Wall clock time and date at job start Mon Mar 30 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 6 6 C 1.42901 * 113.99649 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46429 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.63272 * 308.10796 * 7 6 5 9 9 C 1.55139 * 110.70836 * 71.40858 * 7 6 5 10 10 C 1.54904 * 101.65895 * 154.03338 * 9 7 6 11 11 N 1.47848 * 104.79292 * 322.92980 * 10 9 7 12 12 C 1.46894 * 111.00158 * 146.36379 * 11 10 9 13 13 H 1.08998 * 109.47190 * 294.15929 * 12 11 10 14 14 C 1.53000 * 109.47219 * 174.15390 * 12 11 10 15 15 C 1.50707 * 109.46848 * 54.15628 * 12 11 10 16 16 H 1.07995 * 120.00333 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99542 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00443 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99823 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.46960 * 89.99588 * 19 17 15 21 21 H 1.48497 * 109.46878 * 209.99670 * 19 17 15 22 22 H 1.48501 * 109.46803 * 329.99794 * 19 17 15 23 23 C 1.47443 * 108.56706 * 24.09269 * 11 10 9 24 24 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 26 26 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 27 27 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 28 28 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 29 29 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 30 30 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 31 31 H 1.08990 * 109.47463 * 299.99806 * 6 5 4 32 32 H 1.08992 * 109.47069 * 60.00902 * 6 5 4 33 33 H 1.09007 * 110.98483 * 272.12775 * 9 7 6 34 34 H 1.09000 * 110.99284 * 35.93207 * 9 7 6 35 35 H 1.08994 * 110.37150 * 204.09884 * 10 9 7 36 36 H 1.09000 * 110.46869 * 81.80029 * 10 9 7 37 37 H 1.09001 * 109.46979 * 300.00329 * 14 12 11 38 38 H 1.08996 * 109.47004 * 60.00204 * 14 12 11 39 39 H 1.08997 * 109.47209 * 179.97438 * 14 12 11 40 40 H 0.96998 * 120.00429 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.88699 * 239.60678 * 23 11 10 42 42 H 1.08996 * 109.88717 * 118.42149 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3249 7 6 5.7246 -0.2330 -2.6652 8 1 5.1420 -1.1428 -2.8095 9 6 5.4957 0.7607 -3.8344 10 6 6.4798 0.2203 -4.9016 11 7 7.6606 -0.2288 -4.1334 12 6 8.2836 -1.4007 -4.7629 13 1 7.5993 -2.2476 -4.7113 14 6 9.5795 -1.7465 -4.0267 15 6 8.5924 -1.0915 -6.2052 16 1 8.3497 -0.1216 -6.6135 17 6 9.1838 -2.0473 -7.0037 18 7 9.4789 -3.2286 -6.5067 19 14 9.5659 -1.6643 -8.7917 20 1 10.9317 -1.0905 -8.8941 21 1 9.4923 -2.9130 -9.5920 22 1 8.5774 -0.6849 -9.3103 23 6 7.2357 -0.5328 -2.7546 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9784 2.1766 0.0889 30 1 3.8514 0.5683 0.8410 31 1 5.8621 1.3963 -1.2631 32 1 5.7357 -0.2119 -0.5109 33 1 4.4671 0.7127 -4.1918 34 1 5.7581 1.7769 -3.5402 35 1 6.7581 1.0123 -5.5968 36 1 6.0363 -0.6175 -5.4397 37 1 10.2637 -0.8995 -4.0783 38 1 9.3562 -1.9701 -2.9835 39 1 10.0416 -2.6163 -4.4934 40 1 9.8954 -3.9009 -7.0684 41 1 7.7809 0.0966 -2.0514 42 1 7.4189 -1.5843 -2.5336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075536403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:35 Heat of formation + Delta-G solvation = -91.848116 kcal Electronic energy + Delta-G solvation = -19568.869646 eV Core-core repulsion = 16549.097796 eV Total energy + Delta-G solvation = -3019.771851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.91694 -38.19416 -37.01480 -33.89039 -31.67130 -30.39677 -29.09481 -27.54162 -26.48326 -25.35269 -24.08941 -22.70268 -21.22002 -20.08570 -19.02757 -17.09191 -16.97196 -16.32575 -15.65425 -15.55107 -15.38428 -15.07186 -14.49688 -14.12609 -13.34465 -13.01597 -12.98024 -12.59342 -12.51994 -12.16867 -12.02405 -11.67371 -11.42301 -11.19549 -11.07086 -10.90033 -10.63794 -10.52812 -10.28906 -10.24160 -10.02035 -9.96884 -9.90626 -9.70632 -9.52129 -8.83253 -8.39138 -7.10902 -5.97180 -4.01504 3.33653 3.39687 3.43261 3.53774 3.63124 4.44860 4.78597 4.93780 5.01641 5.04717 5.07173 5.10576 5.12389 5.27031 5.29685 5.35053 5.44497 5.48859 5.51477 5.67554 5.74577 5.93198 6.03234 6.17938 6.36986 6.48131 6.61926 6.77170 6.84003 6.89831 6.91103 7.13017 7.16407 7.26179 7.56720 7.75259 7.88245 8.22616 8.39193 8.63943 9.05500 9.63600 11.09801 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.038497 B = 0.003558 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.145400 B = 7866.949644 C = 8076.545042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.378 6.378 6 C 0.076 3.924 7 C -0.108 4.108 8 H 0.079 0.921 9 C -0.120 4.120 10 C 0.060 3.940 11 N -0.526 5.526 12 C 0.206 3.794 13 H -0.001 1.001 14 C -0.131 4.131 15 C -0.503 4.503 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.274 1.274 23 C 0.052 3.948 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.006 0.994 39 H 0.084 0.916 40 H 0.260 0.740 41 H 0.062 0.938 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.545 8.391 13.131 20.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.013 4.013 4 C -0.014 4.014 5 O -0.298 6.298 6 C 0.000 4.000 7 C -0.128 4.128 8 H 0.097 0.903 9 C -0.158 4.158 10 C -0.068 4.068 11 N -0.251 5.251 12 C 0.100 3.900 13 H 0.017 0.983 14 C -0.189 4.189 15 C -0.542 4.542 16 H 0.080 0.920 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.076 4.076 24 H 0.104 0.896 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.025 0.975 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.084 8.365 12.917 20.200 hybrid contribution -0.348 -0.228 -0.718 0.830 sum -13.433 8.138 12.199 19.886 Atomic orbital electron populations 1.22741 0.81240 1.02837 0.99740 1.87987 1.19444 1.27355 1.95333 1.22570 0.92671 0.85436 1.00658 1.22462 0.93100 0.97529 0.88336 1.87966 1.22710 1.81887 1.37191 1.22528 0.80722 0.99138 0.97660 1.22409 0.97792 0.99157 0.93419 0.90251 1.22755 0.99272 0.98264 0.95522 1.22773 0.89480 0.99219 0.95353 1.63714 1.24880 1.36508 0.99966 1.19442 0.91768 0.85582 0.93190 0.98322 1.21807 0.99431 1.02080 0.95572 1.21163 1.39457 0.99454 0.94105 0.92009 1.24937 0.95755 0.95000 0.98590 1.69894 1.42960 1.04597 1.35900 0.86525 0.78733 0.77579 0.84731 1.20697 1.21366 1.19928 1.22720 0.91389 0.99711 0.93806 0.89609 0.94341 0.94014 0.92085 0.92394 0.91965 0.92671 0.93206 0.93498 0.91604 0.91617 0.91272 0.93528 0.94771 0.97477 0.89750 0.93029 0.91988 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -4.57 10.67 -40.09 -0.43 -5.00 16 3 C 0.06 0.61 6.32 37.16 0.23 0.84 16 4 C 0.06 0.66 6.32 37.16 0.23 0.90 16 5 O -0.38 -5.39 10.25 -40.09 -0.41 -5.80 16 6 C 0.08 1.05 5.23 37.16 0.19 1.25 16 7 C -0.11 -1.79 3.21 -88.79 -0.28 -2.07 16 8 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 9 C -0.12 -2.00 6.47 -24.59 -0.16 -2.16 16 10 C 0.06 1.22 5.53 -2.30 -0.01 1.21 16 11 N -0.53 -11.74 5.02 -224.68 -1.13 -12.87 16 12 C 0.21 5.37 1.62 -68.86 -0.11 5.26 16 13 H 0.00 -0.02 8.10 -51.93 -0.42 -0.44 16 14 C -0.13 -3.29 8.92 37.16 0.33 -2.96 16 15 C -0.50 -14.08 7.94 -34.44 -0.27 -14.35 16 16 H 0.06 1.73 6.93 -52.49 -0.36 1.36 16 17 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -25.94 11.32 55.43 0.63 -25.31 16 19 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.05 0.98 5.76 -2.83 -0.02 0.97 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.63 8.00 -51.93 -0.42 0.22 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.03 7.94 -51.93 -0.41 0.62 16 35 H 0.07 1.42 7.77 -51.93 -0.40 1.01 16 36 H 0.05 1.03 7.69 -51.93 -0.40 0.63 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.01 0.14 6.82 -51.93 -0.35 -0.21 16 39 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.06 1.08 7.82 -51.93 -0.41 0.67 16 42 H 0.05 1.02 6.66 -51.93 -0.35 0.67 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -30.89 333.41 -7.80 -38.69 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -7.62 Total: -3.16 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 1.16 Total: -8.22 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.50 Total: -38.18 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.84 Total: -10.80 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.89 -7.80 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075536403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.154 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds