Wall clock time and date at job start Mon Mar 30 2020 04:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.48534 * 110.99554 * 2 1 4 4 C 1.55096 * 103.28380 * 200.33242 * 3 2 1 5 5 C 1.54602 * 102.84498 * 37.30676 * 4 3 2 6 6 O 1.42908 * 110.30573 * 97.11369 * 5 4 3 7 7 C 1.52993 * 110.31065 * 219.18398 * 5 4 3 8 8 N 1.46905 * 109.47039 * 178.61314 * 7 5 4 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.46943 * 180.02562 * 9 8 7 11 11 O 1.21292 * 120.00024 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.37102 * 120.00095 * 179.97438 * 12 10 9 14 14 H 1.08004 * 119.99386 * 359.97438 * 13 12 10 15 15 C 1.38941 * 120.00393 * 179.97438 * 13 12 10 16 16 N 1.31416 * 119.99786 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00292 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47100 * 90.00207 * 17 15 13 19 19 H 1.48501 * 109.47251 * 210.00227 * 17 15 13 20 20 H 1.48503 * 109.46881 * 330.00341 * 17 15 13 21 21 C 1.47906 * 110.99732 * 242.60854 * 2 1 3 22 22 H 1.09002 * 109.46706 * 177.39270 * 1 2 3 23 23 H 1.09003 * 109.47055 * 297.39100 * 1 2 3 24 24 H 1.08997 * 109.47154 * 57.39913 * 1 2 3 25 25 H 1.08996 * 110.67055 * 318.71778 * 3 2 1 26 26 H 1.08998 * 110.66230 * 81.67842 * 3 2 1 27 27 H 1.08994 * 110.71086 * 279.00239 * 4 3 2 28 28 H 1.08994 * 110.81048 * 155.66266 * 4 3 2 29 29 H 0.96695 * 113.99936 * 181.38826 * 6 5 4 30 30 H 1.09001 * 109.47393 * 58.61596 * 7 5 4 31 31 H 1.08998 * 109.47408 * 298.61241 * 7 5 4 32 32 H 1.00901 * 110.99869 * 56.04956 * 8 7 5 33 33 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 34 34 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 35 35 H 0.96997 * 120.00713 * 359.97438 * 12 10 9 36 36 H 0.97001 * 119.99428 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.91832 * 26.48672 * 21 2 1 38 38 H 1.09000 * 109.91440 * 265.19324 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4504 1.2123 -0.5245 5 6 3.2983 0.1054 -1.5931 6 8 3.1880 0.6847 -2.8949 7 6 4.4896 -0.8529 -1.5384 8 7 4.3102 -1.9148 -2.5375 9 6 5.4375 -2.8563 -2.5133 10 6 5.2188 -3.9284 -3.5496 11 8 4.2217 -3.9102 -4.2400 12 7 6.1307 -4.9080 -3.7085 13 6 5.9316 -5.8837 -4.6509 14 1 5.0438 -5.8674 -5.2656 15 6 6.8719 -6.8933 -4.8150 16 7 7.9520 -6.9133 -4.0667 17 14 6.6003 -8.2230 -6.0986 18 1 7.1995 -7.7959 -7.3884 19 1 7.2420 -9.4842 -5.6482 20 1 5.1433 -8.4461 -6.2794 21 6 1.9991 -0.6353 -1.2260 22 1 -0.3633 -1.0266 -0.0468 23 1 -0.3633 0.4728 0.9125 24 1 -0.3633 0.5537 -0.8657 25 1 1.4237 2.0205 -0.6728 26 1 2.0013 1.7987 1.0091 27 1 4.1137 0.8863 0.2766 28 1 3.8130 2.1362 -0.9750 29 1 3.0690 0.0383 -3.6041 30 1 4.5540 -1.2962 -0.5447 31 1 5.4071 -0.3046 -1.7517 32 1 4.1833 -1.5257 -3.4598 33 1 6.3618 -2.3221 -2.7333 34 1 5.5080 -3.3134 -1.5264 35 1 6.9280 -4.9229 -3.1561 36 1 8.6083 -7.6184 -4.1811 37 1 1.2758 -0.5402 -2.0359 38 1 2.2123 -1.6873 -1.0366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702627369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:30 Heat of formation + Delta-G solvation = -104.027109 kcal Electronic energy + Delta-G solvation = -19314.957161 eV Core-core repulsion = 16191.116846 eV Total energy + Delta-G solvation = -3123.840315 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.82053 -40.03646 -37.36922 -36.16629 -35.54763 -33.27407 -32.54616 -30.27954 -28.51337 -27.11913 -25.88253 -24.08850 -22.17802 -21.34934 -21.04805 -19.93699 -18.46563 -17.62920 -17.23450 -16.66456 -16.42893 -15.99958 -15.87380 -15.48132 -15.23171 -15.06646 -14.63575 -14.32194 -14.23839 -13.75740 -13.50648 -13.23602 -13.09240 -12.88786 -12.65083 -12.42315 -12.37044 -12.35115 -12.15053 -12.12510 -11.66891 -11.50811 -11.09820 -10.34132 -10.02013 -9.46418 -9.38919 -8.47080 -5.95929 1.38034 1.42077 1.54812 2.04447 2.28620 2.80843 2.97196 3.20295 3.27864 3.44564 3.63804 3.74037 3.87538 4.25991 4.31395 4.38265 4.43282 4.45947 4.49039 4.55597 4.67386 4.74047 4.76629 4.94471 4.95858 5.02091 5.06048 5.15375 5.40649 5.78183 5.84805 6.01247 6.04832 6.28604 6.59174 6.64039 7.11995 7.55566 8.10402 8.70321 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.044396 B = 0.003593 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.530895 B = 7790.319859 C = 7985.524544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.531 5.531 3 C 0.035 3.965 4 C -0.107 4.107 5 C 0.126 3.874 6 O -0.570 6.570 7 C 0.045 3.955 8 N -0.677 5.677 9 C 0.067 3.933 10 C 0.438 3.562 11 O -0.622 6.622 12 N -0.573 5.573 13 C -0.335 4.335 14 H 0.079 0.921 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.993 3.007 18 H -0.271 1.271 19 H -0.271 1.271 20 H -0.273 1.273 21 C 0.022 3.978 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.026 0.974 25 H 0.043 0.957 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.385 0.615 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.341 0.659 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.397 0.603 36 H 0.278 0.722 37 H 0.042 0.958 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.711 15.194 9.259 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.256 5.256 3 C -0.092 4.092 4 C -0.146 4.146 5 C 0.084 3.916 6 O -0.377 6.377 7 C -0.084 4.084 8 N -0.311 5.311 9 C -0.066 4.066 10 C 0.225 3.775 11 O -0.509 6.509 12 N -0.210 5.210 13 C -0.464 4.464 14 H 0.097 0.903 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.817 3.183 18 H -0.196 1.196 19 H -0.196 1.196 20 H -0.198 1.198 21 C -0.107 4.107 22 H 0.085 0.915 23 H 0.103 0.897 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.234 0.766 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.384 14.946 10.023 19.452 hybrid contribution 0.631 -0.520 -1.950 2.115 sum -6.753 14.426 8.073 17.858 Atomic orbital electron populations 1.22556 0.87089 1.02231 1.01478 1.64824 1.09109 1.15508 1.36137 1.23334 0.94495 0.89476 1.01909 1.22573 0.97600 0.97998 0.96381 1.22127 0.93003 0.92521 0.83914 1.86487 1.95799 1.38745 1.16710 1.22653 0.97012 0.91478 0.97265 1.60064 1.42400 1.18097 1.10519 1.21520 0.93343 0.92956 0.98758 1.20845 0.84196 0.85074 0.87375 1.90487 1.31040 1.78339 1.51021 1.41928 1.21273 1.23412 1.34362 1.19674 1.07108 1.04659 1.14975 0.90277 1.26040 0.94699 1.00372 1.00134 1.69675 1.10540 1.35452 1.40453 0.84928 0.78393 0.77196 0.77826 1.19598 1.19566 1.19772 1.23474 0.95665 1.00114 0.91442 0.91530 0.89699 0.95504 0.93900 0.88067 0.88035 0.89384 0.76564 0.88968 0.93516 0.83945 0.91497 0.87647 0.76961 0.91281 0.94003 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.40 127.69 1.20 1.47 16 2 N -0.53 -11.44 5.55 -908.80 -5.05 -16.49 16 3 C 0.04 0.63 6.56 86.71 0.57 1.20 16 4 C -0.11 -1.93 6.37 31.86 0.20 -1.73 16 5 C 0.13 2.81 1.15 -9.92 -0.01 2.80 16 6 O -0.57 -13.76 12.90 -148.98 -1.92 -15.68 16 7 C 0.05 1.05 4.59 86.30 0.40 1.45 16 8 N -0.68 -20.33 5.61 -517.93 -2.90 -23.23 16 9 C 0.07 2.22 6.17 85.56 0.53 2.75 16 10 C 0.44 20.56 7.82 87.66 0.69 21.24 16 11 O -0.62 -33.95 15.78 -3.07 -0.05 -34.00 16 12 N -0.57 -29.23 5.29 -306.99 -1.62 -30.85 16 13 C -0.33 -18.98 9.68 84.04 0.81 -18.16 16 14 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 15 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 16 N -0.92 -49.58 13.05 21.66 0.28 -49.29 16 17 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 21 C 0.02 0.53 5.96 86.44 0.52 1.04 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.03 0.49 8.00 -2.39 -0.02 0.47 16 25 H 0.04 0.79 7.96 -2.39 -0.02 0.77 16 26 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.10 1.56 7.86 -2.39 -0.02 1.54 16 28 H 0.09 1.51 8.08 -2.39 -0.02 1.50 16 29 H 0.38 8.52 7.52 -74.06 -0.56 7.97 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.34 10.55 6.87 -89.69 -0.62 9.94 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.40 19.21 7.90 -92.71 -0.73 18.48 16 36 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.04 1.09 7.55 -2.39 -0.02 1.07 16 38 H 0.08 2.32 7.46 -2.39 -0.02 2.31 16 Total: -1.00 -66.19 313.90 -4.69 -70.89 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -0.82 Total: 41.94 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 5.37 Total: 11.85 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -9.29 Total: -119.86 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -1.97 Total: -49.68 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -66.19 -4.69 -70.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702627369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.139 kcal (2) G-P(sol) polarization free energy of solvation -66.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds