Wall clock time and date at job start Mon Mar 30 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 H 1.09005 * 109.50789 * 54.91234 * 3 2 1 5 5 C 1.53093 * 109.50409 * 174.99434 * 3 2 1 6 6 N 1.47013 * 109.25828 * 63.09206 * 5 3 2 7 7 C 1.46896 * 111.00189 * 182.39099 * 6 5 3 8 8 C 1.53002 * 109.47246 * 169.99411 * 7 6 5 9 9 H 1.09000 * 109.46986 * 60.00111 * 8 7 6 10 10 O 1.42898 * 109.47113 * 300.00070 * 8 7 6 11 11 C 1.50706 * 109.46931 * 179.97438 * 8 7 6 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 18 18 H 1.48498 * 109.47295 * 60.00420 * 15 13 11 19 19 C 1.47015 * 110.75344 * 58.60991 * 6 5 3 20 20 C 1.53089 * 109.25853 * 301.38484 * 19 6 5 21 21 H 1.08996 * 109.51215 * 296.91410 * 20 19 6 22 22 C 1.53002 * 109.50545 * 176.78144 * 20 19 6 23 23 C 1.53001 * 109.46939 * 175.21663 * 22 20 19 24 24 O 1.43011 * 109.50854 * 294.78383 * 3 2 1 25 25 H 1.08995 * 109.47418 * 300.00529 * 1 2 3 26 26 H 1.09009 * 109.46728 * 60.00008 * 1 2 3 27 27 H 1.08998 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47431 * 240.00021 * 2 1 3 29 29 H 1.08996 * 109.46448 * 119.99776 * 2 1 3 30 30 H 1.08999 * 109.50860 * 303.15045 * 5 3 2 31 31 H 1.09007 * 109.54189 * 183.04368 * 5 3 2 32 32 H 1.09004 * 109.47535 * 49.99559 * 7 6 5 33 33 H 1.09004 * 109.47041 * 289.99598 * 7 6 5 34 34 H 0.96701 * 113.99881 * 299.99463 * 10 8 7 35 35 H 0.97000 * 119.99706 * 359.97438 * 14 13 11 36 36 H 1.08997 * 109.50347 * 61.32444 * 19 6 5 37 37 H 1.08997 * 109.50183 * 181.45257 * 19 6 5 38 38 H 1.08994 * 109.47311 * 295.22016 * 22 20 19 39 39 H 1.09001 * 109.47164 * 55.22470 * 22 20 19 40 40 H 1.09003 * 109.47016 * 60.01012 * 23 22 20 41 41 H 1.09000 * 109.47121 * 179.97438 * 23 22 20 42 42 H 1.08994 * 109.47408 * 300.00294 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9826 0.8408 5 6 3.5658 1.4452 0.1259 6 7 4.1504 0.7823 -1.0488 7 6 5.6137 0.7131 -0.9403 8 6 6.1647 -0.1930 -2.0432 9 1 5.8914 0.2129 -3.0172 10 8 5.6140 -1.5041 -1.9020 11 6 7.6660 -0.2635 -1.9322 12 1 8.1761 0.2830 -1.1528 13 6 8.3882 -1.0256 -2.8259 14 7 7.7671 -1.6906 -3.7754 15 14 10.2490 -1.1135 -2.6879 16 1 10.7838 -1.9919 -3.7592 17 1 10.8212 0.2491 -2.8340 18 1 10.6215 -1.6671 -1.3613 19 6 3.7455 1.4638 -2.2869 20 6 2.2180 1.4608 -2.3886 21 1 1.8598 0.4337 -2.4581 22 6 1.7873 2.2383 -3.6339 23 6 0.2700 2.1344 -3.8006 24 8 1.6665 2.0811 -1.2239 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8574 0.9093 1.0291 31 1 3.9253 2.4729 0.1804 32 1 5.8872 0.3072 0.0337 33 1 6.0338 1.7132 -1.0480 34 1 5.8179 -1.9273 -1.0567 35 1 6.8008 -1.6452 -3.8467 36 1 4.1073 2.4919 -2.2714 37 1 4.1684 0.9413 -3.1449 38 1 2.0700 3.2853 -3.5244 39 1 2.2787 1.8192 -4.5120 40 1 -0.2215 2.5537 -2.9226 41 1 -0.0369 2.6888 -4.6875 42 1 -0.0127 1.0875 -3.9101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930746849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:42 Heat of formation + Delta-G solvation = -114.617514 kcal Electronic energy + Delta-G solvation = -20800.925829 eV Core-core repulsion = 17780.166623 eV Total energy + Delta-G solvation = -3020.759206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92077 -36.69471 -34.68595 -34.45218 -32.36492 -32.06528 -29.35181 -28.95303 -26.27797 -24.03268 -23.85818 -22.39179 -21.53031 -20.39101 -19.14629 -17.35716 -16.50368 -16.08982 -15.18310 -15.04846 -14.63532 -14.30901 -13.94438 -13.76395 -13.58396 -13.48829 -13.26904 -12.92945 -12.61097 -12.17417 -11.95165 -11.76943 -11.64008 -11.47876 -11.17823 -10.98786 -10.89686 -10.81622 -10.69748 -10.59512 -10.12384 -10.08417 -9.92331 -9.42069 -9.07836 -8.47244 -8.03197 -7.78246 -6.35862 -4.19411 3.41167 3.42271 3.61669 3.86872 4.20964 4.52584 4.87656 4.93489 5.08373 5.13950 5.25329 5.25752 5.35250 5.44678 5.47097 5.53092 5.65943 5.71689 5.75264 5.84890 5.92481 5.96781 5.98458 6.04932 6.05082 6.07735 6.16940 6.24548 6.32675 6.34606 6.38620 6.54694 6.64177 7.31252 7.40321 7.44454 7.59865 8.01864 8.34567 8.85403 9.21511 9.66955 11.04237 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.028716 B = 0.005273 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.842509 B = 5309.236803 C = 5684.179531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.097 3.903 4 H 0.097 0.903 5 C 0.021 3.979 6 N -0.522 5.522 7 C 0.038 3.962 8 C 0.222 3.778 9 H 0.047 0.953 10 O -0.571 6.571 11 C -0.653 4.653 12 H 0.047 0.953 13 C 0.036 3.964 14 N -0.892 5.892 15 Si 1.066 2.934 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.288 1.288 19 C 0.026 3.974 20 C 0.092 3.908 21 H 0.070 0.930 22 C -0.116 4.116 23 C -0.146 4.146 24 O -0.377 6.377 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.351 0.649 35 H 0.284 0.716 36 H 0.032 0.968 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.983 6.370 5.448 15.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.039 3.961 4 H 0.115 0.885 5 C -0.107 4.107 6 N -0.246 5.246 7 C -0.089 4.089 8 C 0.164 3.836 9 H 0.064 0.936 10 O -0.374 6.374 11 C -0.691 4.691 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.526 5.526 15 Si 0.894 3.106 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.214 1.214 19 C -0.102 4.102 20 C 0.035 3.965 21 H 0.088 0.912 22 C -0.154 4.154 23 C -0.203 4.203 24 O -0.296 6.296 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.196 0.804 35 H 0.096 0.904 36 H 0.051 0.949 37 H 0.107 0.893 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.177 5.520 4.121 13.991 hybrid contribution -0.423 1.344 1.491 2.052 sum -12.601 6.864 5.613 15.408 Atomic orbital electron populations 1.21722 0.95993 1.01058 1.01675 1.22000 0.95569 0.96960 1.03887 1.22237 0.93037 0.93702 0.87129 0.88525 1.22782 0.95315 0.97357 0.95290 1.62247 1.11121 1.50659 1.00603 1.22946 0.84370 0.99592 1.02014 1.19461 0.91674 0.80023 0.92418 0.93587 1.86459 1.78417 1.32159 1.40380 1.22439 0.92175 1.35446 1.19033 0.93452 1.25760 1.06568 0.92563 0.92436 1.70635 1.13160 1.37809 1.31003 0.83612 0.74547 0.76294 0.76122 1.20703 1.21529 1.21423 1.22777 0.95616 0.97042 0.94809 1.22201 0.91865 0.96979 0.85486 0.91243 1.21522 0.96938 1.00877 0.96065 1.21684 0.95586 1.01559 1.01479 1.87955 1.72604 1.55209 1.13816 0.93320 0.92456 0.93123 0.89927 0.91452 0.90276 0.94911 0.91654 0.95459 0.80448 0.90382 0.94930 0.89260 0.91469 0.90479 0.92144 0.93022 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.81 37.16 0.36 -1.28 16 2 C -0.15 -1.90 5.04 -26.73 -0.13 -2.04 16 3 C 0.10 1.31 3.30 -26.68 -0.09 1.22 16 4 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 5 C 0.02 0.32 5.06 -3.71 -0.02 0.30 16 6 N -0.52 -9.42 4.05 -234.31 -0.95 -10.37 16 7 C 0.04 0.79 4.56 -3.83 -0.02 0.78 16 8 C 0.22 5.55 2.31 -27.88 -0.06 5.48 16 9 H 0.05 1.25 6.38 -51.93 -0.33 0.92 16 10 O -0.57 -14.39 11.88 -35.23 -0.42 -14.81 16 11 C -0.65 -18.11 8.76 -34.44 -0.30 -18.41 16 12 H 0.05 1.30 7.74 -52.49 -0.41 0.89 16 13 C 0.04 1.02 5.40 -17.82 -0.10 0.92 16 14 N -0.89 -27.15 13.53 55.43 0.75 -26.40 16 15 Si 1.07 24.92 29.90 -169.99 -5.08 19.84 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.03 0.45 4.72 -3.71 -0.02 0.43 16 20 C 0.09 1.37 2.41 -26.68 -0.06 1.31 16 21 H 0.07 1.09 6.38 -51.93 -0.33 0.76 16 22 C -0.12 -1.47 5.65 -26.73 -0.15 -1.62 16 23 C -0.15 -1.61 9.81 37.16 0.36 -1.25 16 24 O -0.38 -5.54 9.37 -35.23 -0.33 -5.87 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.67 7.83 -51.92 -0.41 0.26 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.27 6.01 -51.93 -0.31 0.96 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.33 8.04 -51.93 -0.42 0.92 16 33 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 34 H 0.35 8.09 9.04 45.56 0.41 8.50 16 35 H 0.28 8.81 6.47 -40.82 -0.26 8.55 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.72 6.38 -51.93 -0.33 1.39 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -30.15 326.60 -7.99 -38.15 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.66 Total: 8.70 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.22 Total: -14.15 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.20 Total: -36.78 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.75 Total: -20.68 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.15 -7.99 -38.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930746849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.472 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds