Wall clock time and date at job start Mon Mar 30 2020 04:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99952 * 2 1 4 4 C 1.52996 * 112.90617 * 311.25344 * 3 2 1 5 5 C 1.53779 * 113.61016 * 82.49832 * 3 2 1 6 6 C 1.53784 * 87.07788 * 139.98459 * 5 3 2 7 7 H 1.09007 * 113.69130 * 220.00741 * 6 5 3 8 8 N 1.46903 * 113.61413 * 89.11426 * 6 5 3 9 9 C 1.46903 * 110.99901 * 101.17163 * 8 6 5 10 10 C 1.52996 * 109.47194 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.46985 * 59.99649 * 10 9 8 12 12 O 1.42894 * 109.47256 * 299.99833 * 10 9 8 13 13 C 1.50705 * 109.47242 * 179.97438 * 10 9 8 14 14 H 1.08000 * 119.99902 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99992 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00074 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 119.99851 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47443 * 89.99944 * 17 15 13 19 19 H 1.48504 * 109.47023 * 209.99585 * 17 15 13 20 20 H 1.48502 * 109.47186 * 329.99517 * 17 15 13 21 21 C 1.53771 * 113.61779 * 179.97438 * 3 2 1 22 22 C 1.52997 * 113.61859 * 105.46851 * 21 3 2 23 23 C 1.53011 * 113.61539 * 334.56875 * 21 3 2 24 24 H 1.08997 * 109.47213 * 299.99688 * 1 2 3 25 25 H 1.09005 * 109.47068 * 60.00427 * 1 2 3 26 26 H 1.09007 * 109.46507 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47195 * 288.74269 * 4 3 2 28 28 H 1.09001 * 109.47343 * 48.74541 * 4 3 2 29 29 H 1.08997 * 109.47447 * 168.74478 * 4 3 2 30 30 H 1.08992 * 113.61939 * 25.43719 * 5 3 2 31 31 H 1.09005 * 113.61967 * 254.52711 * 5 3 2 32 32 H 1.00899 * 111.00346 * 225.12226 * 8 6 5 33 33 H 1.08994 * 109.47317 * 59.99829 * 9 8 6 34 34 H 1.08998 * 109.46894 * 300.00180 * 9 8 6 35 35 H 0.96704 * 113.99898 * 299.99938 * 12 10 9 36 36 H 0.96997 * 120.00279 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.47553 * 162.98437 * 22 21 3 38 38 H 1.09000 * 109.47572 * 282.99084 * 22 21 3 39 39 H 1.09004 * 109.46864 * 42.98473 * 22 21 3 40 40 H 1.09006 * 109.46884 * 302.99840 * 23 21 3 41 41 H 1.08995 * 109.47116 * 62.99371 * 23 21 3 42 42 H 1.08997 * 109.47295 * 182.99968 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4035 2.2275 -1.0595 5 6 2.0927 1.9430 1.3970 6 6 3.4775 2.4719 0.9876 7 1 4.2197 2.4185 1.7842 8 7 3.4356 3.7869 0.3342 9 6 3.8103 4.8532 1.2725 10 6 3.7544 6.2047 0.5575 11 1 2.7426 6.3810 0.1923 12 8 4.6642 6.1986 -0.5444 13 6 4.1382 7.2987 1.5203 14 1 4.3965 7.0544 2.5401 15 6 4.1595 8.6114 1.0993 16 7 3.8454 8.9088 -0.1427 17 14 4.6359 9.9673 2.2925 18 1 6.1037 10.1848 2.2344 19 1 3.9345 11.2225 1.9211 20 1 4.2481 9.5728 3.6706 21 6 3.5479 1.2953 0.0006 22 6 4.1639 1.6648 -1.3502 23 6 4.1522 0.0252 0.6032 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 1.7266 1.9055 -2.0495 28 1 0.3160 2.1832 -1.0000 29 1 1.7355 3.2507 -0.8840 30 1 2.1254 1.2154 2.2078 31 1 1.3563 2.7296 1.5623 32 1 4.0246 3.8026 -0.4849 33 1 4.8218 4.6767 1.6381 34 1 3.1160 4.8582 2.1128 35 1 5.5855 6.0467 -0.2929 36 1 3.8607 9.8323 -0.4390 37 1 5.2116 1.9315 -1.2111 38 1 4.0925 0.8136 -2.0273 39 1 3.6264 2.5128 -1.7748 40 1 3.7836 -0.1051 1.6207 41 1 3.8647 -0.8356 -0.0004 42 1 5.2386 0.1117 0.6186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930627844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:46 Heat of formation + Delta-G solvation = -75.411586 kcal Electronic energy + Delta-G solvation = -20621.159124 eV Core-core repulsion = 17602.100014 eV Total energy + Delta-G solvation = -3019.059109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.68604 -36.86410 -35.86328 -32.88019 -32.09935 -30.56948 -29.29528 -28.11577 -26.77563 -26.28044 -24.19927 -22.05607 -21.48595 -20.47983 -17.87471 -16.97363 -16.25450 -15.77565 -15.52215 -14.87291 -14.57900 -14.38457 -14.22793 -13.72364 -13.49886 -13.27441 -12.84541 -12.55852 -12.16955 -12.08110 -12.03623 -11.86128 -11.66659 -11.46526 -11.23891 -11.05495 -10.92888 -10.81790 -10.63712 -10.57385 -10.17691 -10.04046 -9.86062 -9.22218 -9.00239 -8.58470 -8.17571 -7.78072 -6.01142 -4.19388 3.26992 3.34279 3.36939 3.86352 4.33222 4.47281 4.60171 4.69088 4.94223 5.18753 5.26303 5.28468 5.38246 5.44908 5.51656 5.64252 5.71576 5.76531 5.79472 5.86160 5.93990 5.97310 6.06709 6.12752 6.16933 6.20393 6.24169 6.29746 6.44503 6.49954 6.61761 6.66280 6.89483 7.40435 7.56785 7.75897 7.85368 7.99039 8.22503 8.84121 9.36714 9.57627 11.03116 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.035613 B = 0.004595 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.035365 B = 6091.642866 C = 6185.473740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.106 3.894 4 C -0.171 4.171 5 C -0.152 4.152 6 C 0.071 3.929 7 H 0.055 0.945 8 N -0.668 5.668 9 C 0.036 3.964 10 C 0.232 3.768 11 H 0.063 0.937 12 O -0.565 6.565 13 C -0.573 4.573 14 H 0.054 0.946 15 C 0.080 3.920 16 N -0.858 5.858 17 Si 0.889 3.111 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.070 4.070 22 C -0.146 4.146 23 C -0.118 4.118 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.348 0.652 33 H 0.018 0.982 34 H 0.064 0.936 35 H 0.341 0.659 36 H 0.260 0.740 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -16.256 -0.036 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C 0.067 3.933 4 C -0.228 4.228 5 C -0.190 4.190 6 C -0.040 4.040 7 H 0.073 0.927 8 N -0.302 5.302 9 C -0.093 4.093 10 C 0.175 3.825 11 H 0.081 0.919 12 O -0.367 6.367 13 C -0.612 4.612 14 H 0.073 0.927 15 C -0.126 4.126 16 N -0.494 5.494 17 Si 0.716 3.284 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.071 4.071 22 C -0.204 4.204 23 C -0.175 4.175 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.184 0.816 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.735 -16.065 -0.426 16.499 hybrid contribution 1.397 0.778 1.236 2.021 sum -2.338 -15.288 0.810 15.487 Atomic orbital electron populations 1.22661 0.82156 1.01754 1.00127 1.87894 1.18919 1.27988 1.94846 1.22913 0.92777 0.82530 0.95089 1.22309 1.00074 1.02862 0.97589 1.23609 0.98530 0.99908 0.96999 1.22465 0.96438 0.89211 0.95886 0.92679 1.60476 1.59320 1.00831 1.09554 1.22894 0.97277 0.93563 0.95557 1.19415 0.91140 0.87341 0.84645 0.91908 1.86584 1.18354 1.95284 1.36515 1.21631 1.49847 0.92192 0.97495 0.92739 1.25022 0.94090 0.98652 0.94844 1.70077 1.45413 1.18540 1.15351 0.86678 0.78631 0.81582 0.81501 1.20581 1.21097 1.19859 1.22183 0.93167 0.95638 0.96067 1.21807 1.00594 1.02083 0.95881 1.21406 0.99425 0.96012 1.00699 0.94319 0.93832 0.90444 0.92353 0.92836 0.87181 0.90135 0.90614 0.82936 0.96403 0.91752 0.81597 0.93001 0.92519 0.92526 0.90606 0.92534 0.91858 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.35 101.05 1.05 1.36 16 2 O -0.38 -5.06 9.73 -35.23 -0.34 -5.40 16 3 C 0.11 1.44 1.21 -89.82 -0.11 1.33 16 4 C -0.17 -2.36 7.39 37.16 0.27 -2.08 16 5 C -0.15 -2.15 6.86 -25.92 -0.18 -2.33 16 6 C 0.07 1.05 3.64 -66.92 -0.24 0.81 16 7 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 8 N -0.67 -11.44 4.06 -105.89 -0.43 -11.87 16 9 C 0.04 0.72 5.22 -3.82 -0.02 0.70 16 10 C 0.23 5.76 3.10 -27.88 -0.09 5.67 16 11 H 0.06 1.75 8.14 -51.93 -0.42 1.33 16 12 O -0.57 -14.01 12.07 -35.23 -0.43 -14.43 16 13 C -0.57 -15.60 8.76 -34.44 -0.30 -15.90 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 16 N -0.86 -25.24 12.84 55.43 0.71 -24.53 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 C -0.07 -0.92 1.31 -153.72 -0.20 -1.12 16 22 C -0.15 -1.85 7.40 37.16 0.27 -1.58 16 23 C -0.12 -1.40 8.47 37.16 0.31 -1.08 16 24 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 25 H 0.04 0.45 6.36 -51.93 -0.33 0.12 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.76 7.14 -51.93 -0.37 0.39 16 28 H 0.05 0.68 6.18 -51.93 -0.32 0.36 16 29 H 0.11 1.74 5.76 -51.93 -0.30 1.44 16 30 H 0.08 1.07 7.62 -51.93 -0.40 0.67 16 31 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.35 6.00 5.74 -39.29 -0.23 5.78 16 33 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.34 7.52 9.04 45.56 0.41 7.94 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 1.03 5.06 -51.93 -0.26 0.77 16 40 H 0.06 0.66 7.32 -51.93 -0.38 0.28 16 41 H 0.06 0.75 7.95 -51.93 -0.41 0.33 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -29.30 323.95 -6.29 -35.59 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -6.34 Total: 11.79 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 0.68 Total: -12.08 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.28 Total: -36.40 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.77 Total: -19.84 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.30 -6.29 -35.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930627844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.822 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds