Wall clock time and date at job start Mon Mar 30 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47335 * 2 1 4 4 C 1.52998 * 109.47036 * 120.00377 * 2 1 3 5 5 H 1.08997 * 110.56358 * 304.03856 * 4 2 1 6 6 C 1.54482 * 110.50952 * 181.36501 * 4 2 1 7 7 O 1.44423 * 104.80306 * 217.37739 * 6 4 2 8 8 C 1.44425 * 105.27608 * 40.51150 * 7 6 4 9 9 C 1.54486 * 104.80104 * 319.48708 * 8 7 6 10 10 H 1.08999 * 110.51392 * 265.33460 * 9 8 7 11 11 N 1.46904 * 110.50897 * 142.62382 * 9 8 7 12 12 C 1.46899 * 110.99743 * 90.35780 * 11 9 8 13 13 C 1.53005 * 109.46943 * 180.02562 * 12 11 9 14 14 O 1.42897 * 109.47021 * 65.00149 * 13 12 11 15 15 C 1.42903 * 113.99850 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47268 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00116 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00020 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00367 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99817 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47105 * 90.00368 * 20 18 16 22 22 H 1.48498 * 109.47129 * 210.00114 * 20 18 16 23 23 H 1.48500 * 109.46925 * 329.99941 * 20 18 16 24 24 H 1.08997 * 109.47605 * 186.06825 * 1 2 3 25 25 H 1.09007 * 109.46602 * 306.06746 * 1 2 3 26 26 H 1.09004 * 109.47033 * 66.06132 * 1 2 3 27 27 H 1.09003 * 109.47133 * 240.00444 * 2 1 3 28 28 H 1.08999 * 109.47276 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47469 * 300.00605 * 3 2 1 30 30 H 1.09005 * 109.47157 * 60.00148 * 3 2 1 31 31 H 1.09004 * 110.37309 * 336.20396 * 6 4 2 32 32 H 1.08997 * 110.37526 * 98.43588 * 6 4 2 33 33 H 1.09007 * 110.37501 * 200.66432 * 8 7 6 34 34 H 1.08993 * 110.37634 * 78.31824 * 8 7 6 35 35 H 1.00902 * 111.00104 * 326.40485 * 11 9 8 36 36 H 1.08994 * 109.47411 * 300.00199 * 12 11 9 37 37 H 1.09007 * 109.47304 * 60.00277 * 12 11 9 38 38 H 1.09002 * 109.47252 * 185.00597 * 13 12 11 39 39 H 1.09005 * 109.47116 * 304.99789 * 13 12 11 40 40 H 1.09002 * 109.46906 * 299.99796 * 15 14 13 41 41 H 1.08998 * 109.47503 * 59.99628 * 15 14 13 42 42 H 0.96995 * 120.00486 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6290 -0.2647 2.1495 6 6 3.5841 -0.7056 1.2908 7 8 3.9520 -1.9950 1.8272 8 6 3.0512 -2.9370 1.2051 9 6 1.6812 -2.2230 1.1916 10 1 1.0929 -2.5089 2.0635 11 7 0.9525 -2.5311 -0.0462 12 6 0.1120 -3.7242 0.1208 13 6 -0.6289 -4.0131 -1.1863 14 8 0.3149 -4.3549 -2.2034 15 6 -0.2766 -4.6443 -3.4716 16 6 0.8045 -4.9894 -4.4631 17 1 1.8398 -4.9873 -4.1557 18 6 0.4719 -5.3076 -5.7628 19 7 -0.7887 -5.3096 -6.1374 20 14 1.8122 -5.7346 -6.9920 21 1 2.0645 -7.1977 -6.9609 22 1 1.3788 -5.3359 -8.3553 23 1 3.0586 -5.0096 -6.6370 24 1 -0.3634 -1.0218 0.1086 25 1 -0.3633 0.6051 0.8308 26 1 -0.3633 0.4170 -0.9393 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9896 -0.5828 0.2865 32 1 3.9381 0.0933 1.9424 33 1 2.9954 -3.8536 1.7926 34 1 3.3747 -3.1564 0.1877 35 1 1.5882 -2.6422 -0.8219 36 1 0.7394 -4.5774 0.3786 37 1 -0.6109 -3.5508 0.9180 38 1 -1.3190 -4.8436 -1.0370 39 1 -1.1869 -3.1276 -1.4911 40 1 -0.9595 -5.4878 -3.3700 41 1 -0.8269 -3.7718 -3.8236 42 1 -1.0227 -5.5338 -7.0516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699726964.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:04 Heat of formation + Delta-G solvation = -121.109833 kcal Electronic energy + Delta-G solvation = -20089.531479 eV Core-core repulsion = 17068.490744 eV Total energy + Delta-G solvation = -3021.040734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.04505 -38.74219 -36.90177 -35.80607 -34.81321 -31.57745 -29.91964 -29.16108 -27.80638 -27.51091 -24.51962 -23.88141 -22.85239 -22.63046 -20.12351 -18.66178 -17.67976 -17.52463 -17.02622 -16.85824 -16.39883 -16.29466 -15.65360 -15.19414 -15.00755 -14.69921 -14.40980 -14.16334 -13.74072 -13.42530 -13.26637 -13.18536 -12.88238 -12.84478 -12.71887 -12.54892 -12.34985 -12.12603 -12.10942 -11.80991 -11.41331 -11.33536 -11.26489 -11.16467 -10.86879 -10.79636 -10.21552 -9.16850 -8.32223 -6.44336 1.39695 1.41986 1.53902 2.34064 2.86327 3.01980 3.23301 3.36462 3.67044 3.75786 3.92122 4.10615 4.24805 4.30095 4.37577 4.42872 4.49107 4.54730 4.60595 4.71513 4.79254 4.84909 4.87689 4.89051 4.92625 4.97135 5.01723 5.09382 5.19834 5.20629 5.31178 5.44406 5.54697 5.67039 5.74201 5.89865 5.96282 6.12334 6.35094 6.54138 6.82603 7.27763 8.80027 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.004454 C = 0.004407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.731203 B = 6284.851790 C = 6352.355943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.150 4.150 4 C -0.100 4.100 5 H 0.095 0.905 6 C 0.044 3.956 7 O -0.394 6.394 8 C 0.016 3.984 9 C 0.062 3.938 10 H 0.103 0.897 11 N -0.665 5.665 12 C 0.072 3.928 13 C 0.054 3.946 14 O -0.407 6.407 15 C 0.213 3.787 16 C -0.546 4.546 17 H 0.062 0.938 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.980 3.020 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.265 1.265 24 H 0.085 0.915 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.344 0.656 36 H 0.035 0.965 37 H 0.108 0.892 38 H 0.046 0.954 39 H 0.044 0.956 40 H -0.016 1.016 41 H -0.015 1.015 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 9.986 16.205 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 C -0.207 4.207 4 C -0.119 4.119 5 H 0.113 0.887 6 C -0.033 4.033 7 O -0.313 6.313 8 C -0.062 4.062 9 C -0.049 4.049 10 H 0.121 0.879 11 N -0.297 5.297 12 C -0.057 4.057 13 C -0.023 4.023 14 O -0.327 6.327 15 C 0.138 3.862 16 C -0.584 4.584 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.803 3.197 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.189 1.189 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.163 0.837 36 H 0.053 0.947 37 H 0.126 0.874 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.108 10.338 16.378 19.798 hybrid contribution 0.450 -1.013 -1.173 1.613 sum 4.557 9.325 15.205 18.410 Atomic orbital electron populations 1.21961 0.94825 1.03791 0.99571 1.20714 0.96516 0.94874 0.96234 1.21930 1.00959 0.95953 1.01884 1.22565 0.94844 0.94551 0.99953 0.88674 1.23691 0.94365 0.85933 0.99267 1.89081 1.57479 1.18082 1.66645 1.24266 0.89902 0.94051 0.97991 1.23002 0.92941 0.95267 0.93681 0.87867 1.60843 1.26584 1.36788 1.05459 1.22003 0.96956 0.91437 0.95264 1.22608 0.92341 0.98418 0.88934 1.87746 1.34972 1.89469 1.20558 1.19754 0.93516 0.92680 0.80258 1.21380 0.94059 1.47772 0.95182 0.92021 1.25924 0.98502 0.94646 1.00040 1.70062 1.18573 1.48960 1.19383 0.85223 0.78370 0.78874 0.77191 1.19353 1.20013 1.18905 0.89653 0.93535 0.95129 0.92954 0.92448 0.93234 0.91900 0.92632 0.87521 0.88513 0.93280 0.83667 0.94679 0.87420 0.93618 0.93768 0.99859 0.99773 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.86 71.98 0.64 -2.61 16 2 C -0.06 -1.36 1.90 -10.80 -0.02 -1.39 16 3 C -0.15 -2.67 8.94 71.98 0.64 -2.03 16 4 C -0.10 -1.91 2.68 -9.78 -0.03 -1.93 16 5 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 6 C 0.04 0.87 6.09 72.49 0.44 1.31 16 7 O -0.39 -9.80 11.65 -148.98 -1.74 -11.54 16 8 C 0.02 0.38 7.31 72.49 0.53 0.91 16 9 C 0.06 1.29 3.18 45.93 0.15 1.44 16 10 H 0.10 1.88 7.83 -2.39 -0.02 1.86 16 11 N -0.66 -16.85 2.40 -486.32 -1.17 -18.02 16 12 C 0.07 1.88 5.93 86.31 0.51 2.39 16 13 C 0.05 1.90 6.28 71.98 0.45 2.35 16 14 O -0.41 -19.04 9.85 -148.98 -1.47 -20.51 16 15 C 0.21 11.84 5.69 71.23 0.41 12.25 16 16 C -0.55 -32.25 9.43 25.60 0.24 -32.01 16 17 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 18 C 0.01 0.43 5.46 84.66 0.46 0.89 16 19 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 20 Si 0.98 44.24 29.54 68.60 2.03 46.27 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H 0.08 2.10 5.53 -2.39 -0.01 2.09 16 25 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.05 1.36 7.22 -2.39 -0.02 1.34 16 28 H 0.06 0.93 7.02 -2.39 -0.02 0.92 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.06 1.16 7.55 -2.39 -0.02 1.15 16 32 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.05 1.28 7.55 -2.39 -0.02 1.27 16 35 H 0.34 10.49 7.14 -89.69 -0.64 9.85 16 36 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 2.17 8.08 -2.38 -0.02 2.15 16 38 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 1.57 8.14 -2.38 -0.02 1.56 16 40 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 41 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -64.17 331.54 2.70 -61.46 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.33 Total: 16.35 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 4.42 Total: -18.43 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -0.88 Total: -73.60 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -3.20 Total: -32.05 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -64.17 2.70 -61.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699726964.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.645 kcal (2) G-P(sol) polarization free energy of solvation -64.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds