Wall clock time and date at job start Mon Mar 30 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47405 * 64.99720 * 4 3 2 6 6 C 1.42901 * 113.99649 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46429 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.63272 * 308.10796 * 7 6 5 9 9 C 1.55139 * 110.70836 * 71.40858 * 7 6 5 10 10 C 1.54904 * 101.65895 * 154.03338 * 9 7 6 11 11 N 1.47848 * 104.79292 * 322.92980 * 10 9 7 12 12 C 1.46894 * 111.00158 * 146.36379 * 11 10 9 13 13 H 1.08998 * 109.47190 * 294.15929 * 12 11 10 14 14 C 1.53000 * 109.47219 * 174.15390 * 12 11 10 15 15 C 1.50707 * 109.46848 * 54.15628 * 12 11 10 16 16 H 1.07995 * 120.00333 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99542 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00443 * 359.97438 * 17 15 12 19 19 Si 1.86809 * 119.99823 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.46960 * 89.99588 * 19 17 15 21 21 H 1.48497 * 109.46878 * 209.99670 * 19 17 15 22 22 H 1.48501 * 109.46803 * 329.99794 * 19 17 15 23 23 C 1.47443 * 108.56706 * 24.09269 * 11 10 9 24 24 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 26 26 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 27 27 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 28 28 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 29 29 H 1.09002 * 109.46642 * 184.99995 * 4 3 2 30 30 H 1.09002 * 109.47069 * 304.99524 * 4 3 2 31 31 H 1.08990 * 109.47463 * 299.99806 * 6 5 4 32 32 H 1.08992 * 109.47069 * 60.00902 * 6 5 4 33 33 H 1.09007 * 110.98483 * 272.12775 * 9 7 6 34 34 H 1.09000 * 110.99284 * 35.93207 * 9 7 6 35 35 H 1.08994 * 110.37150 * 204.09884 * 10 9 7 36 36 H 1.09000 * 110.46869 * 81.80029 * 10 9 7 37 37 H 1.09001 * 109.46979 * 300.00329 * 14 12 11 38 38 H 1.08996 * 109.47004 * 60.00204 * 14 12 11 39 39 H 1.08997 * 109.47209 * 179.97438 * 14 12 11 40 40 H 0.96998 * 120.00429 * 180.02562 * 18 17 15 41 41 H 1.08998 * 109.88699 * 239.60678 * 23 11 10 42 42 H 1.08996 * 109.88717 * 118.42149 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5797 -1.2219 6 6 5.3812 0.4202 -1.3249 7 6 5.7246 -0.2330 -2.6652 8 1 5.1420 -1.1428 -2.8095 9 6 5.4957 0.7607 -3.8344 10 6 6.4798 0.2203 -4.9016 11 7 7.6606 -0.2288 -4.1334 12 6 8.2836 -1.4007 -4.7629 13 1 7.5993 -2.2476 -4.7113 14 6 9.5795 -1.7465 -4.0267 15 6 8.5924 -1.0915 -6.2052 16 1 8.3497 -0.1216 -6.6135 17 6 9.1838 -2.0473 -7.0037 18 7 9.4789 -3.2286 -6.5067 19 14 9.5659 -1.6643 -8.7917 20 1 10.9317 -1.0905 -8.8941 21 1 9.4923 -2.9130 -9.5920 22 1 8.5774 -0.6849 -9.3103 23 6 7.2357 -0.5328 -2.7546 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9784 2.1766 0.0889 30 1 3.8514 0.5683 0.8410 31 1 5.8621 1.3963 -1.2631 32 1 5.7357 -0.2119 -0.5109 33 1 4.4671 0.7127 -4.1918 34 1 5.7581 1.7769 -3.5402 35 1 6.7581 1.0123 -5.5968 36 1 6.0363 -0.6175 -5.4397 37 1 10.2637 -0.8995 -4.0783 38 1 9.3562 -1.9701 -2.9835 39 1 10.0416 -2.6163 -4.4934 40 1 9.8954 -3.9009 -7.0684 41 1 7.7809 0.0966 -2.0514 42 1 7.4189 -1.5843 -2.5336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075536403.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:35 Heat of formation + Delta-G solvation = -113.168434 kcal Electronic energy + Delta-G solvation = -19569.794165 eV Core-core repulsion = 16549.097796 eV Total energy + Delta-G solvation = -3020.696369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27756 -39.20116 -38.04281 -35.76257 -33.41053 -31.58966 -30.41079 -29.29119 -27.35658 -27.09940 -25.56794 -23.48970 -22.94268 -21.64064 -20.70336 -18.52077 -17.88484 -17.71634 -17.18550 -16.66327 -16.32771 -16.26676 -15.84574 -15.69654 -14.82748 -14.58464 -14.40242 -14.22651 -13.65518 -13.46406 -13.22766 -13.03564 -12.83042 -12.76723 -12.59088 -12.37698 -12.27651 -12.11491 -11.98901 -11.76274 -11.61830 -11.54788 -11.51841 -10.91550 -10.62801 -10.53562 -10.49296 -8.94101 -8.12232 -6.24395 1.41592 1.42270 1.52820 2.41782 2.67376 2.89802 3.15923 3.43414 3.73370 3.83710 4.03322 4.16880 4.25651 4.43627 4.44417 4.47070 4.50963 4.53868 4.58609 4.63326 4.64586 4.74272 4.79705 4.82183 4.86683 4.93994 5.01825 5.07786 5.08837 5.13318 5.26219 5.40058 5.48362 5.72663 5.78028 6.20789 6.22988 6.35542 6.38263 6.70135 6.90571 7.45138 8.94127 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.038497 B = 0.003558 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.145400 B = 7866.949644 C = 8076.545042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.060 3.940 4 C 0.055 3.945 5 O -0.403 6.403 6 C 0.084 3.916 7 C -0.102 4.102 8 H 0.061 0.939 9 C -0.104 4.104 10 C 0.057 3.943 11 N -0.534 5.534 12 C 0.212 3.788 13 H -0.040 1.040 14 C -0.119 4.119 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.009 3.991 18 N -0.922 5.922 19 Si 0.962 3.038 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.268 1.268 23 C 0.051 3.949 24 H 0.089 0.911 25 H 0.058 0.942 26 H 0.045 0.955 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.019 0.981 37 H 0.032 0.968 38 H 0.028 0.972 39 H 0.059 0.941 40 H 0.262 0.738 41 H 0.084 0.916 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 10.216 14.015 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.017 4.017 4 C -0.021 4.021 5 O -0.323 6.323 6 C 0.008 3.992 7 C -0.122 4.122 8 H 0.080 0.920 9 C -0.142 4.142 10 C -0.071 4.071 11 N -0.259 5.259 12 C 0.105 3.895 13 H -0.022 1.022 14 C -0.177 4.177 15 C -0.560 4.560 16 H 0.075 0.925 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.787 3.213 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.193 1.193 23 C -0.077 4.077 24 H 0.107 0.893 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.037 0.963 37 H 0.051 0.949 38 H 0.047 0.953 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.762 10.207 13.819 22.012 hybrid contribution -0.201 -0.799 -0.939 1.249 sum -13.963 9.408 12.880 21.198 Atomic orbital electron populations 1.22896 0.79704 1.03531 1.00888 1.87932 1.21346 1.28917 1.95604 1.22733 0.92035 0.84880 1.02011 1.22744 0.93897 0.98581 0.86880 1.87923 1.22562 1.82619 1.39192 1.22375 0.81171 0.99891 0.95785 1.22274 0.95726 0.98757 0.95406 0.92025 1.22663 0.98603 0.98959 0.93997 1.22775 0.89827 0.98173 0.96315 1.63660 1.26102 1.34529 1.01565 1.19231 0.91513 0.85632 0.93153 1.02222 1.21623 0.98762 1.00801 0.96546 1.21431 1.39708 0.99386 0.95440 0.92462 1.25750 0.95518 0.94798 1.02837 1.70023 1.43366 1.05377 1.37382 0.85500 0.78714 0.77536 0.79554 1.19962 1.20900 1.19292 1.22769 0.93482 0.99368 0.92070 0.89290 0.92378 0.93617 0.89144 0.92500 0.89451 0.92475 0.91375 0.92570 0.90606 0.89672 0.91588 0.96273 0.94920 0.95286 0.92205 0.92907 0.89747 0.94434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.43 10.67 -144.34 -1.54 -10.96 16 3 C 0.06 1.01 6.32 71.98 0.45 1.46 16 4 C 0.06 1.02 6.32 71.98 0.45 1.48 16 5 O -0.40 -10.62 10.25 -144.34 -1.48 -12.10 16 6 C 0.08 2.11 5.23 71.98 0.38 2.49 16 7 C -0.10 -3.25 3.21 -9.61 -0.03 -3.28 16 8 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 9 C -0.10 -3.32 6.47 31.98 0.21 -3.11 16 10 C 0.06 2.34 5.53 86.77 0.48 2.82 16 11 N -0.53 -23.90 5.02 -864.76 -4.34 -28.25 16 12 C 0.21 11.31 1.62 44.17 0.07 11.38 16 13 H -0.04 -2.37 8.10 -2.39 -0.02 -2.39 16 14 C -0.12 -6.08 8.92 71.98 0.64 -5.44 16 15 C -0.52 -29.73 7.94 25.60 0.20 -29.53 16 16 H 0.06 3.24 6.93 -2.91 -0.02 3.22 16 17 C 0.01 0.53 5.30 84.65 0.45 0.98 16 18 N -0.92 -54.54 11.32 21.45 0.24 -54.30 16 19 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 23 C 0.05 1.89 5.76 86.65 0.50 2.39 16 24 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.08 2.41 7.94 -2.39 -0.02 2.39 16 35 H 0.07 2.71 7.77 -2.39 -0.02 2.69 16 36 H 0.02 0.87 7.69 -2.39 -0.02 0.85 16 37 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.03 1.30 6.82 -2.39 -0.02 1.28 16 39 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 40 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.08 2.74 7.82 -2.39 -0.02 2.72 16 42 H 0.04 1.48 6.66 -2.39 -0.02 1.46 16 Total: -1.00 -67.19 333.41 0.92 -66.27 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 0.96 Total: 9.33 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 5.06 Total: -16.73 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -4.10 Total: -82.54 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -3.02 Total: -23.07 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.19 0.92 -66.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075536403.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.895 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds