Wall clock time and date at job start Mon Mar 30 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47335 * 2 1 4 4 C 1.52998 * 109.47036 * 120.00377 * 2 1 3 5 5 H 1.08997 * 110.56358 * 304.03856 * 4 2 1 6 6 C 1.54482 * 110.50952 * 181.36501 * 4 2 1 7 7 O 1.44423 * 104.80306 * 217.37739 * 6 4 2 8 8 C 1.44425 * 105.27608 * 40.51150 * 7 6 4 9 9 C 1.54486 * 104.80104 * 319.48708 * 8 7 6 10 10 H 1.08999 * 110.51392 * 265.33460 * 9 8 7 11 11 N 1.46904 * 110.50897 * 142.62382 * 9 8 7 12 12 C 1.46899 * 110.99743 * 90.35780 * 11 9 8 13 13 C 1.53005 * 109.46943 * 180.02562 * 12 11 9 14 14 O 1.42897 * 109.47021 * 65.00149 * 13 12 11 15 15 C 1.42903 * 113.99850 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47268 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00116 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00020 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00367 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99817 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47105 * 90.00368 * 20 18 16 22 22 H 1.48498 * 109.47129 * 210.00114 * 20 18 16 23 23 H 1.48500 * 109.46925 * 329.99941 * 20 18 16 24 24 H 1.08997 * 109.47605 * 186.06825 * 1 2 3 25 25 H 1.09007 * 109.46602 * 306.06746 * 1 2 3 26 26 H 1.09004 * 109.47033 * 66.06132 * 1 2 3 27 27 H 1.09003 * 109.47133 * 240.00444 * 2 1 3 28 28 H 1.08999 * 109.47276 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47469 * 300.00605 * 3 2 1 30 30 H 1.09005 * 109.47157 * 60.00148 * 3 2 1 31 31 H 1.09004 * 110.37309 * 336.20396 * 6 4 2 32 32 H 1.08997 * 110.37526 * 98.43588 * 6 4 2 33 33 H 1.09007 * 110.37501 * 200.66432 * 8 7 6 34 34 H 1.08993 * 110.37634 * 78.31824 * 8 7 6 35 35 H 1.00902 * 111.00104 * 326.40485 * 11 9 8 36 36 H 1.08994 * 109.47411 * 300.00199 * 12 11 9 37 37 H 1.09007 * 109.47304 * 60.00277 * 12 11 9 38 38 H 1.09002 * 109.47252 * 185.00597 * 13 12 11 39 39 H 1.09005 * 109.47116 * 304.99789 * 13 12 11 40 40 H 1.09002 * 109.46906 * 299.99796 * 15 14 13 41 41 H 1.08998 * 109.47503 * 59.99628 * 15 14 13 42 42 H 0.96995 * 120.00486 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6290 -0.2647 2.1495 6 6 3.5841 -0.7056 1.2908 7 8 3.9520 -1.9950 1.8272 8 6 3.0512 -2.9370 1.2051 9 6 1.6812 -2.2230 1.1916 10 1 1.0929 -2.5089 2.0635 11 7 0.9525 -2.5311 -0.0462 12 6 0.1120 -3.7242 0.1208 13 6 -0.6289 -4.0131 -1.1863 14 8 0.3149 -4.3549 -2.2034 15 6 -0.2766 -4.6443 -3.4716 16 6 0.8045 -4.9894 -4.4631 17 1 1.8398 -4.9873 -4.1557 18 6 0.4719 -5.3076 -5.7628 19 7 -0.7887 -5.3096 -6.1374 20 14 1.8122 -5.7346 -6.9920 21 1 2.0645 -7.1977 -6.9609 22 1 1.3788 -5.3359 -8.3553 23 1 3.0586 -5.0096 -6.6370 24 1 -0.3634 -1.0218 0.1086 25 1 -0.3633 0.6051 0.8308 26 1 -0.3633 0.4170 -0.9393 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9896 -0.5828 0.2865 32 1 3.9381 0.0933 1.9424 33 1 2.9954 -3.8536 1.7926 34 1 3.3747 -3.1564 0.1877 35 1 1.5882 -2.6422 -0.8219 36 1 0.7394 -4.5774 0.3786 37 1 -0.6109 -3.5508 0.9180 38 1 -1.3190 -4.8436 -1.0370 39 1 -1.1869 -3.1276 -1.4911 40 1 -0.9595 -5.4878 -3.3700 41 1 -0.8269 -3.7718 -3.8236 42 1 -1.0227 -5.5338 -7.0516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699726964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:04 Heat of formation + Delta-G solvation = -102.241182 kcal Electronic energy + Delta-G solvation = -20088.713273 eV Core-core repulsion = 17068.490744 eV Total energy + Delta-G solvation = -3020.222528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.10652 -37.10255 -35.83899 -34.64949 -32.70805 -30.37794 -28.85136 -27.39451 -26.92920 -26.15373 -22.96888 -22.40307 -21.76359 -21.49057 -19.21525 -16.83607 -16.35429 -16.20429 -15.84453 -15.44668 -15.12531 -14.56487 -14.30342 -13.93373 -13.86953 -13.46930 -13.29510 -12.95801 -12.44256 -12.21635 -12.07837 -12.01393 -11.68793 -11.29371 -11.23599 -11.19021 -10.84485 -10.77195 -10.71107 -10.47275 -10.40356 -10.27507 -10.02448 -9.84710 -9.13471 -8.85549 -8.20107 -8.12643 -6.13055 -4.15033 3.28551 3.33874 3.38713 3.82000 4.32383 4.35031 4.57377 4.64370 4.80887 4.92023 5.05894 5.16481 5.23609 5.24671 5.32773 5.42112 5.47829 5.62480 5.66622 5.68009 5.76986 5.77502 5.82349 5.96092 6.03667 6.06100 6.14289 6.16119 6.29323 6.35994 6.57434 6.67468 6.86746 7.08127 7.14656 7.41074 7.52739 7.76379 8.12692 8.54330 8.97776 9.50039 10.98396 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.004454 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.731203 B = 6284.851790 C = 6352.355943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 C -0.153 4.153 4 C -0.107 4.107 5 H 0.080 0.920 6 C 0.046 3.954 7 O -0.378 6.378 8 C 0.016 3.984 9 C 0.058 3.942 10 H 0.088 0.912 11 N -0.664 5.664 12 C 0.061 3.939 13 C 0.062 3.938 14 O -0.399 6.399 15 C 0.198 3.802 16 C -0.515 4.515 17 H 0.065 0.935 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.907 3.093 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 H 0.095 0.905 25 H 0.032 0.968 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.357 0.643 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.047 0.953 40 H 0.003 0.997 41 H 0.006 0.994 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 9.521 15.258 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.210 4.210 4 C -0.127 4.127 5 H 0.098 0.902 6 C -0.031 4.031 7 O -0.296 6.296 8 C -0.062 4.062 9 C -0.053 4.053 10 H 0.106 0.894 11 N -0.298 5.298 12 C -0.068 4.068 13 C -0.016 4.016 14 O -0.319 6.319 15 C 0.124 3.876 16 C -0.553 4.553 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.734 3.266 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 H 0.114 0.886 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.179 0.821 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.302 9.864 15.399 18.583 hybrid contribution 0.756 -0.903 -0.943 1.509 sum 4.058 8.961 14.456 17.486 Atomic orbital electron populations 1.22014 0.94372 1.04349 0.99755 1.20785 0.96998 0.94003 0.96810 1.21964 1.00494 0.97062 1.01511 1.22602 0.95012 0.95227 0.99823 0.90180 1.23570 0.94217 0.86241 0.99077 1.89096 1.56975 1.17139 1.66428 1.24273 0.89632 0.93613 0.98708 1.22953 0.93396 0.94734 0.94216 0.89412 1.60802 1.26645 1.37279 1.05065 1.22045 0.96520 0.91120 0.97075 1.22292 0.92267 0.98403 0.88653 1.87781 1.33620 1.89420 1.21115 1.20164 0.94402 0.94518 0.78525 1.21039 0.93813 1.46594 0.93898 0.91672 1.24937 0.95893 0.95429 0.98159 1.69955 1.16447 1.48761 1.18533 0.86357 0.81572 0.78722 0.79960 1.20488 1.21056 1.19648 0.88636 0.94875 0.93793 0.90651 0.93168 0.92703 0.93173 0.92071 0.89468 0.89351 0.91717 0.82112 0.94629 0.90556 0.94181 0.93505 0.97871 0.97615 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.86 37.16 0.33 -1.41 16 2 C -0.07 -0.75 1.90 -90.62 -0.17 -0.92 16 3 C -0.15 -1.48 8.94 37.16 0.33 -1.15 16 4 C -0.11 -1.13 2.68 -89.05 -0.24 -1.37 16 5 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 6 C 0.05 0.49 6.09 37.94 0.23 0.73 16 7 O -0.38 -4.97 11.65 -35.23 -0.41 -5.38 16 8 C 0.02 0.20 7.31 37.94 0.28 0.48 16 9 C 0.06 0.66 3.18 -66.14 -0.21 0.45 16 10 H 0.09 0.93 7.83 -51.93 -0.41 0.53 16 11 N -0.66 -8.66 2.40 -105.06 -0.25 -8.91 16 12 C 0.06 0.84 5.93 -3.82 -0.02 0.81 16 13 C 0.06 1.08 6.28 37.16 0.23 1.32 16 14 O -0.40 -9.12 9.85 -35.23 -0.35 -9.47 16 15 C 0.20 5.33 5.69 36.00 0.20 5.53 16 16 C -0.52 -14.93 9.43 -34.44 -0.32 -15.26 16 17 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 20 Si 0.91 21.68 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.10 1.23 5.53 -51.93 -0.29 0.94 16 25 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.97 7.22 -51.93 -0.37 0.59 16 28 H 0.05 0.45 7.02 -51.93 -0.36 0.09 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.67 7.55 -51.93 -0.39 0.27 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 34 H 0.06 0.84 7.55 -51.93 -0.39 0.45 16 35 H 0.36 5.38 7.14 -39.29 -0.28 5.10 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.87 8.08 -51.93 -0.42 0.46 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 331.54 15.07 5.00 5.00 Total: -1.00 -29.86 331.54 -7.29 -37.15 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -7.54 Total: 0.17 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 0.54 Total: -9.26 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.48 Total: -34.86 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.76 Total: -14.84 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.86 -7.29 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699726964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.093 kcal (2) G-P(sol) polarization free energy of solvation -29.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds