Wall clock time and date at job start Mon Mar 30 2020 04:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99952 * 2 1 4 4 C 1.52996 * 112.90617 * 311.25344 * 3 2 1 5 5 C 1.53779 * 113.61016 * 82.49832 * 3 2 1 6 6 C 1.53784 * 87.07788 * 139.98459 * 5 3 2 7 7 H 1.09007 * 113.69130 * 220.00741 * 6 5 3 8 8 N 1.46903 * 113.61413 * 89.11426 * 6 5 3 9 9 C 1.46903 * 110.99901 * 101.17163 * 8 6 5 10 10 C 1.52996 * 109.47194 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.46985 * 59.99649 * 10 9 8 12 12 O 1.42894 * 109.47256 * 299.99833 * 10 9 8 13 13 C 1.50705 * 109.47242 * 179.97438 * 10 9 8 14 14 H 1.08000 * 119.99902 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99992 * 180.02562 * 13 10 9 16 16 N 1.31512 * 120.00074 * 359.97438 * 15 13 10 17 17 Si 1.86794 * 119.99851 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47443 * 89.99944 * 17 15 13 19 19 H 1.48504 * 109.47023 * 209.99585 * 17 15 13 20 20 H 1.48502 * 109.47186 * 329.99517 * 17 15 13 21 21 C 1.53771 * 113.61779 * 179.97438 * 3 2 1 22 22 C 1.52997 * 113.61859 * 105.46851 * 21 3 2 23 23 C 1.53011 * 113.61539 * 334.56875 * 21 3 2 24 24 H 1.08997 * 109.47213 * 299.99688 * 1 2 3 25 25 H 1.09005 * 109.47068 * 60.00427 * 1 2 3 26 26 H 1.09007 * 109.46507 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47195 * 288.74269 * 4 3 2 28 28 H 1.09001 * 109.47343 * 48.74541 * 4 3 2 29 29 H 1.08997 * 109.47447 * 168.74478 * 4 3 2 30 30 H 1.08992 * 113.61939 * 25.43719 * 5 3 2 31 31 H 1.09005 * 113.61967 * 254.52711 * 5 3 2 32 32 H 1.00899 * 111.00346 * 225.12226 * 8 6 5 33 33 H 1.08994 * 109.47317 * 59.99829 * 9 8 6 34 34 H 1.08998 * 109.46894 * 300.00180 * 9 8 6 35 35 H 0.96704 * 113.99898 * 299.99938 * 12 10 9 36 36 H 0.96997 * 120.00279 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.47553 * 162.98437 * 22 21 3 38 38 H 1.09000 * 109.47572 * 282.99084 * 22 21 3 39 39 H 1.09004 * 109.46864 * 42.98473 * 22 21 3 40 40 H 1.09006 * 109.46884 * 302.99840 * 23 21 3 41 41 H 1.08995 * 109.47116 * 62.99371 * 23 21 3 42 42 H 1.08997 * 109.47295 * 182.99968 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.4035 2.2275 -1.0595 5 6 2.0927 1.9430 1.3970 6 6 3.4775 2.4719 0.9876 7 1 4.2197 2.4185 1.7842 8 7 3.4356 3.7869 0.3342 9 6 3.8103 4.8532 1.2725 10 6 3.7544 6.2047 0.5575 11 1 2.7426 6.3810 0.1923 12 8 4.6642 6.1986 -0.5444 13 6 4.1382 7.2987 1.5203 14 1 4.3965 7.0544 2.5401 15 6 4.1595 8.6114 1.0993 16 7 3.8454 8.9088 -0.1427 17 14 4.6359 9.9673 2.2925 18 1 6.1037 10.1848 2.2344 19 1 3.9345 11.2225 1.9211 20 1 4.2481 9.5728 3.6706 21 6 3.5479 1.2953 0.0006 22 6 4.1639 1.6648 -1.3502 23 6 4.1522 0.0252 0.6032 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3632 -1.0278 -0.0005 27 1 1.7266 1.9055 -2.0495 28 1 0.3160 2.1832 -1.0000 29 1 1.7355 3.2507 -0.8840 30 1 2.1254 1.2154 2.2078 31 1 1.3563 2.7296 1.5623 32 1 4.0246 3.8026 -0.4849 33 1 4.8218 4.6767 1.6381 34 1 3.1160 4.8582 2.1128 35 1 5.5855 6.0467 -0.2929 36 1 3.8607 9.8323 -0.4390 37 1 5.2116 1.9315 -1.2111 38 1 4.0925 0.8136 -2.0273 39 1 3.6264 2.5128 -1.7748 40 1 3.7836 -0.1051 1.6207 41 1 3.8647 -0.8356 -0.0004 42 1 5.2386 0.1117 0.6186 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930627844.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:46 Heat of formation + Delta-G solvation = -95.995436 kcal Electronic energy + Delta-G solvation = -20622.051706 eV Core-core repulsion = 17602.100014 eV Total energy + Delta-G solvation = -3019.951692 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.79883 -38.32313 -37.34587 -34.46815 -34.13689 -31.64410 -30.40385 -29.87436 -27.74775 -27.45062 -25.95616 -23.27926 -22.63662 -22.27238 -19.07881 -18.92540 -17.46997 -16.98659 -16.64857 -16.56910 -16.18686 -15.94772 -15.68470 -15.09153 -14.72486 -14.54028 -14.31950 -13.86195 -13.43505 -13.27705 -13.14430 -13.00666 -12.95833 -12.83926 -12.79516 -12.69608 -12.53540 -12.44153 -12.05899 -11.85157 -11.64541 -11.22096 -11.03150 -10.89573 -10.70697 -10.27887 -10.10565 -9.18736 -8.12978 -6.38675 1.40749 1.41624 1.52255 2.38997 2.88311 3.12718 3.19586 3.48961 3.56048 3.81672 4.04912 4.27860 4.30382 4.41323 4.49645 4.54443 4.58440 4.60470 4.63642 4.69523 4.81370 4.82320 4.87394 4.90205 4.99232 5.01527 5.07116 5.12672 5.19089 5.22510 5.46318 5.49593 5.57287 5.64085 5.76006 6.04278 6.25060 6.43188 6.57382 6.75530 7.34294 7.55860 8.91489 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.035613 B = 0.004595 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.035365 B = 6091.642866 C = 6185.473740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.386 6.386 3 C 0.108 3.892 4 C -0.168 4.168 5 C -0.150 4.150 6 C 0.065 3.935 7 H 0.057 0.943 8 N -0.666 5.666 9 C 0.056 3.944 10 C 0.236 3.764 11 H 0.023 0.977 12 O -0.576 6.576 13 C -0.588 4.588 14 H 0.058 0.942 15 C 0.028 3.972 16 N -0.898 5.898 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.266 1.266 21 C -0.064 4.064 22 C -0.145 4.145 23 C -0.114 4.114 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.348 0.652 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.353 0.647 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 -17.420 0.744 17.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.305 6.305 3 C 0.069 3.931 4 C -0.225 4.225 5 C -0.188 4.188 6 C -0.045 4.045 7 H 0.074 0.926 8 N -0.301 5.301 9 C -0.073 4.073 10 C 0.178 3.822 11 H 0.041 0.959 12 O -0.380 6.380 13 C -0.626 4.626 14 H 0.076 0.924 15 C -0.175 4.175 16 N -0.535 5.535 17 Si 0.783 3.217 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.065 4.065 22 C -0.202 4.202 23 C -0.171 4.171 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.171 0.829 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.198 0.802 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.233 -17.251 0.365 17.555 hybrid contribution 1.193 1.082 0.962 1.876 sum -2.040 -16.169 1.327 16.351 Atomic orbital electron populations 1.22847 0.80849 1.03278 1.00314 1.87876 1.20363 1.27435 1.94851 1.22814 0.93181 0.82713 0.94377 1.22231 1.00600 1.01592 0.98088 1.23611 0.97560 0.99727 0.97927 1.22505 0.97026 0.88491 0.96502 0.92559 1.60396 1.59213 1.01435 1.09023 1.22462 0.97475 0.92209 0.95156 1.19186 0.89177 0.89576 0.84280 0.95914 1.86519 1.19257 1.95510 1.36694 1.22035 1.49390 0.93209 0.98008 0.92409 1.25868 0.93977 1.01205 0.96449 1.70213 1.46854 1.19069 1.17383 0.85577 0.78473 0.78290 0.79327 1.19769 1.20936 1.19052 1.22182 0.93113 0.95344 0.95838 1.21781 1.00599 1.02037 0.95765 1.21386 1.00019 0.95098 1.00610 0.94252 0.93534 0.88321 0.91809 0.92117 0.89455 0.88988 0.92117 0.82941 0.95815 0.92252 0.80213 0.93005 0.92058 0.91367 0.91885 0.92451 0.91533 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.35 113.37 1.17 1.63 16 2 O -0.39 -9.58 9.73 -148.98 -1.45 -11.03 16 3 C 0.11 2.80 1.21 -10.27 -0.01 2.79 16 4 C -0.17 -4.53 7.39 71.98 0.53 -4.00 16 5 C -0.15 -4.09 6.86 31.12 0.21 -3.88 16 6 C 0.07 1.87 3.64 45.43 0.17 2.03 16 7 H 0.06 1.62 7.89 -2.38 -0.02 1.61 16 8 N -0.67 -22.82 4.06 -488.91 -1.98 -24.80 16 9 C 0.06 2.27 5.22 86.30 0.45 2.72 16 10 C 0.24 11.91 3.10 29.85 0.09 12.01 16 11 H 0.02 1.33 8.14 -2.39 -0.02 1.31 16 12 O -0.58 -28.94 12.07 -148.98 -1.80 -30.73 16 13 C -0.59 -32.15 8.76 25.60 0.22 -31.92 16 14 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 15 C 0.03 1.54 5.40 84.66 0.46 2.00 16 16 N -0.90 -53.59 12.84 21.45 0.28 -53.31 16 17 Si 0.96 43.17 29.54 68.60 2.03 45.19 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 C -0.06 -1.59 1.31 -51.67 -0.07 -1.65 16 22 C -0.14 -3.45 7.40 71.98 0.53 -2.92 16 23 C -0.11 -2.42 8.47 71.99 0.61 -1.81 16 24 H 0.04 0.76 8.11 -2.39 -0.02 0.74 16 25 H 0.05 0.88 6.36 -2.38 -0.02 0.86 16 26 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.06 1.62 7.14 -2.39 -0.02 1.60 16 28 H 0.06 1.51 6.18 -2.39 -0.01 1.49 16 29 H 0.09 2.80 5.76 -2.39 -0.01 2.78 16 30 H 0.09 2.29 7.62 -2.39 -0.02 2.27 16 31 H 0.06 1.83 8.10 -2.38 -0.02 1.81 16 32 H 0.35 11.98 5.74 -89.69 -0.52 11.47 16 33 H 0.02 0.93 8.12 -2.39 -0.02 0.91 16 34 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.35 15.60 9.04 -74.05 -0.67 14.93 16 36 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.67 5.06 -2.39 -0.01 1.66 16 40 H 0.06 1.21 7.32 -2.38 -0.02 1.19 16 41 H 0.07 1.39 7.95 -2.39 -0.02 1.37 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -61.93 323.95 1.26 -60.67 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.18 Total: 37.02 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 4.37 Total: -23.00 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.71 Total: -78.11 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -3.25 Total: -41.76 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -61.93 1.26 -60.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930627844.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.329 kcal (2) G-P(sol) polarization free energy of solvation -61.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds