Wall clock time and date at job start Mon Mar 30 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47362 * 2 1 4 4 H 1.09007 * 109.46577 * 54.27941 * 3 2 1 5 5 C 1.50697 * 109.47291 * 174.28320 * 3 2 1 6 6 H 1.07997 * 119.99797 * 120.00582 * 5 3 2 7 7 C 1.37871 * 119.99903 * 300.00328 * 5 3 2 8 8 N 1.31512 * 120.00432 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99801 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47120 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47140 * 119.99911 * 9 7 5 12 12 H 1.48503 * 109.46853 * 239.99655 * 9 7 5 13 13 N 1.46901 * 109.47092 * 294.29051 * 3 2 1 14 14 C 1.46898 * 111.00297 * 156.48722 * 13 3 2 15 15 C 1.52996 * 109.47396 * 173.69385 * 14 13 3 16 16 C 1.53002 * 109.52500 * 300.00193 * 15 14 13 17 17 O 1.42901 * 109.46825 * 60.12262 * 16 15 14 18 18 C 1.53177 * 109.57350 * 179.84184 * 15 14 13 19 19 C 1.53175 * 109.03706 * 297.04188 * 18 15 14 20 20 C 1.53089 * 109.16698 * 303.02361 * 19 18 15 21 21 O 1.42900 * 109.41491 * 57.60699 * 20 19 18 22 22 C 1.42902 * 114.09642 * 298.84066 * 21 20 19 23 23 H 1.08995 * 109.47254 * 177.32714 * 1 2 3 24 24 H 1.09001 * 109.46798 * 297.32266 * 1 2 3 25 25 H 1.09001 * 109.47203 * 57.31976 * 1 2 3 26 26 H 1.09000 * 109.47184 * 240.00871 * 2 1 3 27 27 H 1.09000 * 109.47245 * 120.00248 * 2 1 3 28 28 H 0.96998 * 120.00297 * 179.97438 * 8 7 5 29 29 H 1.00891 * 111.00327 * 32.52989 * 13 3 2 30 30 H 1.09009 * 109.46947 * 53.69461 * 14 13 3 31 31 H 1.09000 * 109.47107 * 293.70182 * 14 13 3 32 32 H 1.08995 * 109.46948 * 180.12192 * 16 15 14 33 33 H 1.08994 * 109.46898 * 300.12322 * 16 15 14 34 34 H 0.96701 * 113.99204 * 179.97438 * 17 16 15 35 35 H 1.08993 * 109.54758 * 56.91472 * 18 15 14 36 36 H 1.09007 * 109.53971 * 177.18029 * 18 15 14 37 37 H 1.09003 * 109.52465 * 183.10999 * 19 18 15 38 38 H 1.09008 * 109.57193 * 62.96069 * 19 18 15 39 39 H 1.09001 * 109.47952 * 297.62047 * 20 19 18 40 40 H 1.09004 * 109.48142 * 177.59177 * 20 19 18 41 41 H 1.08993 * 109.48413 * 301.17422 * 22 21 20 42 42 H 1.09007 * 109.47884 * 181.14202 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9850 0.8344 5 6 3.5404 1.4449 0.1415 6 1 4.1547 1.8863 -0.6292 7 6 4.1286 0.8835 1.2550 8 7 3.3805 0.3465 2.1938 9 14 5.9884 0.8871 1.4307 10 1 6.5961 1.5472 0.2475 11 1 6.3679 1.6276 2.6607 12 1 6.4794 -0.5113 1.5235 13 7 1.6661 2.0941 -1.2624 14 6 1.6198 3.5542 -1.1077 15 6 1.3831 4.2044 -2.4723 16 6 2.5221 3.8287 -3.4222 17 8 2.5656 2.4087 -3.5756 18 6 1.3304 5.7269 -2.3130 19 6 0.1393 6.0953 -1.4231 20 6 -1.1429 5.5310 -2.0404 21 8 -1.0154 4.1155 -2.1893 22 6 0.0527 3.7131 -3.0491 23 1 -0.3633 -1.0265 -0.0479 24 1 -0.3633 0.4717 0.9130 25 1 -0.3634 0.5549 -0.8650 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 3.7943 -0.0488 2.9770 29 1 0.7866 1.7388 -1.6061 30 1 2.5661 3.9062 -0.6967 31 1 0.8079 3.8223 -0.4316 32 1 2.3537 4.2941 -4.3933 33 1 3.4687 4.1789 -3.0107 34 1 3.2654 2.0982 -4.1664 35 1 2.2531 6.0774 -1.8507 36 1 1.2118 6.1920 -3.2917 37 1 0.0614 7.1800 -1.3493 38 1 0.2818 5.6720 -0.4287 39 1 -1.3068 5.9860 -3.0172 40 1 -1.9883 5.7534 -1.3892 41 1 -0.0955 4.1442 -4.0391 42 1 0.0687 2.6258 -3.1246 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700942992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:08 Heat of formation + Delta-G solvation = -122.449142 kcal Electronic energy + Delta-G solvation = -21207.546757 eV Core-core repulsion = 18186.447946 eV Total energy + Delta-G solvation = -3021.098811 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.01081 -38.03612 -37.21864 -35.18709 -34.08232 -32.97109 -31.58712 -28.56269 -26.90948 -26.13365 -25.76274 -24.16087 -22.70056 -21.35465 -19.64850 -18.35462 -17.89183 -17.14334 -16.90142 -16.71301 -16.37611 -16.03358 -15.53222 -15.15739 -14.77632 -14.59789 -14.22095 -13.91180 -13.74488 -13.53236 -13.34518 -13.08438 -12.96643 -12.78161 -12.48843 -12.21121 -12.07974 -11.98394 -11.92680 -11.57256 -11.47295 -11.34832 -10.94391 -10.88645 -10.53905 -10.39140 -10.24254 -8.65124 -8.01256 -6.13367 1.39645 1.41039 1.53182 2.45631 3.02967 3.22061 3.47662 3.65541 3.82222 4.00422 4.07194 4.25729 4.29610 4.45664 4.52461 4.56383 4.58888 4.62048 4.70413 4.74761 4.78227 4.81725 4.89931 4.99713 5.01759 5.07065 5.16824 5.20286 5.27570 5.35878 5.39687 5.43293 5.65509 5.80536 5.95650 6.35124 6.44503 6.65683 7.03593 7.16680 7.27699 7.55742 9.01579 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.006832 C = 0.006269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.739891 B = 4097.285675 C = 4465.299896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C 0.225 3.775 4 H -0.049 1.049 5 C -0.496 4.496 6 H 0.050 0.950 7 C 0.003 3.997 8 N -0.925 5.925 9 Si 0.957 3.043 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.280 1.280 13 N -0.648 5.648 14 C 0.096 3.904 15 C -0.087 4.087 16 C 0.103 3.897 17 O -0.552 6.552 18 C -0.108 4.108 19 C -0.155 4.155 20 C 0.055 3.945 21 O -0.407 6.407 22 C 0.081 3.919 23 H 0.059 0.941 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.258 0.742 29 H 0.320 0.680 30 H 0.036 0.964 31 H 0.002 0.998 32 H 0.060 0.940 33 H 0.029 0.971 34 H 0.375 0.625 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 10.859 -12.291 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C 0.116 3.884 4 H -0.032 1.032 5 C -0.535 4.535 6 H 0.068 0.932 7 C -0.194 4.194 8 N -0.566 5.566 9 Si 0.783 3.217 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.206 1.206 13 N -0.280 5.280 14 C -0.034 4.034 15 C -0.088 4.088 16 C 0.025 3.975 17 O -0.356 6.356 18 C -0.145 4.145 19 C -0.193 4.193 20 C -0.021 4.021 21 O -0.326 6.326 22 C 0.004 3.996 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.055 0.945 31 H 0.020 0.980 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.222 0.778 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.838 10.672 -11.868 16.995 hybrid contribution 0.958 0.047 0.835 1.272 sum -4.879 10.719 -11.033 16.138 Atomic orbital electron populations 1.21722 0.96744 1.00977 0.99941 1.21532 0.93790 0.99254 1.00912 1.18893 0.93992 0.90498 0.84988 1.03196 1.21467 0.92729 1.35663 1.03633 0.93195 1.25738 1.02288 0.95677 0.95733 1.70034 1.36076 1.40518 1.09962 0.85523 0.80858 0.77630 0.77661 1.19386 1.21013 1.20627 1.60540 1.35279 1.02833 1.29319 1.21584 0.97349 0.89685 0.94755 1.21295 0.96302 0.95960 0.95268 1.21851 0.95984 0.82882 0.96790 1.86818 1.57383 1.20510 1.70911 1.21573 0.98982 0.92651 1.01338 1.22203 0.95519 1.02376 0.99201 1.22749 0.97637 0.80626 1.01083 1.87929 1.51815 1.23813 1.69048 1.22501 0.84544 1.00347 0.92187 0.92215 0.94965 0.93081 0.94500 0.91628 0.93297 0.86095 0.94539 0.98026 0.92197 0.95295 0.77816 0.91580 0.89044 0.88374 0.93384 0.91198 0.88358 0.91504 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 9.79 71.98 0.70 -5.02 16 2 C -0.12 -5.91 5.37 30.59 0.16 -5.75 16 3 C 0.22 12.08 2.02 44.17 0.09 12.17 16 4 H -0.05 -3.02 7.88 -2.38 -0.02 -3.04 16 5 C -0.50 -28.79 8.45 25.60 0.22 -28.57 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.00 0.15 5.29 84.65 0.45 0.60 16 8 N -0.92 -55.60 11.29 21.44 0.24 -55.35 16 9 Si 0.96 45.63 29.54 68.60 2.03 47.65 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 N -0.65 -29.07 4.04 -495.43 -2.00 -31.08 16 14 C 0.10 3.90 4.02 86.30 0.35 4.24 16 15 C -0.09 -2.57 0.52 -52.09 -0.03 -2.59 16 16 C 0.10 2.83 5.92 71.98 0.43 3.25 16 17 O -0.55 -17.41 10.90 -148.98 -1.62 -19.03 16 18 C -0.11 -2.47 4.81 30.71 0.15 -2.32 16 19 C -0.16 -3.47 5.77 30.68 0.18 -3.29 16 20 C 0.06 1.21 6.84 72.01 0.49 1.70 16 21 O -0.41 -12.18 10.19 -148.98 -1.52 -13.69 16 22 C 0.08 2.28 5.09 72.01 0.37 2.64 16 23 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.98 6.38 -2.39 -0.02 1.97 16 26 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 3.75 5.94 -2.39 -0.01 3.73 16 28 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.32 13.77 4.77 -89.70 -0.43 13.34 16 30 H 0.04 1.66 7.84 -2.38 -0.02 1.64 16 31 H 0.00 0.07 6.15 -2.39 -0.01 0.06 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.38 8.92 9.12 -74.06 -0.68 8.25 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.36 6.63 -2.38 -0.02 1.34 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.09 2.76 6.23 -2.38 -0.01 2.74 16 Total: -1.00 -68.12 317.80 0.58 -67.55 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: -0.10 Total: 26.88 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 3.55 Total: -22.93 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -1.76 Total: -86.43 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -3.14 Total: -32.73 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -68.12 0.58 -67.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700942992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.902 kcal (2) G-P(sol) polarization free energy of solvation -68.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds