Wall clock time and date at job start Mon Mar 30 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47053 * 2 1 4 4 H 1.09005 * 109.50789 * 54.91234 * 3 2 1 5 5 C 1.53093 * 109.50409 * 174.99434 * 3 2 1 6 6 N 1.47013 * 109.25828 * 63.09206 * 5 3 2 7 7 C 1.46896 * 111.00189 * 182.39099 * 6 5 3 8 8 C 1.53002 * 109.47246 * 169.99411 * 7 6 5 9 9 H 1.09000 * 109.46986 * 60.00111 * 8 7 6 10 10 O 1.42898 * 109.47113 * 300.00070 * 8 7 6 11 11 C 1.50706 * 109.46931 * 179.97438 * 8 7 6 12 12 H 1.07999 * 120.00193 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99398 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 8 16 16 H 1.48503 * 109.46845 * 180.02562 * 15 13 11 17 17 H 1.48503 * 109.47399 * 299.99813 * 15 13 11 18 18 H 1.48498 * 109.47295 * 60.00420 * 15 13 11 19 19 C 1.47015 * 110.75344 * 58.60991 * 6 5 3 20 20 C 1.53089 * 109.25853 * 301.38484 * 19 6 5 21 21 H 1.08996 * 109.51215 * 296.91410 * 20 19 6 22 22 C 1.53002 * 109.50545 * 176.78144 * 20 19 6 23 23 C 1.53001 * 109.46939 * 175.21663 * 22 20 19 24 24 O 1.43011 * 109.50854 * 294.78383 * 3 2 1 25 25 H 1.08995 * 109.47418 * 300.00529 * 1 2 3 26 26 H 1.09009 * 109.46728 * 60.00008 * 1 2 3 27 27 H 1.08998 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47431 * 240.00021 * 2 1 3 29 29 H 1.08996 * 109.46448 * 119.99776 * 2 1 3 30 30 H 1.08999 * 109.50860 * 303.15045 * 5 3 2 31 31 H 1.09007 * 109.54189 * 183.04368 * 5 3 2 32 32 H 1.09004 * 109.47535 * 49.99559 * 7 6 5 33 33 H 1.09004 * 109.47041 * 289.99598 * 7 6 5 34 34 H 0.96701 * 113.99881 * 299.99463 * 10 8 7 35 35 H 0.97000 * 119.99706 * 359.97438 * 14 13 11 36 36 H 1.08997 * 109.50347 * 61.32444 * 19 6 5 37 37 H 1.08997 * 109.50183 * 181.45257 * 19 6 5 38 38 H 1.08994 * 109.47311 * 295.22016 * 22 20 19 39 39 H 1.09001 * 109.47164 * 55.22470 * 22 20 19 40 40 H 1.09003 * 109.47016 * 60.01012 * 23 22 20 41 41 H 1.09000 * 109.47121 * 179.97438 * 23 22 20 42 42 H 1.08994 * 109.47408 * 300.00294 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9826 0.8408 5 6 3.5658 1.4452 0.1259 6 7 4.1504 0.7823 -1.0488 7 6 5.6137 0.7131 -0.9403 8 6 6.1647 -0.1930 -2.0432 9 1 5.8914 0.2129 -3.0172 10 8 5.6140 -1.5041 -1.9020 11 6 7.6660 -0.2635 -1.9322 12 1 8.1761 0.2830 -1.1528 13 6 8.3882 -1.0256 -2.8259 14 7 7.7671 -1.6906 -3.7754 15 14 10.2490 -1.1135 -2.6879 16 1 10.7838 -1.9919 -3.7592 17 1 10.8212 0.2491 -2.8340 18 1 10.6215 -1.6671 -1.3613 19 6 3.7455 1.4638 -2.2869 20 6 2.2180 1.4608 -2.3886 21 1 1.8598 0.4337 -2.4581 22 6 1.7873 2.2383 -3.6339 23 6 0.2700 2.1344 -3.8006 24 8 1.6665 2.0811 -1.2239 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 3.8574 0.9093 1.0291 31 1 3.9253 2.4729 0.1804 32 1 5.8872 0.3072 0.0337 33 1 6.0338 1.7132 -1.0480 34 1 5.8179 -1.9273 -1.0567 35 1 6.8008 -1.6452 -3.8467 36 1 4.1073 2.4919 -2.2714 37 1 4.1684 0.9413 -3.1449 38 1 2.0700 3.2853 -3.5244 39 1 2.2787 1.8192 -4.5120 40 1 -0.2215 2.5537 -2.9226 41 1 -0.0369 2.6888 -4.6875 42 1 -0.0127 1.0875 -3.9101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930746849.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:41 Heat of formation + Delta-G solvation = -135.894358 kcal Electronic energy + Delta-G solvation = -20801.848462 eV Core-core repulsion = 17780.166623 eV Total energy + Delta-G solvation = -3021.681839 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18418 -38.48359 -36.22691 -35.63344 -34.24194 -33.39447 -30.77106 -30.39320 -27.88054 -25.62138 -25.22494 -23.68041 -22.86127 -21.98857 -20.35443 -19.42520 -17.69320 -17.49638 -16.87352 -16.58554 -15.90898 -15.77782 -15.58629 -15.33029 -15.04946 -14.71882 -14.54690 -14.33676 -13.96525 -13.79107 -13.34146 -13.12948 -12.84398 -12.68125 -12.66671 -12.52037 -12.19621 -11.98843 -11.95820 -11.94679 -11.86955 -11.67014 -11.24178 -11.11284 -10.64424 -10.50497 -10.05430 -9.28715 -8.62825 -6.47971 1.52440 1.59879 1.79559 2.53447 2.70880 2.84738 3.16495 3.71446 3.79890 3.88904 3.98567 4.02433 4.12632 4.19849 4.24596 4.33825 4.37426 4.41223 4.46965 4.63073 4.65597 4.72158 4.75746 4.81940 4.83651 4.94467 4.98786 5.07509 5.15398 5.21372 5.33992 5.39566 5.42076 5.50895 5.76488 5.95655 6.05601 6.15215 6.24244 6.54973 7.23025 7.50010 8.74938 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.028716 B = 0.005273 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.842509 B = 5309.236803 C = 5684.179531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.142 4.142 3 C 0.097 3.903 4 H 0.126 0.874 5 C 0.020 3.980 6 N -0.528 5.528 7 C 0.055 3.945 8 C 0.224 3.776 9 H 0.017 0.983 10 O -0.580 6.580 11 C -0.663 4.663 12 H 0.049 0.951 13 C -0.015 4.015 14 N -0.920 5.920 15 Si 1.115 2.885 16 H -0.285 1.285 17 H -0.272 1.272 18 H -0.268 1.268 19 C 0.028 3.972 20 C 0.103 3.897 21 H 0.061 0.939 22 C -0.116 4.116 23 C -0.139 4.139 24 O -0.378 6.378 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.020 0.980 34 H 0.360 0.640 35 H 0.267 0.733 36 H 0.028 0.972 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.578 7.094 6.915 16.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.180 4.180 3 C 0.039 3.961 4 H 0.143 0.857 5 C -0.108 4.108 6 N -0.252 5.252 7 C -0.073 4.073 8 C 0.166 3.834 9 H 0.035 0.965 10 O -0.384 6.384 11 C -0.701 4.701 12 H 0.068 0.932 13 C -0.217 4.217 14 N -0.555 5.555 15 Si 0.937 3.063 16 H -0.211 1.211 17 H -0.197 1.197 18 H -0.193 1.193 19 C -0.101 4.101 20 C 0.045 3.955 21 H 0.079 0.921 22 C -0.154 4.154 23 C -0.197 4.197 24 O -0.297 6.297 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.038 0.962 34 H 0.206 0.794 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.798 6.261 5.612 15.313 hybrid contribution -0.280 1.129 1.071 1.581 sum -13.078 7.390 6.683 16.441 Atomic orbital electron populations 1.21670 0.94360 1.01675 1.02152 1.21939 0.96953 0.96282 1.02812 1.22428 0.91757 0.94460 0.87467 0.85680 1.22918 0.96506 0.97109 0.94269 1.62179 1.09240 1.51769 1.02014 1.22575 0.86299 0.98013 1.00435 1.19297 0.90824 0.80675 0.92615 0.96545 1.86418 1.78340 1.32498 1.41188 1.22840 0.93756 1.34812 1.18680 0.93237 1.27285 1.10932 0.91834 0.91697 1.70779 1.12130 1.39912 1.32699 0.82976 0.69336 0.77153 0.76855 1.21063 1.19712 1.19305 1.22754 0.97587 0.96055 0.93668 1.22094 0.89695 0.97074 0.86680 0.92133 1.21547 0.98371 1.00528 0.94928 1.21633 0.93900 1.01917 1.02200 1.87962 1.72326 1.55357 1.14033 0.91612 0.93129 0.92519 0.92781 0.90727 0.88960 0.94992 0.90910 0.96208 0.79444 0.92223 0.95397 0.92056 0.91289 0.90508 0.92298 0.91322 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.81 71.98 0.71 -2.12 16 2 C -0.14 -3.45 5.04 30.60 0.15 -3.30 16 3 C 0.10 2.40 3.30 30.63 0.10 2.50 16 4 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 5 C 0.02 0.58 5.06 86.31 0.44 1.02 16 6 N -0.53 -19.07 4.05 -895.24 -3.63 -22.70 16 7 C 0.05 2.29 4.56 86.30 0.39 2.69 16 8 C 0.22 11.47 2.31 29.85 0.07 11.54 16 9 H 0.02 0.96 6.38 -2.39 -0.02 0.94 16 10 O -0.58 -29.95 11.88 -148.98 -1.77 -31.72 16 11 C -0.66 -37.06 8.76 25.60 0.22 -36.83 16 12 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 13 C -0.02 -0.88 5.40 84.66 0.46 -0.42 16 14 N -0.92 -57.19 13.53 21.45 0.29 -56.90 16 15 Si 1.12 49.71 29.90 68.60 2.05 51.76 16 16 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 19 C 0.03 1.00 4.72 86.31 0.41 1.40 16 20 C 0.10 3.03 2.41 30.62 0.07 3.10 16 21 H 0.06 1.91 6.38 -2.39 -0.02 1.90 16 22 C -0.12 -2.88 5.65 30.60 0.17 -2.71 16 23 C -0.14 -2.87 9.81 71.98 0.71 -2.16 16 24 O -0.38 -10.52 9.37 -148.98 -1.40 -11.92 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 1.08 7.83 -2.38 -0.02 1.06 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.05 1.64 6.01 -2.39 -0.01 1.62 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 2.43 8.09 -2.39 -0.02 2.41 16 31 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 2.92 8.04 -2.39 -0.02 2.90 16 33 H 0.02 0.85 8.12 -2.38 -0.02 0.83 16 34 H 0.36 16.79 9.04 -74.06 -0.67 16.12 16 35 H 0.27 17.20 6.47 -92.71 -0.60 16.60 16 36 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 2.51 6.38 -2.39 -0.02 2.50 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.24 7.82 -2.39 -0.02 1.22 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -64.99 326.60 -0.07 -65.06 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.48 Total: 31.70 kcal Atomic # 6 Polarization: -29.19 SS G_CDS: 3.90 Total: -25.29 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -3.34 Total: -79.60 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -3.17 Total: -43.63 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Total: -64.99 -0.07 -65.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930746849.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.830 kcal (2) G-P(sol) polarization free energy of solvation -64.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds