Wall clock time and date at job start Mon Mar 30 2020 04:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34222 * 117.00292 * 2 1 4 4 O 1.20829 * 120.00176 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00468 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47251 * 174.69658 * 5 3 2 7 7 N 1.46902 * 115.55465 * 303.13646 * 6 5 3 8 8 C 1.46894 * 111.00243 * 185.40069 * 7 6 5 9 9 C 1.52995 * 109.46944 * 184.15650 * 8 7 6 10 10 O 1.42901 * 109.47435 * 65.00669 * 9 8 7 11 11 C 1.42896 * 114.00073 * 179.97438 * 10 9 8 12 12 C 1.50708 * 109.46957 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99572 * 0.02562 * 12 11 10 14 14 C 1.37867 * 119.99977 * 179.97438 * 12 11 10 15 15 N 1.31519 * 120.00014 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 120.00339 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47037 * 89.99877 * 16 14 12 18 18 H 1.48492 * 109.47123 * 209.99856 * 16 14 12 19 19 H 1.48502 * 109.47016 * 330.00450 * 16 14 12 20 20 C 1.53002 * 117.49794 * 88.81095 * 6 5 3 21 21 C 1.53002 * 117.49647 * 157.46797 * 6 5 3 22 22 H 1.09002 * 109.47220 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47309 * 300.00519 * 1 2 3 24 24 H 1.09004 * 109.46753 * 60.00247 * 1 2 3 25 25 H 1.09009 * 109.46891 * 54.69867 * 5 3 2 26 26 H 1.08993 * 109.47122 * 294.69967 * 5 3 2 27 27 H 1.00900 * 110.99714 * 309.36426 * 7 6 5 28 28 H 1.09000 * 109.46636 * 64.15938 * 8 7 6 29 29 H 1.08992 * 109.47365 * 304.16202 * 8 7 6 30 30 H 1.09003 * 109.47610 * 304.99799 * 9 8 7 31 31 H 1.09008 * 109.46972 * 185.00623 * 9 8 7 32 32 H 1.08997 * 109.47114 * 299.99192 * 11 10 9 33 33 H 1.08994 * 109.47464 * 60.00080 * 11 10 9 34 34 H 0.97004 * 119.99951 * 180.02562 * 15 14 12 35 35 H 1.09002 * 117.49713 * 215.00024 * 20 6 5 36 36 H 1.08996 * 117.49861 * 0.02562 * 20 6 5 37 37 H 1.08998 * 117.49849 * 359.97438 * 21 6 5 38 38 H 1.08997 * 117.49912 * 144.97560 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0005 2.7358 -0.1329 7 7 3.4915 3.4427 -1.3158 8 6 4.0687 4.7899 -1.4129 9 6 3.4389 5.5306 -2.5943 10 8 2.0469 5.7331 -2.3423 11 6 1.3605 6.4208 -3.3900 12 6 -0.0920 6.5779 -3.0204 13 1 -0.4545 6.1916 -2.0793 14 6 -0.9578 7.2157 -3.8832 15 7 -2.2253 7.3533 -3.5605 16 14 -0.3303 7.8858 -5.5101 17 1 -0.4524 6.8393 -6.5567 18 1 -1.1341 9.0719 -5.9000 19 1 1.0947 8.2787 -5.3670 20 6 4.1668 3.5439 1.1557 21 6 5.4003 3.1049 0.3625 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9606 0.7006 -0.8379 26 1 3.9513 0.8652 0.9344 27 1 3.6661 2.9128 -2.1565 28 1 5.1454 4.7138 -1.5642 29 1 3.8690 5.3380 -0.4923 30 1 3.5616 4.9387 -3.5014 31 1 3.9293 6.4958 -2.7212 32 1 1.8078 7.4044 -3.5329 33 1 1.4400 5.8478 -4.3138 34 1 -2.8345 7.8017 -4.1677 35 1 3.8985 4.5999 1.1256 36 1 3.9674 3.0345 2.0984 37 1 6.0116 2.3069 0.7839 38 1 5.9435 3.8718 -0.1895 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844387122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:50 Heat of formation + Delta-G solvation = -122.064454 kcal Electronic energy + Delta-G solvation = -19424.359799 eV Core-core repulsion = 16267.444575 eV Total energy + Delta-G solvation = -3156.915224 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.43424 -39.84810 -38.47021 -37.22806 -35.01519 -34.01034 -31.37432 -30.48607 -28.75178 -27.91977 -24.00109 -23.49960 -23.29578 -22.17219 -20.29490 -19.09598 -18.46223 -17.84450 -17.56280 -17.40734 -16.83752 -16.61321 -16.22361 -15.72245 -15.12881 -14.69985 -14.58117 -14.43012 -14.24260 -13.96902 -13.53908 -13.21449 -12.99192 -12.97172 -12.81442 -12.41756 -12.26703 -11.96853 -11.80983 -11.75583 -11.69178 -11.32931 -11.26749 -11.13039 -10.93499 -10.30812 -8.95151 -8.38281 -6.46506 1.30151 1.34971 1.42242 1.45986 1.82034 2.28302 2.90669 2.93561 3.07125 3.14395 3.62410 3.74816 3.95257 4.15009 4.22474 4.31792 4.33788 4.36438 4.47158 4.49786 4.54094 4.59252 4.66861 4.71860 4.79531 4.84123 4.94693 5.02114 5.11667 5.26219 5.43270 5.55647 5.93861 6.14243 6.51891 6.58147 6.82602 6.97509 7.18434 8.79786 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.005173 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.986730 B = 5411.794278 C = 6488.696987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.443 3.557 4 O -0.514 6.514 5 C -0.059 4.059 6 C 0.050 3.950 7 N -0.657 5.657 8 C 0.070 3.930 9 C 0.050 3.950 10 O -0.396 6.396 11 C 0.180 3.820 12 C -0.546 4.546 13 H 0.019 0.981 14 C 0.010 3.990 15 N -0.945 5.945 16 Si 0.963 3.037 17 H -0.259 1.259 18 H -0.270 1.270 19 H -0.245 1.245 20 C -0.186 4.186 21 C -0.181 4.181 22 H 0.135 0.865 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.134 0.866 26 H 0.144 0.856 27 H 0.345 0.655 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.012 0.988 33 H 0.008 0.992 34 H 0.273 0.727 35 H 0.075 0.925 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.848 -15.175 5.294 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.286 6.286 3 C 0.285 3.715 4 O -0.400 6.400 5 C -0.096 4.096 6 C -0.043 4.043 7 N -0.287 5.287 8 C -0.059 4.059 9 C -0.027 4.027 10 O -0.315 6.315 11 C 0.104 3.896 12 C -0.584 4.584 13 H 0.038 0.962 14 C -0.188 4.188 15 N -0.585 5.585 16 Si 0.783 3.217 17 H -0.183 1.183 18 H -0.195 1.195 19 H -0.168 1.168 20 C -0.224 4.224 21 C -0.221 4.221 22 H 0.153 0.847 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.152 0.848 26 H 0.161 0.839 27 H 0.164 0.836 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.123 0.877 37 H 0.145 0.855 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 17.750 -14.643 5.700 23.705 hybrid contribution -0.035 0.591 -0.876 1.058 sum 17.714 -14.051 4.823 23.119 Atomic orbital electron populations 1.23371 0.75937 1.05184 1.01601 1.86451 1.23967 1.33562 1.84629 1.24397 0.93444 0.80979 0.72646 1.90865 1.67788 1.37359 1.44022 1.20967 0.85594 0.94753 1.08332 1.21353 0.97633 0.92772 0.92520 1.59868 1.61475 1.02756 1.04630 1.22029 0.96411 0.89396 0.98040 1.22716 0.82777 0.98980 0.98190 1.88033 1.21232 1.78143 1.44124 1.20273 0.91007 0.91112 0.87192 1.21178 0.93610 1.38302 1.05262 0.96207 1.25933 0.94549 0.95230 1.03042 1.70061 1.05132 1.44014 1.39247 0.85512 0.79800 0.78756 0.77610 1.18306 1.19529 1.16792 1.23210 1.03026 1.00444 0.95675 1.23745 0.90670 1.04565 1.03116 0.84681 0.92773 0.93732 0.84834 0.83853 0.83554 0.90180 0.91658 0.93206 0.92366 0.97083 0.97464 0.91782 0.90663 0.87674 0.85526 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.56 113.37 1.20 1.95 16 2 O -0.37 -9.17 10.56 -51.34 -0.54 -9.72 16 3 C 0.44 12.52 7.84 71.24 0.56 13.08 16 4 O -0.51 -20.77 15.18 21.95 0.33 -20.44 16 5 C -0.06 -1.05 5.87 29.85 0.18 -0.87 16 6 C 0.05 1.11 2.14 3.53 0.01 1.12 16 7 N -0.66 -19.63 5.73 -470.20 -2.69 -22.32 16 8 C 0.07 2.02 5.09 86.30 0.44 2.45 16 9 C 0.05 1.79 6.25 71.98 0.45 2.24 16 10 O -0.40 -20.31 10.27 -148.98 -1.53 -21.84 16 11 C 0.18 9.74 4.76 71.24 0.34 10.08 16 12 C -0.55 -35.89 9.99 25.60 0.26 -35.63 16 13 H 0.02 1.49 8.06 -2.91 -0.02 1.46 16 14 C 0.01 0.61 5.47 84.65 0.46 1.08 16 15 N -0.95 -62.46 13.96 21.44 0.30 -62.16 16 16 Si 0.96 45.34 27.47 68.60 1.88 47.22 16 17 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.24 -10.57 6.54 99.48 0.65 -9.92 16 20 C -0.19 -4.25 9.59 30.62 0.29 -3.96 16 21 C -0.18 -2.81 9.52 30.62 0.29 -2.52 16 22 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 24 H 0.04 1.21 8.13 -2.39 -0.02 1.19 16 25 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.14 1.55 8.10 -2.39 -0.02 1.53 16 27 H 0.34 9.08 8.84 -89.69 -0.79 8.29 16 28 H 0.08 1.64 6.49 -2.39 -0.02 1.62 16 29 H 0.07 2.13 6.07 -2.39 -0.01 2.11 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.01 0.59 7.20 -2.39 -0.02 0.57 16 33 H 0.01 0.39 7.57 -2.39 -0.02 0.37 16 34 H 0.27 16.44 8.31 -92.70 -0.77 15.66 16 35 H 0.07 2.13 6.33 -2.39 -0.02 2.12 16 36 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.10 1.54 6.16 -2.39 -0.01 1.53 16 Total: -1.00 -86.79 319.27 2.43 -84.36 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.21 Total: 15.88 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 4.47 Total: -10.98 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -2.39 Total: -84.48 kcal Atomic # 8 Polarization: -50.26 SS G_CDS: -1.74 Total: -52.00 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Total: -86.79 2.43 -84.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844387122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.702 kcal (2) G-P(sol) polarization free energy of solvation -86.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds