Wall clock time and date at job start Mon Mar 30 2020 04:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46622 * 2 1 4 4 O 1.42901 * 109.47252 * 239.99799 * 2 1 3 5 5 N 1.46300 * 113.99989 * 84.99509 * 4 2 1 6 6 C 1.50699 * 109.47065 * 119.99527 * 2 1 3 7 7 O 1.21287 * 119.99658 * 103.89283 * 6 2 1 8 8 N 1.34772 * 120.00001 * 283.89642 * 6 2 1 9 9 C 1.47074 * 120.88455 * 4.13992 * 8 6 2 10 10 C 1.53693 * 108.28016 * 128.75768 * 9 8 6 11 11 N 1.46899 * 109.25844 * 54.07930 * 10 9 8 12 12 C 1.46900 * 111.00158 * 172.60974 * 11 10 9 13 13 C 1.50701 * 109.46937 * 294.30641 * 12 11 10 14 14 H 1.08001 * 120.00004 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99830 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99798 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99789 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47074 * 90.00152 * 17 15 13 19 19 H 1.48509 * 109.47062 * 209.99792 * 17 15 13 20 20 H 1.48491 * 109.47417 * 329.99654 * 17 15 13 21 21 C 1.46899 * 111.27065 * 296.75942 * 11 10 9 22 22 C 1.47079 * 120.87783 * 184.41980 * 8 6 2 23 23 H 1.09010 * 109.46797 * 181.45996 * 1 2 3 24 24 H 1.08999 * 109.47103 * 61.46615 * 1 2 3 25 25 H 1.08997 * 109.47164 * 301.46247 * 1 2 3 26 26 H 1.00900 * 111.00185 * 180.02562 * 5 4 2 27 27 H 1.00899 * 111.00384 * 303.95869 * 5 4 2 28 28 H 1.09004 * 109.62494 * 248.52465 * 9 8 6 29 29 H 1.08997 * 109.62911 * 9.10255 * 9 8 6 30 30 H 1.09004 * 109.64401 * 294.07649 * 10 9 8 31 31 H 1.08998 * 109.42282 * 173.94873 * 10 9 8 32 32 H 1.09000 * 109.46790 * 54.30505 * 12 11 10 33 33 H 1.08995 * 109.47118 * 174.30445 * 12 11 10 34 34 H 0.97000 * 119.99676 * 179.97438 * 16 15 13 35 35 H 1.08995 * 109.49521 * 303.14614 * 21 11 10 36 36 H 1.08994 * 109.49335 * 183.05981 * 21 11 10 37 37 H 1.09002 * 109.63419 * 350.88933 * 22 8 6 38 38 H 1.09004 * 109.63342 * 111.47674 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 7 2.0949 0.1794 -2.3520 6 6 2.0324 -0.7103 1.2305 7 8 2.4723 -1.8372 1.1431 8 7 1.9927 -0.0934 2.4281 9 6 1.3812 1.2364 2.5724 10 6 0.3708 1.1794 3.7291 11 7 1.0410 0.6706 4.9333 12 6 0.1604 0.7642 6.1053 13 6 -0.1054 2.2140 6.4193 14 1 0.3361 2.9883 5.8095 15 6 -0.9113 2.5518 7.4858 16 7 -1.4485 1.6088 8.2287 17 14 -1.2401 4.3488 7.8755 18 1 -2.4477 4.8020 7.1394 19 1 -1.4623 4.5062 9.3354 20 1 -0.0721 5.1669 7.4617 21 6 1.5135 -0.7067 4.7385 22 6 2.5653 -0.7295 3.6242 23 1 -0.3633 -1.0274 0.0262 24 1 -0.3633 0.4909 -0.9028 25 1 -0.3633 0.5364 0.8766 26 1 2.4347 -0.3405 -3.1472 27 1 1.2051 0.6096 -2.5551 28 1 2.1540 1.9727 2.7932 29 1 0.8680 1.5056 1.6492 30 1 -0.4529 0.5166 3.4639 31 1 -0.0151 2.1802 3.9230 32 1 -0.7822 0.2598 5.8927 33 1 0.6418 0.2896 6.9603 34 1 -2.0151 1.8465 8.9792 35 1 0.6739 -1.3431 4.4592 36 1 1.9564 -1.0736 5.6643 37 1 2.8354 -1.7608 3.3968 38 1 3.4497 -0.1785 3.9442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708775388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:25 Heat of formation + Delta-G solvation = -44.347150 kcal Electronic energy + Delta-G solvation = -19903.240447 eV Core-core repulsion = 16781.988049 eV Total energy + Delta-G solvation = -3121.252398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.44512 -39.16313 -37.81112 -36.05774 -34.48181 -33.20402 -31.77345 -30.12842 -29.91432 -27.46830 -25.21956 -24.63450 -23.54569 -22.03425 -19.98535 -18.83963 -18.47935 -18.01403 -17.10098 -16.66705 -16.51020 -16.32833 -16.00999 -15.64903 -15.33884 -15.19650 -14.92230 -14.55802 -14.04688 -14.03587 -13.47199 -13.35653 -13.05207 -12.82387 -12.68653 -12.56528 -12.35549 -12.27900 -12.11155 -11.94699 -11.73530 -11.26993 -10.76573 -10.60306 -10.06517 -9.82698 -9.06218 -8.18532 -6.28954 1.27044 1.45143 1.45487 1.46973 1.58225 2.24347 2.43012 3.14070 3.22460 3.36166 3.81668 3.92661 3.98482 4.00521 4.14810 4.22121 4.23146 4.43548 4.47953 4.64448 4.69062 4.72904 4.83150 4.93961 4.98377 5.12886 5.20383 5.23602 5.39566 5.65648 5.81465 6.03377 6.12485 6.22265 6.35784 6.55772 6.87287 7.00019 7.41368 8.92901 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.034521 B = 0.004574 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.915667 B = 6119.714310 C = 6619.441807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 H 0.120 0.880 4 O -0.249 6.249 5 N -0.663 5.663 6 C 0.517 3.483 7 O -0.576 6.576 8 N -0.604 5.604 9 C 0.112 3.888 10 C 0.049 3.951 11 N -0.538 5.538 12 C 0.207 3.793 13 C -0.520 4.520 14 H 0.072 0.928 15 C 0.001 3.999 16 N -0.938 5.938 17 Si 0.971 3.029 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.261 1.261 21 C 0.044 3.956 22 C 0.126 3.874 23 H 0.051 0.949 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.379 0.621 27 H 0.356 0.644 28 H 0.092 0.908 29 H 0.120 0.880 30 H 0.018 0.982 31 H 0.091 0.909 32 H -0.040 1.040 33 H 0.004 0.996 34 H 0.263 0.737 35 H 0.014 0.986 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 1.573 -18.353 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 H 0.138 0.862 4 O -0.261 6.261 5 N -0.236 5.236 6 C 0.304 3.696 7 O -0.456 6.456 8 N -0.338 5.338 9 C -0.010 4.010 10 C -0.080 4.080 11 N -0.262 5.262 12 C 0.081 3.919 13 C -0.558 4.558 14 H 0.090 0.910 15 C -0.197 4.197 16 N -0.578 5.578 17 Si 0.795 3.205 18 H -0.197 1.197 19 H -0.214 1.214 20 H -0.185 1.185 21 C -0.085 4.085 22 C 0.004 3.996 23 H 0.071 0.929 24 H 0.118 0.882 25 H 0.105 0.895 26 H 0.194 0.806 27 H 0.168 0.832 28 H 0.110 0.890 29 H 0.137 0.863 30 H 0.036 0.964 31 H 0.110 0.890 32 H -0.023 1.023 33 H 0.022 0.978 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.030 1.448 -17.769 18.524 hybrid contribution -1.965 -0.681 0.277 2.098 sum 3.066 0.767 -17.492 17.776 Atomic orbital electron populations 1.22404 0.92157 1.03361 1.05354 1.21851 0.95651 0.97836 0.83176 0.86241 1.90809 1.88452 1.31135 1.15684 1.64392 1.32777 1.26113 1.00269 1.20827 0.77819 0.85926 0.85002 1.90664 1.48328 1.20315 1.86277 1.48199 1.58137 1.19982 1.07475 1.22330 0.96601 0.82913 0.99186 1.22477 0.94523 1.01356 0.89654 1.62009 1.40601 1.19324 1.04305 1.19386 0.88362 0.96594 0.87531 1.21465 1.28604 0.92518 1.13249 0.90973 1.25939 0.95560 1.02338 0.95895 1.70100 1.33786 1.34770 1.19164 0.85357 0.78915 0.79162 0.77034 1.19724 1.21389 1.18466 1.22422 0.97112 0.89978 0.98991 1.21656 0.95804 0.99289 0.82874 0.92941 0.88239 0.89528 0.80573 0.83228 0.88974 0.86267 0.96399 0.89042 1.02264 0.97807 0.92792 0.96747 0.89971 0.89499 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 9.19 71.98 0.66 -2.41 16 2 C 0.08 1.70 2.51 29.85 0.07 1.77 16 3 H 0.12 2.08 7.27 -2.39 -0.02 2.07 16 4 O -0.25 -6.20 11.19 -31.63 -0.35 -6.55 16 5 N -0.66 -9.89 10.76 37.02 0.40 -9.49 16 6 C 0.52 15.65 7.01 87.66 0.61 16.26 16 7 O -0.58 -22.35 16.03 15.47 0.25 -22.11 16 8 N -0.60 -17.31 3.00 -817.05 -2.45 -19.76 16 9 C 0.11 2.75 5.95 86.50 0.51 3.26 16 10 C 0.05 1.65 5.47 86.54 0.47 2.12 16 11 N -0.54 -21.84 4.62 -898.89 -4.15 -26.00 16 12 C 0.21 10.68 4.72 85.56 0.40 11.08 16 13 C -0.52 -27.88 8.41 25.60 0.22 -27.66 16 14 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 15 C 0.00 0.03 5.46 84.66 0.46 0.49 16 16 N -0.94 -55.34 13.29 21.45 0.28 -55.06 16 17 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 21 C 0.04 1.58 5.62 86.39 0.49 2.07 16 22 C 0.13 3.88 6.61 86.35 0.57 4.45 16 23 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 24 H 0.10 1.12 7.70 -2.39 -0.02 1.10 16 25 H 0.09 1.45 6.08 -2.39 -0.01 1.44 16 26 H 0.38 4.20 9.25 -89.69 -0.83 3.37 16 27 H 0.36 3.22 8.71 -89.69 -0.78 2.43 16 28 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.12 2.08 4.37 -2.39 -0.01 2.07 16 30 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.09 3.23 6.67 -2.39 -0.02 3.22 16 32 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 33 H 0.00 0.21 7.97 -2.39 -0.02 0.20 16 34 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 2.91 7.99 -2.39 -0.02 2.89 16 37 H 0.09 2.74 7.04 -2.39 -0.02 2.72 16 38 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -72.15 307.99 -0.06 -72.21 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -0.53 Total: 11.00 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 4.48 Total: 11.43 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -5.92 Total: -110.31 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.11 Total: -28.66 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -72.15 -0.06 -72.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708775388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.863 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds