Wall clock time and date at job start Mon Mar 30 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47362 * 2 1 4 4 H 1.09007 * 109.46577 * 54.27941 * 3 2 1 5 5 C 1.50697 * 109.47291 * 174.28320 * 3 2 1 6 6 H 1.07997 * 119.99797 * 120.00582 * 5 3 2 7 7 C 1.37871 * 119.99903 * 300.00328 * 5 3 2 8 8 N 1.31512 * 120.00432 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99801 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47120 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47140 * 119.99911 * 9 7 5 12 12 H 1.48503 * 109.46853 * 239.99655 * 9 7 5 13 13 N 1.46901 * 109.47092 * 294.29051 * 3 2 1 14 14 C 1.46898 * 111.00297 * 156.48722 * 13 3 2 15 15 C 1.52996 * 109.47396 * 173.69385 * 14 13 3 16 16 C 1.53002 * 109.52500 * 300.00193 * 15 14 13 17 17 O 1.42901 * 109.46825 * 60.12262 * 16 15 14 18 18 C 1.53177 * 109.57350 * 179.84184 * 15 14 13 19 19 C 1.53175 * 109.03706 * 297.04188 * 18 15 14 20 20 C 1.53089 * 109.16698 * 303.02361 * 19 18 15 21 21 O 1.42900 * 109.41491 * 57.60699 * 20 19 18 22 22 C 1.42902 * 114.09642 * 298.84066 * 21 20 19 23 23 H 1.08995 * 109.47254 * 177.32714 * 1 2 3 24 24 H 1.09001 * 109.46798 * 297.32266 * 1 2 3 25 25 H 1.09001 * 109.47203 * 57.31976 * 1 2 3 26 26 H 1.09000 * 109.47184 * 240.00871 * 2 1 3 27 27 H 1.09000 * 109.47245 * 120.00248 * 2 1 3 28 28 H 0.96998 * 120.00297 * 179.97438 * 8 7 5 29 29 H 1.00891 * 111.00327 * 32.52989 * 13 3 2 30 30 H 1.09009 * 109.46947 * 53.69461 * 14 13 3 31 31 H 1.09000 * 109.47107 * 293.70182 * 14 13 3 32 32 H 1.08995 * 109.46948 * 180.12192 * 16 15 14 33 33 H 1.08994 * 109.46898 * 300.12322 * 16 15 14 34 34 H 0.96701 * 113.99204 * 179.97438 * 17 16 15 35 35 H 1.08993 * 109.54758 * 56.91472 * 18 15 14 36 36 H 1.09007 * 109.53971 * 177.18029 * 18 15 14 37 37 H 1.09003 * 109.52465 * 183.10999 * 19 18 15 38 38 H 1.09008 * 109.57193 * 62.96069 * 19 18 15 39 39 H 1.09001 * 109.47952 * 297.62047 * 20 19 18 40 40 H 1.09004 * 109.48142 * 177.59177 * 20 19 18 41 41 H 1.08993 * 109.48413 * 301.17422 * 22 21 20 42 42 H 1.09007 * 109.47884 * 181.14202 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9850 0.8344 5 6 3.5404 1.4449 0.1415 6 1 4.1547 1.8863 -0.6292 7 6 4.1286 0.8835 1.2550 8 7 3.3805 0.3465 2.1938 9 14 5.9884 0.8871 1.4307 10 1 6.5961 1.5472 0.2475 11 1 6.3679 1.6276 2.6607 12 1 6.4794 -0.5113 1.5235 13 7 1.6661 2.0941 -1.2624 14 6 1.6198 3.5542 -1.1077 15 6 1.3831 4.2044 -2.4723 16 6 2.5221 3.8287 -3.4222 17 8 2.5656 2.4087 -3.5756 18 6 1.3304 5.7269 -2.3130 19 6 0.1393 6.0953 -1.4231 20 6 -1.1429 5.5310 -2.0404 21 8 -1.0154 4.1155 -2.1893 22 6 0.0527 3.7131 -3.0491 23 1 -0.3633 -1.0265 -0.0479 24 1 -0.3633 0.4717 0.9130 25 1 -0.3634 0.5549 -0.8650 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.7943 -0.0488 2.9770 29 1 0.7866 1.7388 -1.6061 30 1 2.5661 3.9062 -0.6967 31 1 0.8079 3.8223 -0.4316 32 1 2.3537 4.2941 -4.3933 33 1 3.4687 4.1789 -3.0107 34 1 3.2654 2.0982 -4.1664 35 1 2.2531 6.0774 -1.8507 36 1 1.2118 6.1920 -3.2917 37 1 0.0614 7.1800 -1.3493 38 1 0.2818 5.6720 -0.4287 39 1 -1.3068 5.9860 -3.0172 40 1 -1.9883 5.7534 -1.3892 41 1 -0.0955 4.1442 -4.0391 42 1 0.0687 2.6258 -3.1246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700942992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:09 Heat of formation + Delta-G solvation = -100.174785 kcal Electronic energy + Delta-G solvation = -21206.580869 eV Core-core repulsion = 18186.447946 eV Total energy + Delta-G solvation = -3020.132922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.83266 -36.57596 -35.61387 -33.89199 -32.27342 -31.41817 -30.04451 -26.55834 -25.78399 -24.98391 -24.07706 -22.32228 -21.62481 -19.34983 -18.40216 -16.74859 -16.17169 -15.95092 -15.79544 -14.96951 -14.84523 -14.58603 -13.90898 -13.85803 -13.28957 -13.09912 -12.68237 -12.52055 -12.40875 -12.10218 -11.77608 -11.46600 -11.17196 -11.05185 -10.91194 -10.74540 -10.59081 -10.47553 -10.35728 -10.05853 -9.81480 -9.47831 -9.44545 -9.29406 -9.09080 -8.84145 -8.21993 -6.77285 -5.83783 -3.86779 3.36315 3.44016 3.48551 4.07599 4.53130 4.58595 4.84338 4.94896 5.05144 5.22329 5.33746 5.43437 5.47465 5.57018 5.63966 5.75032 5.82370 5.85237 5.88701 6.00366 6.15469 6.17236 6.33348 6.35341 6.41004 6.48933 6.60267 6.66637 6.78007 7.03288 7.27171 7.39532 7.40105 7.71935 7.95439 8.08536 8.29769 8.56352 8.61336 9.04787 9.23164 9.77480 11.21267 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.006832 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.739891 B = 4097.285675 C = 4465.299896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.219 3.781 4 H -0.007 1.007 5 C -0.480 4.480 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.286 1.286 13 N -0.658 5.658 14 C 0.090 3.910 15 C -0.091 4.091 16 C 0.104 3.896 17 O -0.525 6.525 18 C -0.110 4.110 19 C -0.157 4.157 20 C 0.061 3.939 21 O -0.380 6.380 22 C 0.076 3.924 23 H 0.034 0.966 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.095 0.905 28 H 0.256 0.744 29 H 0.315 0.685 30 H 0.066 0.934 31 H 0.017 0.983 32 H 0.023 0.977 33 H 0.040 0.960 34 H 0.360 0.640 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.039 0.961 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 9.649 -10.414 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C 0.111 3.889 4 H 0.011 0.989 5 C -0.519 4.519 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.290 5.290 14 C -0.040 4.040 15 C -0.092 4.092 16 C 0.025 3.975 17 O -0.327 6.327 18 C -0.148 4.148 19 C -0.194 4.194 20 C -0.016 4.016 21 O -0.298 6.298 22 C -0.001 4.001 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.134 0.866 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.058 0.942 34 H 0.204 0.796 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.057 0.943 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.708 9.452 -9.970 14.877 hybrid contribution 0.949 0.392 0.238 1.054 sum -4.760 9.843 -9.732 14.637 Atomic orbital electron populations 1.21867 0.99721 0.99212 0.99797 1.21708 0.91118 1.00511 1.02703 1.19091 0.95096 0.89962 0.84731 0.98922 1.21271 0.91559 1.35475 1.03598 0.92156 1.24973 0.97700 0.96098 0.96103 1.69895 1.34284 1.40144 1.09614 0.86553 0.86387 0.77456 0.77602 1.19998 1.21477 1.21281 1.60582 1.35050 1.01548 1.31836 1.21646 0.99603 0.90950 0.91843 1.21304 0.95393 0.94329 0.98154 1.21782 0.96929 0.83420 0.95378 1.86878 1.56426 1.19335 1.70061 1.21550 0.98864 0.94830 0.99576 1.22209 0.95563 1.00722 1.00950 1.22514 0.97378 0.82300 0.99414 1.87967 1.51721 1.21487 1.68650 1.22595 0.85076 1.01336 0.91049 0.94709 0.94094 0.94436 0.94149 0.88629 0.93384 0.86650 0.91541 0.96479 0.95851 0.94178 0.79553 0.91228 0.92193 0.91299 0.90348 0.93816 0.89402 0.94280 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.79 37.16 0.36 -2.76 16 2 C -0.12 -3.02 5.37 -26.73 -0.14 -3.17 16 3 C 0.22 5.65 2.02 -68.86 -0.14 5.51 16 4 H -0.01 -0.20 7.88 -51.93 -0.41 -0.60 16 5 C -0.48 -13.51 8.45 -34.44 -0.29 -13.80 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.43 5.29 -17.82 -0.09 1.34 16 8 N -0.90 -26.31 11.29 55.43 0.63 -25.69 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 N -0.66 -14.38 4.04 -107.95 -0.44 -14.82 16 14 C 0.09 1.76 4.02 -3.83 -0.02 1.75 16 15 C -0.09 -1.39 0.52 -154.37 -0.08 -1.47 16 16 C 0.10 1.51 5.92 37.16 0.22 1.73 16 17 O -0.53 -8.54 10.90 -35.23 -0.38 -8.92 16 18 C -0.11 -1.39 4.81 -26.55 -0.13 -1.52 16 19 C -0.16 -1.90 5.77 -26.59 -0.15 -2.05 16 20 C 0.06 0.74 6.84 37.20 0.25 1.00 16 21 O -0.38 -5.95 10.19 -35.23 -0.36 -6.31 16 22 C 0.08 1.14 5.09 37.21 0.19 1.33 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.04 0.74 6.38 -51.93 -0.33 0.40 16 26 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.10 2.64 5.94 -51.93 -0.31 2.34 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.31 6.69 4.77 -39.30 -0.19 6.50 16 30 H 0.07 1.44 7.84 -51.92 -0.41 1.04 16 31 H 0.02 0.35 6.15 -51.93 -0.32 0.04 16 32 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.36 4.49 9.12 45.56 0.42 4.90 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.10 6.63 -51.92 -0.34 0.76 16 39 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.11 1.77 6.23 -51.92 -0.32 1.45 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -30.64 317.80 -7.21 -37.85 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.41 Total: 8.29 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.02 Total: -12.10 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.19 Total: -40.51 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.74 Total: -15.23 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.64 -7.21 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700942992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.320 kcal (2) G-P(sol) polarization free energy of solvation -30.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds