Wall clock time and date at job start Mon Mar 30 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47055 * 2 1 4 4 C 1.42904 * 114.00313 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47396 * 180.02562 * 4 3 2 6 6 O 1.42898 * 109.47319 * 64.99884 * 5 4 3 7 7 C 1.42902 * 114.00186 * 180.02562 * 6 5 4 8 8 H 1.08995 * 110.28615 * 329.32784 * 7 6 5 9 9 C 1.54261 * 110.32117 * 91.45015 * 7 6 5 10 10 C 1.54385 * 105.05755 * 118.89779 * 9 7 6 11 11 N 1.48559 * 104.59457 * 23.85006 * 10 9 7 12 12 C 1.46899 * 111.00116 * 200.95646 * 11 10 9 13 13 H 1.09004 * 109.46884 * 60.12618 * 12 11 10 14 14 C 1.52998 * 109.47155 * 180.12528 * 12 11 10 15 15 C 1.50697 * 109.47206 * 300.12731 * 12 11 10 16 16 H 1.07999 * 120.00037 * 0.02562 * 15 12 11 17 17 C 1.37882 * 119.99839 * 179.97438 * 15 12 11 18 18 N 1.31518 * 119.99737 * 180.02562 * 17 15 12 19 19 Si 1.86800 * 120.00140 * 0.02562 * 17 15 12 20 20 H 1.48499 * 109.46988 * 90.00029 * 19 17 15 21 21 H 1.48500 * 109.47113 * 210.00138 * 19 17 15 22 22 H 1.48502 * 109.46875 * 329.99898 * 19 17 15 23 23 C 1.48562 * 104.22382 * 320.51966 * 11 10 9 24 24 H 1.08998 * 109.47516 * 59.99720 * 1 2 3 25 25 H 1.08999 * 109.46787 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47071 * 299.99890 * 1 2 3 27 27 H 1.08999 * 109.47215 * 240.00380 * 2 1 3 28 28 H 1.08998 * 109.47516 * 120.00280 * 2 1 3 29 29 H 1.09001 * 109.46993 * 59.99365 * 4 3 2 30 30 H 1.09004 * 109.46505 * 300.00140 * 4 3 2 31 31 H 1.09002 * 109.47153 * 304.99576 * 5 4 3 32 32 H 1.09001 * 109.46832 * 184.99767 * 5 4 3 33 33 H 1.08997 * 110.31978 * 237.79031 * 9 7 6 34 34 H 1.08991 * 110.32947 * 359.90029 * 9 7 6 35 35 H 1.09004 * 110.40912 * 142.62650 * 10 9 7 36 36 H 1.08994 * 110.41317 * 265.07164 * 10 9 7 37 37 H 1.08999 * 109.47379 * 300.00138 * 14 12 11 38 38 H 1.08996 * 109.47021 * 60.00501 * 14 12 11 39 39 H 1.09005 * 109.47137 * 180.02562 * 14 12 11 40 40 H 0.96998 * 119.99579 * 179.97438 * 18 17 15 41 41 H 1.09000 * 110.40710 * 280.70215 * 23 11 10 42 42 H 1.08996 * 110.41144 * 158.26267 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 8 3.3986 3.5448 1.2217 7 6 3.7194 4.9335 1.3244 8 1 4.6364 5.1511 0.7769 9 6 2.5571 5.7930 0.7857 10 6 2.1004 6.6482 1.9872 11 7 3.2883 6.7080 2.8773 12 6 2.8988 7.0435 4.2534 13 1 2.2172 6.2827 4.6338 14 6 4.1463 7.0987 5.1375 15 6 2.2127 8.3852 4.2683 16 1 2.0790 8.9336 3.3475 17 6 1.7548 8.9121 5.4573 18 7 1.1556 10.0828 5.4702 19 14 1.9854 7.9633 7.0497 20 1 3.2814 8.3417 7.6682 21 1 0.8776 8.2875 7.9840 22 1 1.9805 6.5062 6.7629 23 6 3.8671 5.3416 2.8059 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8333 0.9767 -0.8908 30 1 3.8340 0.9765 0.8892 31 1 3.3492 3.4419 -0.8412 32 1 4.9082 3.0255 -0.0899 33 1 2.9043 6.4338 -0.0248 34 1 1.7428 5.1557 0.4414 35 1 1.8218 7.6491 1.6574 36 1 1.2656 6.1695 2.4991 37 1 4.6425 6.1283 5.1267 38 1 4.8278 7.8596 4.7571 39 1 3.8572 7.3473 6.1587 40 1 0.8331 10.4533 6.3066 41 1 3.3087 4.6584 3.4459 42 1 4.9185 5.3586 3.0925 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123156371.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:27 Heat of formation + Delta-G solvation = -106.993144 kcal Electronic energy + Delta-G solvation = -19789.692765 eV Core-core repulsion = 16769.264177 eV Total energy + Delta-G solvation = -3020.428589 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.43319 -39.11804 -37.90560 -35.35664 -33.42823 -32.57169 -30.38154 -29.78924 -28.88724 -26.88243 -23.67461 -23.63735 -23.33551 -21.64819 -21.24582 -18.89341 -18.09584 -17.81555 -17.39984 -16.83093 -16.39025 -15.98916 -15.46660 -15.32166 -15.12176 -14.75645 -14.50890 -14.18272 -14.04811 -13.73210 -13.38032 -13.32262 -12.96264 -12.67618 -12.55761 -12.45538 -12.29241 -12.21897 -12.14258 -11.96616 -11.85838 -11.45836 -11.41755 -11.07798 -10.75135 -10.54789 -10.45669 -9.27621 -8.30710 -6.34169 1.27874 1.33596 1.43397 2.29800 2.59012 2.78307 3.02844 3.39784 3.69828 3.80417 4.07179 4.13503 4.16561 4.27097 4.35655 4.36693 4.45605 4.48856 4.49808 4.55996 4.62067 4.67265 4.70948 4.74616 4.81461 4.89470 4.91786 4.96026 5.01992 5.03514 5.10606 5.14907 5.25827 5.38245 5.60917 5.93601 6.07900 6.28892 6.42025 6.57556 6.71223 7.30617 8.85860 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.027419 B = 0.004219 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.935310 B = 6634.999784 C = 6895.309807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.413 6.413 4 C 0.062 3.938 5 C 0.055 3.945 6 O -0.395 6.395 7 C 0.095 3.905 8 H 0.095 0.905 9 C -0.137 4.137 10 C 0.050 3.950 11 N -0.503 5.503 12 C 0.174 3.826 13 H -0.014 1.014 14 C -0.139 4.139 15 C -0.509 4.509 16 H 0.040 0.960 17 C 0.014 3.986 18 N -0.946 5.946 19 Si 0.949 3.051 20 H -0.260 1.260 21 H -0.296 1.296 22 H -0.257 1.257 23 C 0.032 3.968 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.019 0.981 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.267 0.733 41 H 0.033 0.967 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.378 -21.227 -11.943 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.334 6.334 4 C -0.014 4.014 5 C -0.021 4.021 6 O -0.314 6.314 7 C 0.037 3.963 8 H 0.113 0.887 9 C -0.175 4.175 10 C -0.078 4.078 11 N -0.228 5.228 12 C 0.066 3.934 13 H 0.004 0.996 14 C -0.196 4.196 15 C -0.547 4.547 16 H 0.059 0.941 17 C -0.183 4.183 18 N -0.586 5.586 19 Si 0.776 3.224 20 H -0.186 1.186 21 H -0.224 1.224 22 H -0.182 1.182 23 C -0.096 4.096 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.462 -20.634 -11.859 24.661 hybrid contribution -0.773 -0.332 1.088 1.375 sum 5.689 -20.966 -10.771 24.248 Atomic orbital electron populations 1.21776 0.93651 1.03233 1.02285 1.22627 0.95962 0.83046 1.00906 1.87961 1.21961 1.27866 1.95592 1.22681 0.81335 0.95461 1.01963 1.22809 0.99704 0.92641 0.86941 1.87982 1.81375 1.22812 1.39256 1.22760 0.97387 0.80579 0.95545 0.88717 1.22827 0.99098 0.98146 0.97431 1.22766 0.92162 0.99223 0.93660 1.65313 1.25129 1.23355 1.09005 1.19726 0.92800 0.94295 0.86581 0.99621 1.22028 0.98479 1.01265 0.97821 1.21164 1.36158 1.02953 0.94475 0.94122 1.25759 0.94464 0.95593 1.02522 1.70028 1.41189 1.19243 1.28175 0.85856 0.77396 0.79930 0.79252 1.18557 1.22375 1.18192 1.23174 1.01171 0.89508 0.95730 0.92271 0.88955 0.93402 0.91638 0.93092 0.89093 0.92580 0.92443 0.89183 0.89359 0.90621 0.92094 0.96300 0.91957 0.92187 0.94665 0.92432 0.94819 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 0.86 6.66 71.98 0.48 1.34 16 3 O -0.41 -9.81 10.31 -144.35 -1.49 -11.30 16 4 C 0.06 1.11 6.32 71.98 0.45 1.56 16 5 C 0.06 1.09 6.17 71.98 0.44 1.54 16 6 O -0.39 -11.25 9.91 -144.35 -1.43 -12.69 16 7 C 0.10 2.75 3.52 31.49 0.11 2.86 16 8 H 0.09 2.22 7.84 -2.39 -0.02 2.20 16 9 C -0.14 -4.28 6.80 31.49 0.21 -4.07 16 10 C 0.05 2.08 5.69 86.45 0.49 2.57 16 11 N -0.50 -21.59 5.19 -860.73 -4.47 -26.06 16 12 C 0.17 8.59 1.42 44.17 0.06 8.66 16 13 H -0.01 -0.71 7.03 -2.38 -0.02 -0.72 16 14 C -0.14 -6.01 8.63 71.98 0.62 -5.39 16 15 C -0.51 -30.01 8.67 25.60 0.22 -29.79 16 16 H 0.04 2.66 7.19 -2.91 -0.02 2.64 16 17 C 0.01 0.84 5.45 84.66 0.46 1.30 16 18 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 19 Si 0.95 46.16 24.37 68.60 1.67 47.83 16 20 H -0.26 -11.84 6.87 99.48 0.68 -11.16 16 21 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 22 H -0.26 -11.95 6.53 99.48 0.65 -11.30 16 23 C 0.03 1.12 5.28 86.45 0.46 1.58 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.27 8.10 -2.39 -0.02 1.25 16 33 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 34 H 0.08 2.34 7.98 -2.39 -0.02 2.32 16 35 H 0.06 2.73 7.42 -2.38 -0.02 2.72 16 36 H 0.02 0.84 7.97 -2.39 -0.02 0.82 16 37 H 0.06 2.26 7.07 -2.39 -0.02 2.24 16 38 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.03 1.56 3.27 -2.38 -0.01 1.55 16 40 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 41 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 42 H 0.10 2.99 7.70 -2.39 -0.02 2.97 16 Total: -1.00 -71.04 328.29 0.23 -70.82 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.88 Total: 10.78 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: 4.76 Total: -19.56 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -4.17 Total: -85.89 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -2.92 Total: -23.98 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Total: -71.04 0.23 -70.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123156371.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.176 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds