Wall clock time and date at job start Mon Mar 30 2020 04:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34222 * 117.00292 * 2 1 4 4 O 1.20829 * 120.00176 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00468 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47251 * 174.69658 * 5 3 2 7 7 N 1.46902 * 115.55465 * 303.13646 * 6 5 3 8 8 C 1.46894 * 111.00243 * 185.40069 * 7 6 5 9 9 C 1.52995 * 109.46944 * 184.15650 * 8 7 6 10 10 O 1.42901 * 109.47435 * 65.00669 * 9 8 7 11 11 C 1.42896 * 114.00073 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46957 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99572 * 0.02562 * 12 11 10 14 14 C 1.37867 * 119.99977 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00014 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00339 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47037 * 89.99877 * 16 14 12 18 18 H 1.48492 * 109.47123 * 209.99856 * 16 14 12 19 19 H 1.48502 * 109.47016 * 330.00450 * 16 14 12 20 20 C 1.53002 * 117.49794 * 88.81095 * 6 5 3 21 21 C 1.53002 * 117.49647 * 157.46797 * 6 5 3 22 22 H 1.09002 * 109.47220 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47309 * 300.00519 * 1 2 3 24 24 H 1.09004 * 109.46753 * 60.00247 * 1 2 3 25 25 H 1.09009 * 109.46891 * 54.69867 * 5 3 2 26 26 H 1.08993 * 109.47122 * 294.69967 * 5 3 2 27 27 H 1.00900 * 110.99714 * 309.36426 * 7 6 5 28 28 H 1.09000 * 109.46636 * 64.15938 * 8 7 6 29 29 H 1.08992 * 109.47365 * 304.16202 * 8 7 6 30 30 H 1.09003 * 109.47610 * 304.99799 * 9 8 7 31 31 H 1.09008 * 109.46972 * 185.00623 * 9 8 7 32 32 H 1.08997 * 109.47114 * 299.99192 * 11 10 9 33 33 H 1.08994 * 109.47464 * 60.00080 * 11 10 9 34 34 H 0.97004 * 119.99951 * 180.02562 * 15 14 12 35 35 H 1.09002 * 117.49713 * 215.00024 * 20 6 5 36 36 H 1.08996 * 117.49861 * 0.02562 * 20 6 5 37 37 H 1.08998 * 117.49849 * 359.97438 * 21 6 5 38 38 H 1.08997 * 117.49912 * 144.97560 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0005 2.7358 -0.1329 7 7 3.4915 3.4427 -1.3158 8 6 4.0687 4.7899 -1.4129 9 6 3.4389 5.5306 -2.5943 10 8 2.0469 5.7331 -2.3423 11 6 1.3605 6.4208 -3.3900 12 6 -0.0920 6.5779 -3.0204 13 1 -0.4545 6.1916 -2.0793 14 6 -0.9578 7.2157 -3.8832 15 7 -2.2253 7.3533 -3.5605 16 14 -0.3303 7.8858 -5.5101 17 1 -0.4524 6.8393 -6.5567 18 1 -1.1341 9.0719 -5.9000 19 1 1.0947 8.2787 -5.3670 20 6 4.1668 3.5439 1.1557 21 6 5.4003 3.1049 0.3625 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9606 0.7006 -0.8379 26 1 3.9513 0.8652 0.9344 27 1 3.6661 2.9128 -2.1565 28 1 5.1454 4.7138 -1.5642 29 1 3.8690 5.3380 -0.4923 30 1 3.5616 4.9387 -3.5014 31 1 3.9293 6.4958 -2.7212 32 1 1.8078 7.4044 -3.5329 33 1 1.4400 5.8478 -4.3138 34 1 -2.8345 7.8017 -4.1677 35 1 3.8985 4.5999 1.1256 36 1 3.9674 3.0345 2.0984 37 1 6.0116 2.3069 0.7839 38 1 5.9435 3.8718 -0.1895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844387122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:50 Heat of formation + Delta-G solvation = -93.568516 kcal Electronic energy + Delta-G solvation = -19423.124123 eV Core-core repulsion = 16267.444575 eV Total energy + Delta-G solvation = -3155.679548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.35907 -38.82866 -36.75317 -36.05163 -33.17689 -32.30930 -30.47486 -28.63662 -27.37280 -26.67968 -22.59351 -22.22280 -21.70972 -21.04359 -19.34181 -17.40877 -16.95038 -16.65453 -16.38222 -15.78369 -15.65719 -15.18395 -14.51692 -14.23696 -13.99778 -13.57523 -13.31922 -13.00295 -12.63593 -12.44278 -12.30022 -12.10405 -11.86982 -11.53637 -11.25666 -11.00222 -10.75719 -10.66469 -10.58942 -10.43675 -10.25761 -10.11753 -9.78434 -9.06444 -8.73959 -8.35469 -7.96371 -6.02277 -4.00014 2.50553 2.75247 3.29558 3.35881 3.37837 3.77015 4.03452 4.42625 4.46712 4.60474 4.70352 4.79279 5.08717 5.21440 5.23782 5.28527 5.30344 5.36658 5.45482 5.52377 5.56244 5.61138 5.71251 5.82349 5.94198 5.99019 6.07517 6.27125 6.59072 6.68567 7.08743 7.14347 7.50699 7.69986 8.04924 8.16171 8.79356 9.13254 9.57622 11.11100 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.005173 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.986730 B = 5411.794278 C = 6488.696987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.374 6.374 3 C 0.444 3.556 4 O -0.451 6.451 5 C -0.066 4.066 6 C 0.067 3.933 7 N -0.623 5.623 8 C 0.061 3.939 9 C 0.062 3.938 10 O -0.360 6.360 11 C 0.167 3.833 12 C -0.512 4.512 13 H 0.083 0.917 14 C 0.070 3.930 15 N -0.898 5.898 16 Si 0.876 3.124 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.162 4.162 21 C -0.221 4.221 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.339 0.661 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.041 0.959 32 H -0.001 1.001 33 H -0.005 1.005 34 H 0.265 0.735 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.623 -14.200 6.800 22.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.292 6.292 3 C 0.283 3.717 4 O -0.333 6.333 5 C -0.104 4.104 6 C -0.026 4.026 7 N -0.252 5.252 8 C -0.068 4.068 9 C -0.016 4.016 10 O -0.279 6.279 11 C 0.092 3.908 12 C -0.550 4.550 13 H 0.101 0.899 14 C -0.131 4.131 15 N -0.537 5.537 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.199 4.199 21 C -0.261 4.261 22 H 0.114 0.886 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.158 0.842 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.017 0.983 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.493 -13.626 7.181 21.149 hybrid contribution 1.031 0.369 -1.479 1.840 sum 15.523 -13.257 5.701 21.195 Atomic orbital electron populations 1.23205 0.76379 1.03074 1.03004 1.86434 1.23422 1.34161 1.85193 1.23429 0.91749 0.81680 0.74844 1.90874 1.66159 1.35414 1.40838 1.20762 0.88956 0.95327 1.05362 1.21191 0.95329 0.92147 0.93906 1.59990 1.59660 1.02296 1.03207 1.22127 0.94602 0.89692 1.00365 1.22287 0.86197 0.97262 0.95877 1.88077 1.17381 1.78225 1.44206 1.20580 0.93572 0.90151 0.86505 1.20925 0.90194 1.36967 1.06907 0.89855 1.24770 0.94678 0.95659 0.97959 1.69891 1.03277 1.43442 1.37044 0.86857 0.79315 0.79081 0.84500 1.20042 1.20863 1.19215 1.23178 1.00203 1.01744 0.94788 1.23724 0.92113 1.04551 1.05729 0.88609 0.92051 0.91538 0.87775 0.87362 0.84153 0.94305 0.89754 0.94725 0.94060 0.98322 0.98699 0.92519 0.87851 0.88677 0.88755 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -4.77 10.56 -39.24 -0.41 -5.18 16 3 C 0.44 6.29 7.84 36.01 0.28 6.58 16 4 O -0.45 -8.64 15.18 -18.75 -0.28 -8.92 16 5 C -0.07 -0.67 5.87 -27.88 -0.16 -0.83 16 6 C 0.07 0.81 2.14 -131.60 -0.28 0.53 16 7 N -0.62 -9.45 5.73 -99.97 -0.57 -10.02 16 8 C 0.06 0.91 5.09 -3.83 -0.02 0.89 16 9 C 0.06 1.13 6.25 37.16 0.23 1.36 16 10 O -0.36 -9.00 10.27 -35.23 -0.36 -9.36 16 11 C 0.17 4.50 4.76 36.01 0.17 4.67 16 12 C -0.51 -16.07 9.99 -34.44 -0.34 -16.42 16 13 H 0.08 2.90 8.06 -52.49 -0.42 2.48 16 14 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 15 N -0.90 -28.73 13.96 55.43 0.77 -27.96 16 16 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 20 C -0.16 -1.91 9.59 -26.69 -0.26 -2.16 16 21 C -0.22 -2.09 9.52 -26.69 -0.25 -2.35 16 22 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 24 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 25 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 27 H 0.34 4.64 8.84 -39.29 -0.35 4.30 16 28 H 0.04 0.46 6.49 -51.93 -0.34 0.12 16 29 H 0.08 1.35 6.07 -51.93 -0.32 1.03 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.00 -0.02 7.20 -51.93 -0.37 -0.40 16 33 H 0.00 -0.12 7.57 -51.93 -0.39 -0.51 16 34 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 35 H 0.10 1.39 6.33 -51.93 -0.33 1.07 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.94 6.16 -51.93 -0.32 0.62 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -36.90 319.27 -6.19 -43.09 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.81 Total: 0.23 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 0.34 Total: -4.18 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.20 Total: -37.98 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -1.06 Total: -23.47 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -36.90 -6.19 -43.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844387122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.475 kcal (2) G-P(sol) polarization free energy of solvation -36.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds