Wall clock time and date at job start Mon Mar 30 2020 04:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46622 * 2 1 4 4 O 1.42901 * 109.47252 * 239.99799 * 2 1 3 5 5 N 1.46300 * 113.99989 * 84.99509 * 4 2 1 6 6 C 1.50699 * 109.47065 * 119.99527 * 2 1 3 7 7 O 1.21287 * 119.99658 * 103.89283 * 6 2 1 8 8 N 1.34772 * 120.00001 * 283.89642 * 6 2 1 9 9 C 1.47074 * 120.88455 * 4.13992 * 8 6 2 10 10 C 1.53693 * 108.28016 * 128.75768 * 9 8 6 11 11 N 1.46899 * 109.25844 * 54.07930 * 10 9 8 12 12 C 1.46900 * 111.00158 * 172.60974 * 11 10 9 13 13 C 1.50701 * 109.46937 * 294.30641 * 12 11 10 14 14 H 1.08001 * 120.00004 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99830 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99798 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99789 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47074 * 90.00152 * 17 15 13 19 19 H 1.48509 * 109.47062 * 209.99792 * 17 15 13 20 20 H 1.48491 * 109.47417 * 329.99654 * 17 15 13 21 21 C 1.46899 * 111.27065 * 296.75942 * 11 10 9 22 22 C 1.47079 * 120.87783 * 184.41980 * 8 6 2 23 23 H 1.09010 * 109.46797 * 181.45996 * 1 2 3 24 24 H 1.08999 * 109.47103 * 61.46615 * 1 2 3 25 25 H 1.08997 * 109.47164 * 301.46247 * 1 2 3 26 26 H 1.00900 * 111.00185 * 180.02562 * 5 4 2 27 27 H 1.00899 * 111.00384 * 303.95869 * 5 4 2 28 28 H 1.09004 * 109.62494 * 248.52465 * 9 8 6 29 29 H 1.08997 * 109.62911 * 9.10255 * 9 8 6 30 30 H 1.09004 * 109.64401 * 294.07649 * 10 9 8 31 31 H 1.08998 * 109.42282 * 173.94873 * 10 9 8 32 32 H 1.09000 * 109.46790 * 54.30505 * 12 11 10 33 33 H 1.08995 * 109.47118 * 174.30445 * 12 11 10 34 34 H 0.97000 * 119.99676 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.49521 * 303.14614 * 21 11 10 36 36 H 1.08994 * 109.49335 * 183.05981 * 21 11 10 37 37 H 1.09002 * 109.63419 * 350.88933 * 22 8 6 38 38 H 1.09004 * 109.63342 * 111.47674 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 7 2.0949 0.1794 -2.3520 6 6 2.0324 -0.7103 1.2305 7 8 2.4723 -1.8372 1.1431 8 7 1.9927 -0.0934 2.4281 9 6 1.3812 1.2364 2.5724 10 6 0.3708 1.1794 3.7291 11 7 1.0410 0.6706 4.9333 12 6 0.1604 0.7642 6.1053 13 6 -0.1054 2.2140 6.4193 14 1 0.3361 2.9883 5.8095 15 6 -0.9113 2.5518 7.4858 16 7 -1.4485 1.6088 8.2287 17 14 -1.2401 4.3488 7.8755 18 1 -2.4477 4.8020 7.1394 19 1 -1.4623 4.5062 9.3354 20 1 -0.0721 5.1669 7.4617 21 6 1.5135 -0.7067 4.7385 22 6 2.5653 -0.7295 3.6242 23 1 -0.3633 -1.0274 0.0262 24 1 -0.3633 0.4909 -0.9028 25 1 -0.3633 0.5364 0.8766 26 1 2.4347 -0.3405 -3.1472 27 1 1.2051 0.6096 -2.5551 28 1 2.1540 1.9727 2.7932 29 1 0.8680 1.5056 1.6492 30 1 -0.4529 0.5166 3.4639 31 1 -0.0151 2.1802 3.9230 32 1 -0.7822 0.2598 5.8927 33 1 0.6418 0.2896 6.9603 34 1 -2.0151 1.8465 8.9792 35 1 0.6739 -1.3431 4.4592 36 1 1.9564 -1.0736 5.6643 37 1 2.8354 -1.7608 3.3968 38 1 3.4497 -0.1785 3.9442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708775388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:25 Heat of formation + Delta-G solvation = -19.370509 kcal Electronic energy + Delta-G solvation = -19902.157378 eV Core-core repulsion = 16781.988049 eV Total energy + Delta-G solvation = -3120.169329 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21562 -37.80632 -36.76946 -34.51273 -32.67844 -32.04541 -30.57592 -29.24614 -28.29806 -25.82031 -24.01516 -23.24416 -21.89928 -20.63730 -18.75041 -17.81221 -17.04599 -16.41080 -15.94245 -15.54197 -15.28243 -14.76311 -14.49362 -14.45772 -14.04894 -13.76033 -13.64467 -13.42850 -12.68943 -12.57420 -12.21129 -11.93751 -11.78187 -11.31985 -11.13502 -11.10193 -10.94292 -10.78887 -10.65006 -10.56397 -9.92413 -9.56309 -9.31076 -9.30182 -8.55067 -8.46783 -7.37002 -6.09420 -4.11748 2.23384 2.63942 3.26789 3.30930 3.33997 3.37516 4.35771 4.40447 4.64284 4.73993 4.80595 4.95267 5.19480 5.26455 5.31640 5.36074 5.45397 5.50979 5.60414 5.71588 5.80682 5.89814 6.01522 6.25379 6.40158 6.40806 6.47636 6.60737 6.78801 7.18107 7.23966 7.47216 7.70619 7.97634 8.08089 8.20746 8.43431 8.95439 9.53019 11.01378 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.034521 B = 0.004574 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.915667 B = 6119.714310 C = 6619.441807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.069 3.931 3 H 0.098 0.902 4 O -0.210 6.210 5 N -0.674 5.674 6 C 0.523 3.477 7 O -0.533 6.533 8 N -0.603 5.603 9 C 0.101 3.899 10 C 0.050 3.950 11 N -0.535 5.535 12 C 0.193 3.807 13 C -0.511 4.511 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.898 3.102 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.041 3.959 22 C 0.119 3.881 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.368 0.632 27 H 0.339 0.661 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.026 0.974 31 H 0.098 0.902 32 H -0.009 1.009 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.027 0.973 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.673 -0.675 -16.424 16.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.007 3.993 3 H 0.116 0.884 4 O -0.223 6.223 5 N -0.241 5.241 6 C 0.308 3.692 7 O -0.409 6.409 8 N -0.338 5.338 9 C -0.022 4.022 10 C -0.079 4.079 11 N -0.260 5.260 12 C 0.068 3.932 13 C -0.549 4.549 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.726 3.274 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.089 4.089 22 C -0.003 4.003 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.101 0.899 26 H 0.182 0.818 27 H 0.149 0.851 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.117 0.883 32 H 0.009 0.991 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.800 -0.810 -15.817 16.549 hybrid contribution -1.906 0.067 -0.255 1.924 sum 2.895 -0.743 -16.073 16.348 Atomic orbital electron populations 1.22413 0.93808 1.03952 1.03610 1.21875 0.94674 0.97817 0.84925 0.88415 1.90853 1.88194 1.29027 1.14250 1.64401 1.31468 1.26964 1.01272 1.20071 0.78806 0.86337 0.83980 1.90690 1.46356 1.18307 1.85575 1.48112 1.58453 1.19580 1.07665 1.22287 0.97091 0.83492 0.99292 1.22413 0.93576 1.02293 0.89602 1.62076 1.41723 1.17816 1.04403 1.19734 0.89355 0.97661 0.86401 1.21133 1.28821 0.91773 1.13195 0.91774 1.24996 0.95836 0.97643 0.96070 1.69956 1.32890 1.32307 1.18500 0.86497 0.78558 0.84866 0.77494 1.20740 1.21243 1.19710 1.22413 0.96980 0.91523 0.97937 1.21793 0.96350 0.98871 0.83282 0.91204 0.91404 0.89860 0.81786 0.85092 0.90241 0.89970 0.95617 0.88346 0.99088 0.94962 0.92839 0.95478 0.89928 0.89308 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.19 37.16 0.34 -1.49 16 2 C 0.07 0.86 2.51 -27.88 -0.07 0.79 16 3 H 0.10 1.05 7.27 -51.93 -0.38 0.68 16 4 O -0.21 -2.82 11.19 -33.30 -0.37 -3.20 16 5 N -0.67 -6.02 10.76 60.35 0.65 -5.37 16 6 C 0.52 8.25 7.01 -10.99 -0.08 8.17 16 7 O -0.53 -10.35 16.03 -13.82 -0.22 -10.57 16 8 N -0.60 -9.10 3.00 -172.18 -0.52 -9.62 16 9 C 0.10 1.38 5.95 -3.37 -0.02 1.36 16 10 C 0.05 0.87 5.47 -3.46 -0.02 0.86 16 11 N -0.53 -10.81 4.62 -235.47 -1.09 -11.90 16 12 C 0.19 4.82 4.72 -4.98 -0.02 4.79 16 13 C -0.51 -13.63 8.41 -34.44 -0.29 -13.92 16 14 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 17 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 22 C 0.12 1.86 6.61 -3.60 -0.02 1.84 16 23 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 24 H 0.07 0.52 7.70 -51.93 -0.40 0.12 16 25 H 0.08 0.83 6.08 -51.93 -0.32 0.51 16 26 H 0.37 2.51 9.25 -39.29 -0.36 2.15 16 27 H 0.34 2.15 8.71 -39.29 -0.34 1.81 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 0.88 4.37 -51.93 -0.23 0.65 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 1.80 6.67 -51.93 -0.35 1.45 16 32 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 33 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 34 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 37 H 0.09 1.39 7.04 -51.93 -0.37 1.03 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -32.72 307.99 -7.10 -39.83 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.61 Total: 1.10 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -0.30 Total: 4.53 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.22 Total: -52.12 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.59 Total: -13.77 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.72 -7.10 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708775388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.456 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds