Wall clock time and date at job start Mon Mar 30 2020 04:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46602 * 2 1 4 4 O 1.42900 * 109.46824 * 119.99984 * 2 1 3 5 5 C 1.42895 * 113.99855 * 150.00657 * 4 2 1 6 6 C 1.52991 * 109.47421 * 179.97438 * 5 4 2 7 7 H 1.08997 * 109.47129 * 305.00065 * 6 5 4 8 8 O 1.42902 * 109.47169 * 64.99655 * 6 5 4 9 9 C 1.53000 * 109.47625 * 184.99595 * 6 5 4 10 10 N 1.46898 * 109.47417 * 179.97438 * 9 6 5 11 11 C 1.46898 * 110.99869 * 169.99849 * 10 9 6 12 12 C 1.50696 * 109.47776 * 285.62411 * 11 10 9 13 13 H 1.08001 * 119.99663 * 4.84860 * 12 11 10 14 14 C 1.37874 * 120.00454 * 184.84743 * 12 11 10 15 15 N 1.31515 * 119.99805 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00086 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47008 * 60.00029 * 16 14 12 18 18 H 1.48497 * 109.47231 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.46870 * 299.99830 * 16 14 12 20 20 C 1.46895 * 111.00346 * 293.95901 * 10 9 6 21 21 C 1.52999 * 117.49756 * 246.43875 * 20 10 9 22 22 C 1.52992 * 59.99990 * 252.50633 * 21 20 10 23 23 H 1.08997 * 109.47561 * 300.00182 * 1 2 3 24 24 H 1.08999 * 109.46821 * 60.00507 * 1 2 3 25 25 H 1.09001 * 109.46648 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47327 * 240.00273 * 2 1 3 27 27 H 1.08999 * 109.46840 * 299.99784 * 3 2 1 28 28 H 1.09000 * 109.47056 * 60.00107 * 3 2 1 29 29 H 1.09000 * 109.46634 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.47074 * 299.99756 * 5 4 2 31 31 H 1.09001 * 109.47162 * 59.99426 * 5 4 2 32 32 H 0.96703 * 113.99716 * 60.00367 * 8 6 5 33 33 H 1.08997 * 109.47251 * 300.00396 * 9 6 5 34 34 H 1.09000 * 109.47014 * 60.00091 * 9 6 5 35 35 H 1.08999 * 109.46884 * 45.62860 * 11 10 9 36 36 H 1.09005 * 109.46684 * 165.62337 * 11 10 9 37 37 H 0.96998 * 119.99829 * 179.97438 * 15 14 12 38 38 H 1.08999 * 115.54947 * 32.14380 * 20 10 9 39 39 H 1.09002 * 117.50167 * 0.02562 * 21 20 10 40 40 H 1.09005 * 117.49741 * 145.01694 * 21 20 10 41 41 H 1.09006 * 117.50146 * 252.51201 * 22 21 20 42 42 H 1.09000 * 117.49858 * 107.48999 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2660 -1.3244 0.9887 6 6 3.6760 -2.0080 2.2945 7 1 3.6749 -1.2771 3.1032 8 8 2.7497 -3.0535 2.5962 9 6 5.0794 -2.5982 2.1425 10 7 5.4733 -3.2541 3.3965 11 6 6.7059 -4.0331 3.2186 12 6 6.3982 -5.2919 2.4494 13 1 5.4052 -5.4560 2.0575 14 6 7.3840 -6.2340 2.2460 15 7 8.5930 -6.0343 2.7236 16 14 7.0026 -7.7941 1.2919 17 1 6.5571 -7.4391 -0.0795 18 1 8.2223 -8.6374 1.2139 19 1 5.9248 -8.5461 1.9834 20 6 5.6223 -2.2729 4.4796 21 6 7.0271 -2.0516 5.0439 22 6 5.9809 -2.8035 5.8691 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1299 1.4426 0.0005 30 1 3.1810 -2.0706 0.1987 31 1 4.0199 -0.5872 0.7126 32 1 2.6982 -3.7410 1.9182 33 1 5.0805 -3.3291 1.3339 34 1 5.7860 -1.8008 1.9124 35 1 7.4346 -3.4391 2.6668 36 1 7.1146 -4.2945 4.1947 37 1 9.2865 -6.6973 2.5808 38 1 4.9592 -1.4095 4.4263 39 1 7.8408 -2.6336 4.6113 40 1 7.2884 -1.0422 5.3619 41 1 5.5539 -2.2889 6.7299 42 1 6.1062 -3.8806 5.9796 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069660612.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:39 Heat of formation + Delta-G solvation = -93.814583 kcal Electronic energy + Delta-G solvation = -19926.037967 eV Core-core repulsion = 16906.180844 eV Total energy + Delta-G solvation = -3019.857123 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.23453 -39.29108 -37.57666 -35.28818 -34.06034 -33.61107 -31.05131 -28.76224 -28.06908 -25.96469 -24.46542 -23.15676 -22.82593 -22.13138 -20.50272 -18.81662 -18.02105 -17.25967 -17.13299 -16.74241 -16.66498 -16.07687 -15.68451 -15.36881 -14.63747 -14.48781 -14.21058 -14.04633 -13.76380 -13.43184 -13.26454 -13.05489 -12.94344 -12.83240 -12.70824 -12.52582 -12.33852 -12.29951 -11.99096 -11.79391 -11.66287 -11.49708 -11.14348 -11.10442 -10.79218 -10.56670 -10.49468 -8.78320 -8.18420 -6.28676 1.41248 1.44719 1.52159 2.39520 2.52519 2.96411 3.13326 3.33925 3.67122 3.85864 3.95618 4.02558 4.12485 4.17293 4.18686 4.24339 4.27015 4.33110 4.47388 4.50914 4.76164 4.76694 4.77924 4.81666 4.89928 4.92429 4.96298 5.07122 5.13842 5.22391 5.29720 5.30538 5.32232 5.34858 5.66273 6.08027 6.29895 6.40792 6.62884 6.86265 6.96305 7.40650 8.91579 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.005156 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.259788 B = 5428.860471 C = 6423.451841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 C -0.172 4.172 4 O -0.394 6.394 5 C 0.038 3.962 6 C 0.127 3.873 7 H 0.095 0.905 8 O -0.557 6.557 9 C 0.040 3.960 10 N -0.503 5.503 11 C 0.209 3.791 12 C -0.522 4.522 13 H 0.063 0.937 14 C 0.003 3.997 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.015 3.985 21 C -0.222 4.222 22 C -0.169 4.169 23 H 0.057 0.943 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.379 0.621 33 H 0.073 0.927 34 H 0.036 0.964 35 H -0.038 1.038 36 H 0.013 0.987 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.121 0.879 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.925 13.206 -5.410 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 C -0.230 4.230 4 O -0.314 6.314 5 C -0.039 4.039 6 C 0.068 3.932 7 H 0.113 0.887 8 O -0.363 6.363 9 C -0.089 4.089 10 N -0.225 5.225 11 C 0.083 3.917 12 C -0.560 4.560 13 H 0.081 0.919 14 C -0.195 4.195 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.095 4.095 21 C -0.261 4.261 22 C -0.206 4.206 23 H 0.076 0.924 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.227 0.773 33 H 0.091 0.909 34 H 0.054 0.946 35 H -0.020 1.020 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.148 0.852 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.139 0.861 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.333 13.146 -4.586 18.600 hybrid contribution 1.429 -0.775 -1.181 2.010 sum -10.904 12.370 -5.767 17.469 Atomic orbital electron populations 1.21862 0.92830 1.02583 1.03100 1.22345 0.95804 0.92935 0.87836 1.22286 1.01350 0.96190 1.03134 1.87964 1.36515 1.70159 1.36734 1.23175 0.86408 0.96545 0.97786 1.21775 0.86579 0.88624 0.96263 0.88744 1.86549 1.62520 1.36724 1.50489 1.22555 0.95796 0.97557 0.92954 1.61768 1.34048 1.21965 1.04713 1.19450 0.85456 0.91613 0.95144 1.21459 0.96794 1.03845 1.33926 0.91877 1.25878 0.94710 1.01875 0.97062 1.70079 1.03220 1.36950 1.47267 0.85466 0.77436 0.78669 0.79221 1.18956 1.21081 1.19602 1.22849 0.96928 0.97109 0.92603 1.23502 0.93996 1.02112 1.06477 1.22989 1.03047 0.99600 0.95003 0.92408 0.89213 0.92625 0.91621 0.89831 0.92345 0.92851 0.92078 0.91584 0.77301 0.90873 0.94561 1.01991 0.96881 0.92789 0.85199 0.91159 0.86827 0.86089 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.56 71.98 0.69 -1.72 16 2 C 0.07 1.31 3.34 30.60 0.10 1.41 16 3 C -0.17 -2.79 9.53 71.99 0.69 -2.10 16 4 O -0.39 -10.27 9.95 -144.34 -1.44 -11.70 16 5 C 0.04 0.96 5.38 71.98 0.39 1.34 16 6 C 0.13 3.90 3.19 30.59 0.10 3.99 16 7 H 0.09 2.93 6.40 -2.39 -0.02 2.91 16 8 O -0.56 -18.98 13.17 -144.34 -1.90 -20.88 16 9 C 0.04 1.45 4.45 86.30 0.38 1.83 16 10 N -0.50 -21.81 4.52 -875.56 -3.95 -25.76 16 11 C 0.21 11.08 3.38 85.56 0.29 11.37 16 12 C -0.52 -29.36 8.58 25.60 0.22 -29.14 16 13 H 0.06 3.45 7.57 -2.91 -0.02 3.43 16 14 C 0.00 0.15 5.46 84.65 0.46 0.61 16 15 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 16 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 17 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 18 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 C 0.01 0.54 5.83 44.91 0.26 0.81 16 21 C -0.22 -8.04 9.56 30.59 0.29 -7.74 16 22 C -0.17 -6.04 9.91 30.59 0.30 -5.73 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.99 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.14 7.79 -2.39 -0.02 1.12 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 0.89 7.87 -2.39 -0.02 0.87 16 30 H 0.06 1.41 8.09 -2.38 -0.02 1.39 16 31 H 0.07 1.47 7.87 -2.39 -0.02 1.46 16 32 H 0.38 11.04 9.05 -74.05 -0.67 10.37 16 33 H 0.07 2.84 7.21 -2.39 -0.02 2.82 16 34 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 35 H -0.04 -2.15 7.82 -2.39 -0.02 -2.16 16 36 H 0.01 0.76 5.63 -2.38 -0.01 0.75 16 37 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.13 4.12 6.34 -2.39 -0.02 4.10 16 39 H 0.07 3.08 6.02 -2.39 -0.01 3.07 16 40 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 41 H 0.12 3.44 8.14 -2.38 -0.02 3.42 16 42 H 0.07 2.86 7.48 -2.39 -0.02 2.84 16 Total: -1.00 -66.84 338.50 -0.49 -67.34 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.32 Total: 25.92 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.17 Total: -25.08 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.67 Total: -81.70 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -3.34 Total: -32.58 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -66.84 -0.49 -67.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069660612.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.479 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds