763.478601 eV Core-core repulsion = 16741.962812 eV Total energy + Delta-G solvation = -3021.515789 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94103 -38.70542 -36.94844 -36.04574 -34.82816 -31.59775 -29.96606 -29.22762 -27.98811 -27.71820 -24.49795 -23.98367 -22.99360 -21.89847 -20.81555 -18.63665 -17.91766 -17.43718 -17.01159 -16.69982 -16.46819 -16.30094 -15.60103 -15.33016 -14.94314 -14.71950 -14.34572 -14.19931 -13.98566 -13.68337 -13.51408 -13.19108 -12.99144 -12.88321 -12.78766 -12.45963 -12.29681 -12.24028 -12.17546 -11.78353 -11.57712 -11.46682 -11.39318 -11.23913 -10.86296 -10.60911 -10.18813 -9.30974 -8.32052 -6.43634 1.39554 1.40885 1.56144 2.35507 2.98870 3.01624 3.08626 3.24957 3.44321 3.79622 3.93244 4.10555 4.15838 4.22038 4.26334 4.36662 4.39994 4.49683 4.55846 4.66072 4.68469 4.77617 4.79640 4.82697 4.84804 4.95003 4.95557 4.99136 5.03432 5.12785 5.19743 5.24122 5.38604 5.47988 5.56211 5.91399 5.98061 6.13795 6.42742 6.58056 6.87208 7.28789 8.80560 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.004035 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.973745 B = 6937.189688 C = 7311.769065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.152 4.152 4 C -0.114 4.114 5 H 0.078 0.922 6 C 0.051 3.949 7 O -0.404 6.404 8 C 0.051 3.949 9 C 0.065 3.935 10 H 0.076 0.924 11 N -0.687 5.687 12 C 0.074 3.926 13 C 0.054 3.946 14 O -0.397 6.397 15 C 0.209 3.791 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.931 5.931 20 Si 0.982 3.018 21 H -0.267 1.267 22 H -0.269 1.269 23 H -0.270 1.270 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.345 0.655 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.049 0.951 40 H -0.015 1.015 41 H -0.016 1.016 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.736 -6.270 -19.390 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 C -0.209 4.209 4 C -0.133 4.133 5 H 0.096 0.904 6 C -0.025 4.025 7 O -0.323 6.323 8 C -0.027 4.027 9 C -0.045 4.045 10 H 0.093 0.907 11 N -0.321 5.321 12 C -0.055 4.055 13 C -0.023 4.023 14 O -0.317 6.317 15 C 0.133 3.867 16 C -0.583 4.583 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.805 3.195 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.196 1.196 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.165 0.835 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.582 -6.936 -18.629 23.006 hybrid contribution 0.349 1.030 0.091 1.091 sum -11.233 -5.906 -18.537 22.465 Atomic orbital electron populations 1.21850 0.93950 1.02425 1.02216 1.21065 0.96694 0.95906 0.96118 1.21913 1.00640 0.95997 1.02376 1.22949 0.93404 0.96948 0.99985 0.90391 1.23732 0.92876 0.90574 0.95339 1.88862 1.19698 1.59579 1.64176 1.23293 0.86803 0.91591 1.00995 1.22936 0.95024 0.92191 0.94361 0.90672 1.60358 1.02896 1.15752 1.53126 1.21956 0.89813 0.98144 0.95572 1.22597 0.99207 0.96156 0.84325 1.87919 1.87664 1.39973 1.16129 1.19797 0.91657 0.88715 0.86488 1.21414 1.45362 0.99142 0.92427 0.92418 1.25932 0.93986 0.95629 1.03565 1.70071 1.44916 1.10848 1.31202 0.85157 0.78391 0.78577 0.77411 1.19124 1.19459 1.19551 0.91841 0.93073 0.91541 0.89883 0.93315 0.91257 0.93041 0.90357 0.88170 0.91105 0.91334 0.83455 0.91054 0.90998 0.94258 0.93309 0.99755 0.99847 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.05 71.98 0.65 -1.10 16 2 C -0.08 -1.09 2.34 -10.79 -0.03 -1.11 16 3 C -0.15 -2.20 8.20 71.98 0.59 -1.61 16 4 C -0.11 -2.19 2.15 -9.49 -0.02 -2.21 16 5 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 6 C 0.05 0.99 6.39 72.66 0.46 1.45 16 7 O -0.40 -11.40 11.52 -148.98 -1.72 -13.11 16 8 C 0.05 1.34 7.42 72.36 0.54 1.87 16 9 C 0.06 1.45 2.02 45.91 0.09 1.55 16 10 H 0.08 1.39 7.23 -2.39 -0.02 1.37 16 11 N -0.69 -19.54 6.04 -486.46 -2.94 -22.48 16 12 C 0.07 2.09 5.91 86.30 0.51 2.60 16 13 C 0.05 2.01 6.22 71.98 0.45 2.46 16 14 O -0.40 -20.10 10.27 -148.98 -1.53 -21.63 16 15 C 0.21 12.11 5.69 71.24 0.41 12.51 16 16 C -0.55 -33.75 9.43 25.60 0.24 -33.51 16 17 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 18 C 0.01 0.42 5.46 84.65 0.46 0.89 16 19 N -0.93 -56.99 13.29 21.45 0.28 -56.71 16 20 Si 0.98 45.75 29.54 68.60 2.03 47.78 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H 0.06 0.67 7.49 -2.39 -0.02 0.65 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.98 8.09 -2.38 -0.02 0.96 16 28 H 0.05 0.75 6.71 -2.39 -0.02 0.73 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.18 8.01 -2.38 -0.02 1.16 16 32 H 0.10 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 2.24 7.93 -2.39 -0.02 2.23 16 35 H 0.35 9.32 7.35 -89.70 -0.66 8.66 16 36 H 0.07 1.50 8.08 -2.38 -0.02 1.48 16 37 H 0.07 2.13 8.11 -2.39 -0.02 2.11 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -70.69 336.77 0.79 -69.90 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.31 Total: 12.46 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: 4.36 Total: -16.21 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.65 Total: -79.19 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -3.25 Total: -34.74 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -70.69 0.79 -69.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699726913.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.167 kcal (2) G-P(sol) polarization free energy of solvation -70.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds